Wall clock time and date at job start Tue Mar 31 2020 14:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99876 * 2 1 4 4 H 1.48500 * 109.47068 * 239.99967 * 3 2 1 5 5 H 1.48496 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46982 * 119.99816 * 3 2 1 7 7 C 1.38813 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00062 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99579 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65165 * 359.97016 * 9 7 2 11 11 C 1.54905 * 104.92834 * 155.84166 * 10 9 7 12 12 H 1.09002 * 111.00852 * 155.13877 * 11 10 9 13 13 F 1.39902 * 111.00828 * 278.99333 * 11 10 9 14 14 C 1.55448 * 101.45165 * 37.00468 * 11 10 9 15 15 C 1.47026 * 125.64258 * 180.02562 * 9 7 2 16 16 H 1.08998 * 109.88266 * 300.44821 * 15 9 7 17 17 C 1.50700 * 109.88513 * 61.61891 * 15 9 7 18 18 N 1.30710 * 125.52633 * 43.56610 * 17 15 9 19 19 N 1.40442 * 106.79496 * 179.97438 * 18 17 15 20 20 H 0.97003 * 126.82892 * 179.97438 * 19 18 17 21 21 C 1.34437 * 106.35082 * 359.97438 * 19 18 17 22 22 C 1.50702 * 125.95951 * 180.02562 * 21 19 18 23 23 N 1.46492 * 109.46968 * 94.97926 * 22 21 19 24 24 C 1.34785 * 119.99705 * 179.97438 * 23 22 21 25 25 O 1.21276 * 120.00038 * 359.97438 * 24 23 22 26 26 C 1.50699 * 119.99691 * 180.02562 * 24 23 22 27 27 C 1.53005 * 117.50058 * 248.74672 * 26 24 23 28 28 C 1.53001 * 117.49648 * 180.08678 * 26 24 23 29 29 N 1.30827 * 108.07478 * 359.75948 * 21 19 18 30 30 H 0.96996 * 120.00198 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36926 * 274.73635 * 10 9 7 32 32 H 1.08995 * 110.36556 * 36.94919 * 10 9 7 33 33 H 1.08998 * 110.70855 * 206.14575 * 14 11 10 34 34 H 1.08998 * 110.85957 * 82.96191 * 14 11 10 35 35 H 1.09003 * 109.46827 * 214.97832 * 22 21 19 36 36 H 1.09001 * 109.46941 * 334.97531 * 22 21 19 37 37 H 0.96999 * 120.00332 * 0.02562 * 23 22 21 38 38 H 1.09006 * 115.55254 * 34.41840 * 26 24 23 39 39 H 1.09000 * 117.49332 * 359.97438 * 27 26 24 40 40 H 1.08992 * 117.49859 * 145.02103 * 27 26 24 41 41 H 1.09004 * 117.49856 * 214.97726 * 28 26 24 42 42 H 1.08995 * 117.49897 * 359.97426 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1414 -2.5332 -0.0016 11 6 -0.4042 -3.9309 -0.6155 12 1 -1.3623 -4.3301 -0.2827 13 9 -0.3402 -3.8853 -2.0123 14 6 0.7785 -4.7524 -0.0300 15 6 1.9319 -3.7275 -0.0017 16 1 2.5587 -3.8506 -0.8849 17 6 2.7560 -3.9172 1.2456 18 7 2.3979 -3.5673 2.4531 19 7 3.4529 -3.9242 3.3087 20 1 3.4916 -3.7950 4.2693 21 6 4.3986 -4.4804 2.5318 22 6 5.7241 -5.0220 3.0018 23 7 5.6089 -6.4644 3.2302 24 6 6.6774 -7.1666 3.6566 25 8 7.7343 -6.6044 3.8506 26 6 6.5591 -8.6506 3.8910 27 6 6.6397 -9.1461 5.3364 28 6 7.8069 -9.3907 4.3767 29 7 3.9650 -4.4747 1.2975 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5272 -2.4875 1.0168 32 1 -0.5993 -1.7573 -0.6151 33 1 1.0242 -5.5918 -0.6805 34 1 0.5481 -5.1010 0.9767 35 1 6.4832 -4.8339 2.2425 36 1 6.0093 -4.5286 3.9309 37 1 4.7638 -6.9143 3.0740 38 1 5.8906 -9.1818 3.2134 39 1 6.7788 -8.3988 6.1175 40 1 6.0246 -10.0035 5.6095 41 1 7.9592 -10.4091 4.0189 42 1 8.7136 -8.8045 4.5262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070724968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:47 Heat of formation + Delta-G solvation = 58.050125 kcal Electronic energy + Delta-G solvation = -26928.570219 eV Core-core repulsion = 22861.692313 eV Total energy + Delta-G solvation = -4066.877905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.75233 -41.87230 -40.18058 -37.17412 -36.64241 -35.16244 -32.78961 -32.09783 -31.28855 -29.26940 -28.14815 -27.23318 -24.69027 -24.13856 -22.82061 -22.28408 -20.86933 -20.40811 -20.37696 -19.29337 -18.15072 -17.50643 -16.98299 -16.47387 -15.80777 -15.66693 -15.24298 -15.15537 -14.99616 -14.36761 -14.14214 -14.03226 -13.67896 -13.56579 -13.28143 -13.01934 -12.90039 -12.36763 -11.95420 -11.70422 -11.62956 -11.55515 -11.05648 -11.03038 -10.93067 -10.88995 -10.72503 -10.39872 -10.27940 -10.11534 -9.95831 -9.72292 -9.66799 -9.52177 -9.46757 -9.16756 -8.73753 -7.01498 -5.73489 -3.15855 1.68987 2.16323 2.70129 2.95498 3.33772 3.38768 3.42626 3.44261 3.47181 3.98122 4.29851 4.39862 4.42764 4.48234 4.73713 4.77730 4.88390 5.09862 5.19227 5.22041 5.30587 5.38661 5.43113 5.47680 5.53319 5.53777 5.64830 5.73067 5.77416 5.96478 6.15274 6.19352 6.34899 6.59513 6.79935 6.82971 7.10417 7.24735 7.33150 7.51810 7.73234 7.86509 8.23693 8.47049 9.11374 9.71694 10.31286 11.31064 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002941 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.472612 B = 9516.917480 C =10716.731848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.003 4.003 3 Si 0.917 3.083 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.220 4.220 8 H 0.075 0.925 9 N -0.574 5.574 10 C 0.131 3.869 11 C 0.058 3.942 12 H 0.085 0.915 13 F -0.210 7.210 14 C -0.140 4.140 15 C 0.243 3.757 16 H 0.072 0.928 17 C 0.231 3.769 18 N -0.269 5.269 19 N -0.483 5.483 20 H 0.434 0.566 21 C 0.238 3.762 22 C 0.208 3.792 23 N -0.719 5.719 24 C 0.547 3.453 25 O -0.539 6.539 26 C -0.195 4.195 27 C -0.153 4.153 28 C -0.147 4.147 29 N -0.519 5.519 30 H 0.255 0.745 31 H 0.034 0.966 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.407 0.593 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -18.078 9.343 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.199 4.199 3 Si 0.747 3.253 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.348 4.348 8 H 0.093 0.907 9 N -0.296 5.296 10 C 0.006 3.994 11 C 0.020 3.980 12 H 0.102 0.898 13 F -0.191 7.191 14 C -0.180 4.180 15 C 0.130 3.870 16 H 0.090 0.910 17 C -0.055 4.055 18 N -0.097 5.097 19 N -0.202 5.202 20 H 0.279 0.721 21 C -0.041 4.041 22 C 0.082 3.918 23 N -0.372 5.372 24 C 0.333 3.667 25 O -0.415 6.415 26 C -0.216 4.216 27 C -0.191 4.191 28 C -0.184 4.184 29 N -0.249 5.249 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.241 0.759 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.466 -17.131 9.244 20.849 hybrid contribution 0.254 0.791 0.751 1.120 sum 7.720 -16.340 9.995 20.651 Atomic orbital electron populations 1.69716 1.04891 1.25205 1.56872 1.24755 0.95718 0.97743 1.01702 0.86120 0.78441 0.82800 0.77934 1.20907 1.21421 1.21369 1.18922 0.90337 0.81954 1.43611 0.90674 1.44475 1.01379 0.98941 1.84848 1.22613 0.85139 0.92214 0.99445 1.23120 0.97859 1.01076 0.75927 0.89764 1.92762 1.97668 1.97610 1.31053 1.23177 0.95443 0.97578 1.01786 1.19463 0.91288 0.87444 0.88761 0.91011 1.25991 0.90799 0.93166 0.95525 1.78287 1.07589 1.21904 1.01883 1.48265 1.13629 1.47195 1.11148 0.72146 1.23909 0.93921 0.98229 0.88061 1.19517 0.89907 0.80321 1.02086 1.45854 1.14353 1.08229 1.68812 1.19656 0.83097 0.87900 0.76002 1.90720 1.27947 1.71400 1.51475 1.22181 1.05786 0.92718 1.00909 1.22969 1.02120 1.03137 0.90842 1.22980 0.92868 1.00982 1.01564 1.70380 1.12554 1.23582 1.18337 0.93429 0.94805 0.86020 0.90275 0.90221 0.87721 0.89289 0.75878 0.85593 0.88210 0.87686 0.87799 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.92 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.13 9.95 -15.06 -0.15 -6.28 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.57 -14.46 3.10 -163.88 -0.51 -14.97 16 10 C 0.13 3.11 5.69 -2.53 -0.01 3.10 16 11 C 0.06 1.10 4.88 -24.43 -0.12 0.98 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 F -0.21 -4.38 17.24 2.25 0.04 -4.35 16 14 C -0.14 -2.46 6.29 -24.74 -0.16 -2.62 16 15 C 0.24 5.15 3.67 -68.10 -0.25 4.90 16 16 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 17 C 0.23 4.65 6.56 -156.86 -1.03 3.62 16 18 N -0.27 -5.34 12.77 32.42 0.41 -4.92 16 19 N -0.48 -7.06 7.45 32.62 0.24 -6.82 16 20 H 0.43 4.69 8.96 -182.33 -1.63 3.06 16 21 C 0.24 3.40 7.61 -155.69 -1.18 2.21 16 22 C 0.21 2.26 6.30 -5.20 -0.03 2.23 16 23 N -0.72 -6.73 5.55 -61.47 -0.34 -7.07 16 24 C 0.55 5.61 7.61 -10.98 -0.08 5.53 16 25 O -0.54 -7.45 16.26 5.56 0.09 -7.36 16 26 C -0.19 -1.41 6.19 -91.77 -0.57 -1.97 16 27 C -0.15 -0.91 10.24 -26.69 -0.27 -1.18 16 28 C -0.15 -0.98 10.05 -26.69 -0.27 -1.25 16 29 N -0.52 -9.32 11.19 -8.16 -0.09 -9.42 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.12 3.28 5.87 -51.93 -0.30 2.98 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.31 7.84 -51.93 -0.41 0.90 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.41 3.27 8.46 -40.82 -0.35 2.92 16 38 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -34.35 361.39 -10.26 -44.61 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.86 Total: 4.24 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -4.22 Total: 9.08 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: 0.28 Total: -69.05 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.35 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.35 -10.26 -44.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070724968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.656 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds