Wall clock time and date at job start Tue Mar 31 2020 14:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99649 * 2 1 4 4 H 1.48498 * 109.47293 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 119.99879 * 3 2 1 6 6 H 1.48496 * 109.47059 * 239.99940 * 3 2 1 7 7 C 1.38809 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99739 * 174.97716 * 7 2 1 9 9 N 1.36935 * 120.00049 * 354.98212 * 7 2 1 10 10 C 1.48290 * 128.21074 * 334.73788 * 9 7 2 11 11 H 1.09003 * 112.20494 * 343.89318 * 10 9 7 12 12 C 1.54612 * 104.25939 * 221.64205 * 10 9 7 13 13 C 1.53793 * 104.84767 * 334.97340 * 12 10 9 14 14 C 1.48300 * 128.20821 * 155.06219 * 9 7 2 15 15 H 1.09000 * 112.20763 * 16.09904 * 14 9 7 16 16 C 1.53705 * 107.27319 * 252.55651 * 14 9 7 17 17 C 1.53140 * 108.87792 * 295.99502 * 16 14 9 18 18 H 1.09008 * 109.43281 * 173.95539 * 17 16 14 19 19 C 1.52999 * 109.43617 * 293.82483 * 17 16 14 20 20 N 1.46500 * 109.46900 * 299.91976 * 19 17 16 21 21 C 1.34777 * 120.00072 * 179.97438 * 20 19 17 22 22 O 1.21288 * 119.99778 * 0.02562 * 21 20 19 23 23 C 1.50693 * 120.00112 * 179.97438 * 21 20 19 24 24 H 1.09005 * 115.55044 * 34.42759 * 23 21 20 25 25 C 1.53005 * 117.50268 * 248.74900 * 23 21 20 26 26 C 1.53006 * 117.50078 * 180.08729 * 23 21 20 27 27 H 1.09006 * 117.49356 * 359.97438 * 26 23 21 28 28 N 1.46493 * 117.50182 * 214.98549 * 26 23 21 29 29 O 1.21801 * 120.00351 * 119.99959 * 28 26 23 30 30 O 1.21802 * 120.00231 * 299.99965 * 28 26 23 31 31 C 1.53153 * 109.69112 * 53.89364 * 17 16 14 32 32 H 0.96998 * 120.00242 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.38536 * 93.67853 * 12 10 9 34 34 H 1.09000 * 110.38032 * 216.04662 * 12 10 9 35 35 H 1.09001 * 110.43537 * 241.09801 * 13 12 10 36 36 H 1.09003 * 110.24096 * 118.80256 * 13 12 10 37 37 H 1.09005 * 109.56720 * 55.81560 * 16 14 9 38 38 H 1.08999 * 109.56589 * 176.17391 * 16 14 9 39 39 H 1.08991 * 109.47109 * 59.92154 * 19 17 16 40 40 H 1.09004 * 109.47155 * 179.97438 * 19 17 16 41 41 H 0.96996 * 120.00169 * 0.02562 * 20 19 17 42 42 H 1.08993 * 117.49489 * 0.02562 * 25 23 21 43 43 H 1.08997 * 117.49934 * 145.02197 * 25 23 21 44 44 H 1.09004 * 109.57097 * 65.92553 * 31 17 16 45 45 H 1.09007 * 109.56777 * 186.16723 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 -0.0814 9 7 1.3296 -2.3857 0.1048 10 6 0.0004 -2.6287 0.7158 11 1 -0.3170 -1.8033 1.3531 12 6 0.1763 -3.9516 1.4965 13 6 1.3307 -4.6780 0.7860 14 6 1.7497 -3.7296 -0.3608 15 1 2.8173 -3.7759 -0.5760 16 6 0.8961 -4.0736 -1.5918 17 6 -0.5713 -4.1733 -1.1651 18 1 -1.1970 -4.3105 -2.0471 19 6 -0.7482 -5.3679 -0.2256 20 7 -0.3582 -6.5974 -0.9203 21 6 -0.4314 -7.7832 -0.2839 22 8 -0.8205 -7.8324 0.8638 23 6 -0.0308 -9.0479 -0.9986 24 1 0.7919 -8.9474 -1.7067 25 6 -1.1376 -10.0480 -1.3390 26 6 -0.1383 -10.3622 -0.2228 27 1 -0.4983 -10.3120 0.8049 28 7 0.8719 -11.3893 -0.4887 29 8 1.5875 -11.7876 0.4128 30 8 0.9962 -11.8450 -1.6114 31 6 -0.9864 -2.8894 -0.4406 32 1 -0.4850 0.8400 0.0004 33 1 0.4408 -3.7478 2.5341 34 1 -0.7358 -4.5462 1.4461 35 1 0.9899 -5.6322 0.3841 36 1 2.1613 -4.8305 1.4752 37 1 1.0057 -3.2908 -2.3424 38 1 1.2214 -5.0277 -2.0065 39 1 -0.1205 -5.2335 0.6552 40 1 -1.7924 -5.4392 0.0788 41 1 -0.0467 -6.5579 -1.8380 42 1 -2.1555 -9.7909 -1.0462 43 1 -1.0429 -10.6056 -2.2707 44 1 -0.9630 -2.0525 -1.1386 45 1 -1.9945 -3.0046 -0.0423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048525611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:23 Heat of formation + Delta-G solvation = 103.366650 kcal Electronic energy + Delta-G solvation = -28628.648481 eV Core-core repulsion = 24654.903201 eV Total energy + Delta-G solvation = -3973.745279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.60622 -41.44643 -39.76504 -37.17968 -36.50498 -34.95130 -32.92964 -31.60391 -30.77062 -29.83761 -28.34917 -26.94045 -24.80372 -23.46728 -23.21970 -22.54571 -20.83780 -20.70816 -19.55216 -19.38325 -18.86595 -18.71913 -17.90038 -17.27710 -17.03690 -16.16544 -15.72126 -15.17587 -14.85997 -14.35777 -14.01642 -13.66438 -13.21879 -13.07957 -12.81144 -12.74136 -12.15919 -12.04153 -11.81666 -11.78122 -11.76253 -11.61085 -11.47995 -11.37483 -11.36317 -11.27181 -10.91520 -10.86429 -10.62349 -10.31276 -10.20893 -9.84411 -9.79414 -9.58480 -9.46562 -9.30344 -8.66050 -8.35202 -6.76556 -5.87044 -3.25906 0.13032 1.20462 1.98068 2.72683 2.91480 3.33624 3.37094 3.39120 3.39573 3.69355 4.08560 4.39566 4.41300 4.67793 4.91646 5.01215 5.11648 5.19001 5.31925 5.39319 5.49281 5.64622 5.71481 5.79696 5.95458 5.98758 6.01048 6.03369 6.18214 6.24386 6.29373 6.41841 6.53046 6.55733 6.63119 6.77013 6.87039 6.98083 7.03926 7.29594 7.31225 7.46760 7.54960 7.69696 7.94270 8.18863 9.06112 9.67308 10.51145 11.26764 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.002772 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.332345 B =10097.227762 C =10332.903493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.004 3.996 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.581 5.581 10 C 0.186 3.814 11 H 0.097 0.903 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.150 3.850 15 H 0.065 0.935 16 C -0.123 4.123 17 C -0.086 4.086 18 H 0.051 0.949 19 C 0.000 4.000 20 N -0.705 5.705 21 C 0.535 3.465 22 O -0.535 6.535 23 C -0.145 4.145 24 H 0.145 0.855 25 C -0.108 4.108 26 C -0.063 4.063 27 H 0.187 0.813 28 N 0.011 4.989 29 O -0.150 6.150 30 O -0.164 6.164 31 C -0.109 4.109 32 H 0.254 0.746 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.198 0.802 40 H 0.053 0.947 41 H 0.398 0.602 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.087 0.913 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 -16.608 -4.009 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.194 4.194 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.360 4.360 8 H 0.087 0.913 9 N -0.302 5.302 10 C 0.079 3.921 11 H 0.115 0.885 12 C -0.211 4.211 13 C -0.201 4.201 14 C 0.042 3.958 15 H 0.083 0.917 16 C -0.163 4.163 17 C -0.105 4.105 18 H 0.070 0.930 19 C -0.118 4.118 20 N -0.355 5.355 21 C 0.319 3.681 22 O -0.413 6.413 23 C -0.167 4.167 24 H 0.163 0.837 25 C -0.146 4.146 26 C -0.162 4.162 27 H 0.204 0.796 28 N 0.533 4.467 29 O -0.370 6.370 30 O -0.381 6.381 31 C -0.149 4.149 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.213 0.787 40 H 0.071 0.929 41 H 0.233 0.767 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.106 0.894 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.673 -15.757 -3.071 16.719 hybrid contribution 0.671 0.693 -0.737 1.214 sum -4.002 -15.064 -3.808 16.045 Atomic orbital electron populations 1.69869 1.04988 1.25487 1.54768 1.25030 0.95613 0.97887 1.00920 0.86279 0.78686 0.83182 0.78019 1.21609 1.21082 1.21038 1.18860 0.89930 0.82090 1.45074 0.91271 1.45053 1.18346 1.02051 1.64781 1.21409 0.86313 0.92570 0.91834 0.88532 1.23414 0.97843 0.99906 0.99951 1.23308 0.98083 0.99542 0.99123 1.21533 0.96111 0.87172 0.91013 0.91681 1.22188 0.95139 0.99163 0.99802 1.21293 0.97038 0.94976 0.97172 0.93011 1.25439 1.03114 0.81149 1.02057 1.46286 1.65368 1.06687 1.17139 1.19046 0.78966 0.83678 0.86435 1.90759 1.47017 1.86527 1.16963 1.22866 1.04390 0.88438 1.01008 0.83712 1.23664 0.95657 0.97275 0.98015 1.25027 0.96031 0.91295 1.03891 0.79646 1.43807 1.01196 1.01251 1.00439 1.94598 1.41289 1.62710 1.38433 1.94540 1.74842 1.59807 1.08942 1.22144 0.97292 0.95280 1.00141 0.93573 0.92551 0.89471 0.89177 0.92909 0.91608 0.94305 0.78656 0.92857 0.76740 0.84800 0.84359 0.89427 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.50 10.33 55.49 0.57 -23.93 16 2 C 0.00 0.10 5.43 -17.43 -0.09 0.01 16 3 Si 0.91 21.03 29.56 -169.99 -5.02 16.00 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.03 10.34 -15.06 -0.16 -6.19 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 9 N -0.58 -13.51 2.78 -152.44 -0.42 -13.93 16 10 C 0.19 3.99 3.13 -65.45 -0.20 3.78 16 11 H 0.10 2.40 6.91 -51.93 -0.36 2.04 16 12 C -0.17 -3.10 5.70 -25.47 -0.15 -3.25 16 13 C -0.16 -2.74 5.70 -25.48 -0.15 -2.89 16 14 C 0.15 2.84 4.32 -65.73 -0.28 2.55 16 15 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 16 C -0.12 -2.03 5.27 -26.29 -0.14 -2.17 16 17 C -0.09 -1.35 2.76 -90.47 -0.25 -1.60 16 18 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 19 C 0.00 0.00 2.68 -4.04 -0.01 -0.01 16 20 N -0.70 -7.84 4.38 -60.30 -0.26 -8.10 16 21 C 0.54 6.06 7.37 -10.99 -0.08 5.97 16 22 O -0.53 -7.96 16.26 5.55 0.09 -7.87 16 23 C -0.14 -1.16 6.08 -91.77 -0.56 -1.72 16 24 H 0.15 0.95 8.14 -51.93 -0.42 0.53 16 25 C -0.11 -0.64 9.72 -26.69 -0.26 -0.90 16 26 C -0.06 -0.55 6.43 -67.89 -0.44 -0.98 16 27 H 0.19 1.65 7.67 -51.93 -0.40 1.25 16 28 N 0.01 0.13 4.33 -4.86 -0.02 0.10 16 29 O -0.15 -1.94 19.24 -29.46 -0.57 -2.51 16 30 O -0.16 -1.86 18.28 -29.46 -0.54 -2.40 16 31 C -0.11 -2.12 5.21 -26.00 -0.14 -2.25 16 32 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.44 4.85 -51.93 -0.25 1.18 16 35 H 0.09 1.37 3.95 -51.93 -0.21 1.16 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.04 0.51 6.72 -51.93 -0.35 0.16 16 39 H 0.20 3.05 1.11 -166.08 -0.18 2.86 16 40 H 0.05 0.79 8.01 -51.93 -0.42 0.37 16 41 H 0.40 3.56 7.32 -40.82 -0.30 3.26 16 42 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.14 0.63 7.63 -51.93 -0.40 0.23 16 44 H 0.09 2.02 7.39 -51.93 -0.38 1.64 16 45 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -29.69 349.47 -9.98 -39.67 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.17 Total: 7.33 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.90 Total: -9.64 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.14 Total: -45.86 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.02 Total: -12.78 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.69 -9.98 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048525611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.036 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds