Wall clock time and date at job start Tue Mar 31 2020 13:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00226 * 2 1 4 4 C 1.46904 * 110.99895 * 123.95094 * 2 1 3 5 5 C 1.50705 * 109.46963 * 66.04322 * 4 2 1 6 6 C 1.37473 * 123.34966 * 260.20221 * 5 4 2 7 7 C 1.33824 * 115.09890 * 180.27222 * 6 5 4 8 8 S 1.70618 * 110.95312 * 359.74802 * 7 6 5 9 9 C 1.36644 * 123.35044 * 80.00470 * 5 4 2 10 10 C 1.46579 * 125.45740 * 0.02562 * 9 5 4 11 11 O 1.21699 * 120.00221 * 8.80645 * 10 9 5 12 12 N 1.34781 * 120.00005 * 188.80628 * 10 9 5 13 13 C 1.46507 * 119.99799 * 358.95101 * 12 10 9 14 14 C 1.46496 * 120.00290 * 178.94561 * 12 10 9 15 15 C 1.53949 * 113.84051 * 141.35049 * 14 12 10 16 16 N 1.47583 * 86.11629 * 90.75524 * 15 14 12 17 17 C 1.36935 * 134.49416 * 204.64831 * 16 15 14 18 18 H 1.08000 * 119.99799 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99899 * 359.97438 * 17 16 15 20 20 N 1.31622 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47318 * 60.00123 * 21 19 17 23 23 H 1.48498 * 109.47484 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47277 * 300.00460 * 21 19 17 25 25 C 1.47582 * 91.01261 * 24.63864 * 16 15 14 26 26 H 1.08999 * 109.47310 * 296.05074 * 1 2 3 27 27 H 1.09001 * 109.46893 * 56.04500 * 1 2 3 28 28 H 1.08999 * 109.47816 * 176.04685 * 1 2 3 29 29 H 1.09003 * 109.46788 * 183.95614 * 3 2 1 30 30 H 1.08997 * 109.46649 * 303.94912 * 3 2 1 31 31 H 1.08998 * 109.47443 * 63.95246 * 3 2 1 32 32 H 1.09006 * 109.47095 * 306.04980 * 4 2 1 33 33 H 1.08998 * 109.47251 * 186.04321 * 4 2 1 34 34 H 1.07998 * 122.45198 * 0.04590 * 6 5 4 35 35 H 1.07997 * 124.52381 * 179.77384 * 7 6 5 36 36 H 1.09003 * 109.46921 * 276.34579 * 13 12 10 37 37 H 1.08999 * 109.46914 * 36.34490 * 13 12 10 38 38 H 1.08999 * 109.47129 * 156.34515 * 13 12 10 39 39 H 1.08998 * 112.94276 * 9.67421 * 14 12 10 40 40 H 1.08997 * 113.77126 * 205.06109 * 15 14 12 41 41 H 1.09008 * 113.76683 * 336.45898 * 15 14 12 42 42 H 0.97005 * 120.00029 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.77481 * 221.05277 * 25 16 15 44 44 H 1.09010 * 113.76331 * 89.65990 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6368 -2.2204 0.9730 6 6 0.5822 -2.8170 1.6225 7 6 0.4168 -4.1187 1.3598 8 16 1.5946 -4.6730 0.2568 9 6 2.3251 -3.0765 0.1603 10 6 3.4896 -2.7221 -0.6563 11 8 4.0160 -1.6327 -0.5252 12 7 3.9776 -3.6029 -1.5522 13 6 3.3582 -4.9230 -1.6938 14 6 5.1272 -3.2402 -2.3847 15 6 6.1212 -4.3940 -2.6098 16 7 5.3240 -4.7132 -3.8100 17 6 5.1116 -5.8474 -4.5474 18 1 4.4624 -5.8170 -5.4099 19 6 5.7315 -7.0358 -4.1867 20 7 6.5231 -7.0727 -3.1358 21 14 5.4423 -8.5829 -5.1929 22 1 5.8891 -8.3551 -6.5907 23 1 6.2133 -9.7074 -4.6045 24 1 3.9951 -8.9160 -5.1840 25 6 4.8475 -3.3191 -3.8963 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3635 -1.0252 -0.0708 29 1 3.0828 1.3431 -0.0709 30 1 1.5898 1.9162 -0.8525 31 1 1.7044 1.8724 0.9232 32 1 1.5610 -0.3872 2.0629 33 1 3.0796 -0.6611 1.1757 34 1 -0.0633 -2.2757 2.2983 35 1 -0.3590 -4.7359 1.7883 36 1 3.7614 -5.5965 -0.9375 37 1 2.2797 -4.8341 -1.5634 38 1 3.5727 -5.3205 -2.6858 39 1 5.5997 -2.3084 -2.0738 40 1 7.1358 -4.0630 -2.8314 41 1 6.0824 -5.1639 -1.8391 42 1 6.9560 -7.9034 -2.8835 43 1 3.7918 -3.2307 -4.1530 44 1 5.4880 -2.6723 -4.4961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042821798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:58 Heat of formation + Delta-G solvation = 68.505334 kcal Electronic energy + Delta-G solvation = -26052.519025 eV Core-core repulsion = 22520.014917 eV Total energy + Delta-G solvation = -3532.504108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33471 -39.97135 -38.67755 -37.16238 -35.60892 -34.04295 -31.30768 -29.89522 -28.70028 -28.37752 -27.74594 -26.55249 -25.41822 -24.55120 -22.64808 -22.49133 -20.22241 -19.37017 -19.07975 -18.55681 -17.29439 -16.95480 -16.69034 -16.64790 -16.13727 -16.00900 -15.85034 -15.51113 -15.09633 -14.96421 -14.54525 -14.09165 -13.92885 -13.91525 -13.74218 -13.50050 -13.24597 -13.18350 -13.02507 -12.88524 -12.70664 -12.56422 -12.44509 -12.42580 -12.29116 -11.97833 -11.62287 -11.44586 -11.33530 -10.93942 -10.67174 -9.82018 -9.56194 -9.29041 -9.10891 -8.84839 -7.84536 -5.18896 -0.37795 0.60436 1.11464 1.45557 1.51178 1.52865 1.58884 2.01804 2.22629 2.50898 3.24890 3.30108 3.43664 3.64831 3.88999 3.97273 4.10485 4.21206 4.31134 4.39404 4.44806 4.50198 4.55557 4.58106 4.62785 4.67487 4.76096 4.80125 4.85441 4.90317 5.03095 5.06235 5.06788 5.08565 5.24559 5.30845 5.37985 5.42888 5.52128 5.75578 5.94169 6.13364 6.22575 6.51019 6.95794 7.19501 7.64833 8.58834 9.30792 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003869 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.939486 B = 7234.564144 C = 8165.723546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.034 3.966 4 C 0.115 3.885 5 C -0.022 4.022 6 C -0.152 4.152 7 C -0.249 4.249 8 S 0.240 5.760 9 C -0.282 4.282 10 C 0.585 3.415 11 O -0.552 6.552 12 N -0.582 5.582 13 C 0.072 3.928 14 C 0.111 3.889 15 C 0.154 3.846 16 N -0.625 5.625 17 C -0.233 4.233 18 H 0.083 0.917 19 C -0.053 4.053 20 N -0.946 5.946 21 Si 0.970 3.030 22 H -0.284 1.284 23 H -0.298 1.298 24 H -0.272 1.272 25 C 0.112 3.888 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.193 0.807 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.248 0.752 43 H 0.052 0.948 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 10.023 10.801 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.114 4.114 4 C -0.014 4.014 5 C -0.039 4.039 6 C -0.182 4.182 7 C -0.386 4.386 8 S 0.510 5.490 9 C -0.403 4.403 10 C 0.375 3.625 11 O -0.433 6.433 12 N -0.312 5.312 13 C -0.072 4.072 14 C 0.006 3.994 15 C 0.028 3.972 16 N -0.352 5.352 17 C -0.360 4.360 18 H 0.100 0.900 19 C -0.247 4.247 20 N -0.594 5.594 21 Si 0.799 3.201 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.198 1.198 25 C -0.014 4.014 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.210 0.790 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.245 8.594 9.702 19.258 hybrid contribution -0.121 0.613 0.660 0.909 sum -14.366 9.207 10.361 19.962 Atomic orbital electron populations 1.22412 0.86579 1.02117 1.01005 1.61782 1.08554 1.14484 1.43126 1.22287 1.00422 0.87719 1.00931 1.20741 1.00929 0.87942 0.91768 1.19462 0.93951 0.96216 0.94285 1.19967 0.99388 0.94763 1.04121 1.26202 1.07158 1.00699 1.04546 1.83980 1.21251 1.07544 1.36237 1.24351 1.05454 0.99985 1.10467 1.17281 0.82570 0.83653 0.79010 1.90701 1.60984 1.22726 1.68899 1.47281 1.31244 1.15507 1.37170 1.22070 0.96025 0.83429 1.05702 1.22591 0.87382 0.98489 0.90956 1.22522 0.92492 0.92703 0.89463 1.46360 1.53144 1.03929 1.31766 1.19265 1.23283 0.86006 1.07495 0.89957 1.25447 0.99493 1.00312 0.99416 1.69987 1.34843 1.26363 1.28243 0.85289 0.77770 0.79208 0.77850 1.21099 1.22388 1.19813 1.23106 0.98484 0.86010 0.93846 0.94421 0.91103 0.91993 0.92533 0.90763 0.94554 0.92574 0.90321 0.82282 0.79007 0.92837 0.90393 0.87714 0.87986 0.95233 0.92876 0.94288 0.92951 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.33 127.69 1.19 1.72 16 2 N -0.56 -14.04 5.01 -953.47 -4.78 -18.81 16 3 C 0.03 0.74 9.57 127.69 1.22 1.96 16 4 C 0.12 2.95 4.44 85.56 0.38 3.33 16 5 C -0.02 -0.59 4.54 -20.42 -0.09 -0.68 16 6 C -0.15 -3.03 9.16 21.09 0.19 -2.84 16 7 C -0.25 -4.65 10.92 66.82 0.73 -3.92 16 8 S 0.24 5.84 17.92 -56.49 -1.01 4.83 16 9 C -0.28 -8.63 6.24 24.07 0.15 -8.48 16 10 C 0.58 21.69 7.62 86.42 0.66 22.35 16 11 O -0.55 -22.38 13.93 -4.35 -0.06 -22.44 16 12 N -0.58 -22.29 3.09 -833.13 -2.58 -24.87 16 13 C 0.07 2.67 8.01 127.77 1.02 3.69 16 14 C 0.11 4.48 4.53 46.75 0.21 4.70 16 15 C 0.15 7.28 6.77 86.48 0.59 7.87 16 16 N -0.62 -30.46 2.26 -717.30 -1.62 -32.08 16 17 C -0.23 -12.27 9.68 84.03 0.81 -11.45 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 19 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 20 N -0.95 -54.17 11.38 21.65 0.25 -53.92 16 21 Si 0.97 43.67 29.55 68.60 2.03 45.69 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 C 0.11 4.56 8.39 86.48 0.73 5.28 16 26 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 28 H 0.06 1.28 6.70 -2.39 -0.02 1.26 16 29 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 30 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 1.16 8.08 -2.38 -0.02 1.14 16 33 H 0.08 2.42 6.38 -2.39 -0.02 2.41 16 34 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.05 2.00 7.81 -2.39 -0.02 1.98 16 37 H 0.08 2.47 4.52 -20.98 -0.09 2.37 16 38 H 0.10 4.56 5.07 -2.39 -0.01 4.55 16 39 H 0.10 4.02 7.21 -2.39 -0.02 4.00 16 40 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 2.78 6.90 -2.38 -0.02 2.76 16 42 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -64.28 359.16 1.40 -62.87 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.92 Total: 17.58 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 8.26 Total: 21.15 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -8.73 Total: -129.68 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.01 Total: 4.83 kcal Total: -64.28 1.40 -62.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042821798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.379 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds