Wall clock time and date at job start Tue Mar 31 2020 14:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99649 * 2 1 4 4 H 1.48498 * 109.47293 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 119.99879 * 3 2 1 6 6 H 1.48496 * 109.47059 * 239.99940 * 3 2 1 7 7 C 1.38809 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99739 * 174.97716 * 7 2 1 9 9 N 1.36935 * 120.00049 * 354.98212 * 7 2 1 10 10 C 1.48290 * 128.21074 * 334.73788 * 9 7 2 11 11 H 1.09003 * 112.20494 * 343.89318 * 10 9 7 12 12 C 1.54612 * 104.25939 * 221.64205 * 10 9 7 13 13 C 1.53793 * 104.84767 * 334.97340 * 12 10 9 14 14 C 1.48300 * 128.20821 * 155.06219 * 9 7 2 15 15 H 1.09000 * 112.20763 * 16.09904 * 14 9 7 16 16 C 1.53705 * 107.27319 * 252.55651 * 14 9 7 17 17 C 1.53140 * 108.87792 * 295.99502 * 16 14 9 18 18 H 1.09008 * 109.43281 * 173.95539 * 17 16 14 19 19 C 1.52999 * 109.43617 * 293.82483 * 17 16 14 20 20 N 1.46500 * 109.46900 * 299.91976 * 19 17 16 21 21 C 1.34777 * 120.00072 * 179.97438 * 20 19 17 22 22 O 1.21288 * 119.99778 * 0.02562 * 21 20 19 23 23 C 1.50693 * 120.00112 * 179.97438 * 21 20 19 24 24 H 1.09005 * 115.55044 * 34.42759 * 23 21 20 25 25 C 1.53005 * 117.50268 * 248.74900 * 23 21 20 26 26 C 1.53006 * 117.50078 * 180.08729 * 23 21 20 27 27 H 1.09006 * 117.49356 * 359.97438 * 26 23 21 28 28 N 1.46493 * 117.50182 * 214.98549 * 26 23 21 29 29 O 1.21801 * 120.00351 * 119.99959 * 28 26 23 30 30 O 1.21802 * 120.00231 * 299.99965 * 28 26 23 31 31 C 1.53153 * 109.69112 * 53.89364 * 17 16 14 32 32 H 0.96998 * 120.00242 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.38536 * 93.67853 * 12 10 9 34 34 H 1.09000 * 110.38032 * 216.04662 * 12 10 9 35 35 H 1.09001 * 110.43537 * 241.09801 * 13 12 10 36 36 H 1.09003 * 110.24096 * 118.80256 * 13 12 10 37 37 H 1.09005 * 109.56720 * 55.81560 * 16 14 9 38 38 H 1.08999 * 109.56589 * 176.17391 * 16 14 9 39 39 H 1.08991 * 109.47109 * 59.92154 * 19 17 16 40 40 H 1.09004 * 109.47155 * 179.97438 * 19 17 16 41 41 H 0.96996 * 120.00169 * 0.02562 * 20 19 17 42 42 H 1.08993 * 117.49489 * 0.02562 * 25 23 21 43 43 H 1.08997 * 117.49934 * 145.02197 * 25 23 21 44 44 H 1.09004 * 109.57097 * 65.92553 * 31 17 16 45 45 H 1.09007 * 109.56777 * 186.16723 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 -0.0814 9 7 1.3296 -2.3857 0.1048 10 6 0.0004 -2.6287 0.7158 11 1 -0.3170 -1.8033 1.3531 12 6 0.1763 -3.9516 1.4965 13 6 1.3307 -4.6780 0.7860 14 6 1.7497 -3.7296 -0.3608 15 1 2.8173 -3.7759 -0.5760 16 6 0.8961 -4.0736 -1.5918 17 6 -0.5713 -4.1733 -1.1651 18 1 -1.1970 -4.3105 -2.0471 19 6 -0.7482 -5.3679 -0.2256 20 7 -0.3582 -6.5974 -0.9203 21 6 -0.4314 -7.7832 -0.2839 22 8 -0.8205 -7.8324 0.8638 23 6 -0.0308 -9.0479 -0.9986 24 1 0.7919 -8.9474 -1.7067 25 6 -1.1376 -10.0480 -1.3390 26 6 -0.1383 -10.3622 -0.2228 27 1 -0.4983 -10.3120 0.8049 28 7 0.8719 -11.3893 -0.4887 29 8 1.5875 -11.7876 0.4128 30 8 0.9962 -11.8450 -1.6114 31 6 -0.9864 -2.8894 -0.4406 32 1 -0.4850 0.8400 0.0004 33 1 0.4408 -3.7478 2.5341 34 1 -0.7358 -4.5462 1.4461 35 1 0.9899 -5.6322 0.3841 36 1 2.1613 -4.8305 1.4752 37 1 1.0057 -3.2908 -2.3424 38 1 1.2214 -5.0277 -2.0065 39 1 -0.1205 -5.2335 0.6552 40 1 -1.7924 -5.4392 0.0788 41 1 -0.0467 -6.5579 -1.8380 42 1 -2.1555 -9.7909 -1.0462 43 1 -1.0429 -10.6056 -2.2707 44 1 -0.9630 -2.0525 -1.1386 45 1 -1.9945 -3.0046 -0.0423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048525611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:22 Heat of formation + Delta-G solvation = 86.005409 kcal Electronic energy + Delta-G solvation = -28629.401321 eV Core-core repulsion = 24654.903201 eV Total energy + Delta-G solvation = -3974.498119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.39970 -42.76912 -40.74183 -37.96559 -37.33169 -36.22971 -34.58626 -33.01662 -32.33763 -31.44792 -29.28247 -28.26509 -26.02022 -24.90063 -24.55879 -23.27781 -22.19061 -21.73126 -20.95354 -20.49197 -20.08213 -19.48649 -18.85050 -18.65363 -17.98579 -17.52148 -16.90169 -16.50581 -16.13260 -15.79630 -15.15503 -14.66270 -14.48794 -14.47460 -14.21749 -13.74719 -13.71012 -13.36319 -13.14991 -13.07389 -12.85905 -12.74669 -12.70310 -12.59475 -12.53599 -12.39209 -12.30408 -12.24780 -12.07574 -12.00402 -11.55195 -11.31314 -11.13296 -11.01773 -10.87608 -10.82122 -10.50492 -9.56610 -8.61368 -7.86555 -5.24894 -0.72580 0.47487 1.21170 1.46483 1.47387 1.53464 1.95149 2.18928 2.49744 2.70173 3.13033 3.32217 3.45694 3.59498 3.68020 3.93500 3.94149 4.03843 4.12324 4.22806 4.27176 4.36590 4.50585 4.53928 4.58535 4.61804 4.70662 4.77395 4.88545 4.98299 5.02549 5.09550 5.16596 5.19013 5.27348 5.39089 5.44000 5.51824 5.55101 5.61829 5.76412 5.93446 6.30799 6.42195 6.44769 7.09016 7.10980 7.75649 8.61153 9.25579 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.002772 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.332345 B =10097.227762 C =10332.903493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.295 1.295 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.066 0.934 9 N -0.605 5.605 10 C 0.179 3.821 11 H 0.051 0.949 12 C -0.163 4.163 13 C -0.149 4.149 14 C 0.140 3.860 15 H 0.062 0.938 16 C -0.115 4.115 17 C -0.075 4.075 18 H 0.073 0.927 19 C 0.013 3.987 20 N -0.697 5.697 21 C 0.538 3.462 22 O -0.572 6.572 23 C -0.140 4.140 24 H 0.167 0.833 25 C -0.076 4.076 26 C -0.080 4.080 27 H 0.179 0.821 28 N 0.017 4.983 29 O -0.210 6.210 30 O -0.142 6.142 31 C -0.102 4.102 32 H 0.247 0.753 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.183 0.817 40 H 0.054 0.946 41 H 0.413 0.587 42 H 0.149 0.851 43 H 0.162 0.838 44 H 0.045 0.955 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -18.952 -5.840 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.221 1.221 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.083 0.917 9 N -0.328 5.328 10 C 0.073 3.927 11 H 0.069 0.931 12 C -0.202 4.202 13 C -0.187 4.187 14 C 0.033 3.967 15 H 0.081 0.919 16 C -0.154 4.154 17 C -0.093 4.093 18 H 0.092 0.908 19 C -0.106 4.106 20 N -0.348 5.348 21 C 0.323 3.677 22 O -0.452 6.452 23 C -0.162 4.162 24 H 0.185 0.815 25 C -0.113 4.113 26 C -0.180 4.180 27 H 0.197 0.803 28 N 0.535 4.465 29 O -0.417 6.417 30 O -0.369 6.369 31 C -0.142 4.142 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.198 0.802 40 H 0.072 0.928 41 H 0.251 0.749 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.064 0.936 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.986 -18.141 -4.819 19.421 hybrid contribution 0.745 1.415 -0.233 1.616 sum -4.240 -16.726 -5.052 17.980 Atomic orbital electron populations 1.70045 1.05934 1.25288 1.56003 1.25681 0.96402 1.00536 1.01650 0.85366 0.77418 0.79758 0.77958 1.22138 1.20964 1.20470 1.19119 0.90152 0.83688 1.44187 0.91664 1.45255 1.18856 1.02801 1.65847 1.21341 0.86230 0.92804 0.92368 0.93078 1.23376 0.99405 0.98353 0.99019 1.23251 0.97460 0.99834 0.98163 1.21784 0.96573 0.85444 0.92868 0.91949 1.22067 0.95084 1.00427 0.97845 1.21131 0.96813 0.93611 0.97787 0.90832 1.24906 1.02911 0.81691 1.01108 1.46040 1.65285 1.05705 1.17754 1.19460 0.77870 0.84404 0.85937 1.90763 1.48536 1.87117 1.18766 1.22832 1.06291 0.86386 1.00666 0.81513 1.23958 0.95402 0.94616 0.97368 1.25130 0.96699 0.91256 1.04905 0.80345 1.44097 1.01091 1.01287 0.99995 1.94618 1.43332 1.64847 1.38889 1.94502 1.74189 1.59260 1.08900 1.21929 0.97399 0.96037 0.98812 0.94421 0.93323 0.87356 0.86612 0.93037 0.94265 0.89894 0.80199 0.92803 0.74932 0.83279 0.82056 0.93583 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.32 10.33 21.65 0.22 -52.09 16 2 C -0.05 -2.56 5.43 84.86 0.46 -2.10 16 3 Si 0.97 44.43 29.56 68.60 2.03 46.46 16 4 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.00 10.34 84.03 0.87 -12.13 16 8 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.61 -28.73 2.78 -636.20 -1.77 -30.50 16 10 C 0.18 7.90 3.13 45.62 0.14 8.04 16 11 H 0.05 2.69 6.91 -2.39 -0.02 2.67 16 12 C -0.16 -5.78 5.70 31.41 0.18 -5.60 16 13 C -0.15 -4.78 5.70 31.41 0.18 -4.60 16 14 C 0.14 5.17 4.32 45.43 0.20 5.37 16 15 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.11 -3.52 5.27 30.88 0.16 -3.36 16 17 C -0.07 -2.18 2.76 -10.70 -0.03 -2.20 16 18 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 19 C 0.01 0.33 2.68 86.38 0.23 0.56 16 20 N -0.70 -12.41 4.38 -463.07 -2.03 -14.44 16 21 C 0.54 10.09 7.37 87.65 0.65 10.74 16 22 O -0.57 -15.44 16.26 -3.05 -0.05 -15.49 16 23 C -0.14 -1.63 6.08 -11.54 -0.07 -1.70 16 24 H 0.17 1.29 8.14 -2.38 -0.02 1.27 16 25 C -0.08 -0.53 9.72 30.62 0.30 -0.24 16 26 C -0.08 -1.17 6.43 45.02 0.29 -0.88 16 27 H 0.18 2.90 7.67 -2.38 -0.02 2.89 16 28 N 0.02 0.34 4.33 -169.28 -0.73 -0.40 16 29 O -0.21 -5.39 19.24 18.88 0.36 -5.02 16 30 O -0.14 -2.76 18.28 18.88 0.35 -2.42 16 31 C -0.10 -3.99 5.21 31.07 0.16 -3.83 16 32 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 3.39 4.85 -2.39 -0.01 3.38 16 35 H 0.12 3.13 3.95 -2.39 -0.01 3.12 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.42 8.14 -2.38 -0.02 1.41 16 38 H 0.08 1.82 6.72 -2.39 -0.02 1.80 16 39 H 0.18 5.13 1.11 -109.61 -0.12 5.01 16 40 H 0.05 1.41 8.01 -2.39 -0.02 1.39 16 41 H 0.41 5.10 7.32 -92.71 -0.68 4.42 16 42 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.16 0.51 7.63 -2.39 -0.02 0.49 16 44 H 0.05 2.19 7.39 -2.38 -0.02 2.17 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -68.65 349.47 2.34 -66.31 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.24 Total: 19.52 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 3.72 Total: -11.93 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.31 Total: -97.43 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.66 Total: -22.93 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.65 2.34 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048525611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.319 kcal (2) G-P(sol) polarization free energy of solvation -68.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds