Wall clock time and date at job start Tue Mar 31 2020 14:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99876 * 2 1 4 4 H 1.48500 * 109.47068 * 239.99967 * 3 2 1 5 5 H 1.48496 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46982 * 119.99816 * 3 2 1 7 7 C 1.38813 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00062 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99579 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65165 * 359.97016 * 9 7 2 11 11 C 1.54905 * 104.92834 * 155.84166 * 10 9 7 12 12 H 1.09002 * 111.00852 * 155.13877 * 11 10 9 13 13 F 1.39902 * 111.00828 * 278.99333 * 11 10 9 14 14 C 1.55448 * 101.45165 * 37.00468 * 11 10 9 15 15 C 1.47026 * 125.64258 * 180.02562 * 9 7 2 16 16 H 1.08998 * 109.88266 * 300.44821 * 15 9 7 17 17 C 1.50700 * 109.88513 * 61.61891 * 15 9 7 18 18 N 1.30710 * 125.52633 * 43.56610 * 17 15 9 19 19 N 1.40442 * 106.79496 * 179.97438 * 18 17 15 20 20 H 0.97003 * 126.82892 * 179.97438 * 19 18 17 21 21 C 1.34437 * 106.35082 * 359.97438 * 19 18 17 22 22 C 1.50702 * 125.95951 * 180.02562 * 21 19 18 23 23 N 1.46492 * 109.46968 * 94.97926 * 22 21 19 24 24 C 1.34785 * 119.99705 * 179.97438 * 23 22 21 25 25 O 1.21276 * 120.00038 * 359.97438 * 24 23 22 26 26 C 1.50699 * 119.99691 * 180.02562 * 24 23 22 27 27 C 1.53005 * 117.50058 * 248.74672 * 26 24 23 28 28 C 1.53001 * 117.49648 * 180.08678 * 26 24 23 29 29 N 1.30827 * 108.07478 * 359.75948 * 21 19 18 30 30 H 0.96996 * 120.00198 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36926 * 274.73635 * 10 9 7 32 32 H 1.08995 * 110.36556 * 36.94919 * 10 9 7 33 33 H 1.08998 * 110.70855 * 206.14575 * 14 11 10 34 34 H 1.08998 * 110.85957 * 82.96191 * 14 11 10 35 35 H 1.09003 * 109.46827 * 214.97832 * 22 21 19 36 36 H 1.09001 * 109.46941 * 334.97531 * 22 21 19 37 37 H 0.96999 * 120.00332 * 0.02562 * 23 22 21 38 38 H 1.09006 * 115.55254 * 34.41840 * 26 24 23 39 39 H 1.09000 * 117.49332 * 359.97438 * 27 26 24 40 40 H 1.08992 * 117.49859 * 145.02103 * 27 26 24 41 41 H 1.09004 * 117.49856 * 214.97726 * 28 26 24 42 42 H 1.08995 * 117.49897 * 359.97426 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1414 -2.5332 -0.0016 11 6 -0.4042 -3.9309 -0.6155 12 1 -1.3623 -4.3301 -0.2827 13 9 -0.3402 -3.8853 -2.0123 14 6 0.7785 -4.7524 -0.0300 15 6 1.9319 -3.7275 -0.0017 16 1 2.5587 -3.8506 -0.8849 17 6 2.7560 -3.9172 1.2456 18 7 2.3979 -3.5673 2.4531 19 7 3.4529 -3.9242 3.3087 20 1 3.4916 -3.7950 4.2693 21 6 4.3986 -4.4804 2.5318 22 6 5.7241 -5.0220 3.0018 23 7 5.6089 -6.4644 3.2302 24 6 6.6774 -7.1666 3.6566 25 8 7.7343 -6.6044 3.8506 26 6 6.5591 -8.6506 3.8910 27 6 6.6397 -9.1461 5.3364 28 6 7.8069 -9.3907 4.3767 29 7 3.9650 -4.4747 1.2975 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5272 -2.4875 1.0168 32 1 -0.5993 -1.7573 -0.6151 33 1 1.0242 -5.5918 -0.6805 34 1 0.5481 -5.1010 0.9767 35 1 6.4832 -4.8339 2.2425 36 1 6.0093 -4.5286 3.9309 37 1 4.7638 -6.9143 3.0740 38 1 5.8906 -9.1818 3.2134 39 1 6.7788 -8.3988 6.1175 40 1 6.0246 -10.0035 5.6095 41 1 7.9592 -10.4091 4.0189 42 1 8.7136 -8.8045 4.5262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070724968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:46 Heat of formation + Delta-G solvation = 34.027075 kcal Electronic energy + Delta-G solvation = -26929.611936 eV Core-core repulsion = 22861.692313 eV Total energy + Delta-G solvation = -4067.919623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.36621 -43.21801 -40.98189 -38.85447 -37.27341 -36.10020 -34.64124 -33.56959 -32.55803 -31.12403 -29.62465 -28.43851 -26.62942 -24.89314 -23.81321 -23.28132 -22.12099 -22.02653 -21.23099 -20.89036 -19.21921 -18.87337 -18.43555 -17.48687 -17.35211 -17.06162 -16.42239 -16.24624 -16.01183 -15.94973 -15.58135 -15.31044 -15.16531 -14.98530 -14.59541 -14.18152 -14.08081 -13.53966 -13.44556 -13.40074 -12.92864 -12.89913 -12.68839 -12.47158 -12.41512 -12.11396 -11.96971 -11.75967 -11.54247 -11.45639 -11.30160 -11.19638 -11.08260 -11.02244 -10.84022 -10.51767 -10.31646 -9.01285 -7.83254 -5.27324 0.46214 1.40669 1.40843 1.43266 1.49737 1.57115 1.71905 2.24604 2.43870 2.79416 2.93102 3.28752 3.41154 3.53911 3.65950 3.72251 3.75229 3.87775 3.93116 3.99202 4.00586 4.18476 4.24243 4.40084 4.46940 4.58910 4.68857 4.77579 4.87984 4.94113 5.03639 5.14631 5.16451 5.26030 5.32637 5.33885 5.39068 5.51487 5.70925 6.13090 6.24029 6.36455 7.03556 7.08642 7.09846 7.68374 8.29224 9.18666 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002941 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.472612 B = 9516.917480 C =10716.731848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.055 4.055 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.133 3.867 11 C 0.067 3.933 12 H 0.127 0.873 13 F -0.221 7.221 14 C -0.124 4.124 15 C 0.235 3.765 16 H 0.058 0.942 17 C 0.220 3.780 18 N -0.305 5.305 19 N -0.467 5.467 20 H 0.452 0.548 21 C 0.263 3.737 22 C 0.214 3.786 23 N -0.710 5.710 24 C 0.545 3.455 25 O -0.579 6.579 26 C -0.201 4.201 27 C -0.140 4.140 28 C -0.153 4.153 29 N -0.544 5.544 30 H 0.250 0.750 31 H 0.017 0.983 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.416 0.584 38 H 0.149 0.851 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 -20.369 10.422 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.248 4.248 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.082 0.918 9 N -0.317 5.317 10 C 0.007 3.993 11 C 0.030 3.970 12 H 0.144 0.856 13 F -0.202 7.202 14 C -0.163 4.163 15 C 0.124 3.876 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.133 5.133 19 N -0.188 5.188 20 H 0.300 0.700 21 C -0.017 4.017 22 C 0.087 3.913 23 N -0.363 5.363 24 C 0.334 3.666 25 O -0.459 6.459 26 C -0.222 4.222 27 C -0.178 4.178 28 C -0.190 4.190 29 N -0.274 5.274 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.252 0.748 38 H 0.167 0.833 39 H 0.109 0.891 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.902 -19.468 10.347 23.420 hybrid contribution 0.225 1.449 0.479 1.543 sum 8.126 -18.019 10.826 22.537 Atomic orbital electron populations 1.69948 1.05821 1.25275 1.57954 1.25472 0.96593 1.00469 1.02297 0.85234 0.77307 0.79404 0.77845 1.20425 1.21295 1.21229 1.19038 0.90100 0.83526 1.42955 0.91798 1.44592 1.02104 0.99726 1.85232 1.22369 0.84411 0.94312 0.98159 1.23128 1.00586 0.98331 0.75000 0.85590 1.92743 1.97862 1.97512 1.32043 1.23142 0.92938 0.97010 1.03172 1.19526 0.92566 0.86686 0.88846 0.92438 1.25473 0.91562 0.94233 0.95192 1.78174 1.09846 1.22918 1.02386 1.48083 1.12529 1.46378 1.11802 0.69998 1.24335 0.94191 0.96220 0.86928 1.19548 0.87503 0.81501 1.02719 1.45745 1.14757 1.07431 1.68351 1.20210 0.82342 0.89126 0.74965 1.90707 1.29446 1.72444 1.53314 1.22254 1.06820 0.90557 1.02524 1.23069 1.01568 1.03411 0.89713 1.23045 0.92117 1.01633 1.02202 1.70334 1.12049 1.24772 1.20258 0.94018 0.96479 0.89623 0.87402 0.88687 0.88420 0.87243 0.74800 0.83290 0.89072 0.85187 0.85671 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.69 10.09 21.65 0.22 -55.47 16 2 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.23 -12.97 9.95 84.03 0.84 -12.13 16 8 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.59 -30.43 3.10 -672.40 -2.09 -32.52 16 10 C 0.13 6.41 5.69 86.85 0.49 6.91 16 11 C 0.07 2.44 4.88 32.09 0.16 2.60 16 12 H 0.13 3.62 8.14 -2.39 -0.02 3.60 16 13 F -0.22 -8.99 17.24 44.97 0.78 -8.21 16 14 C -0.12 -4.09 6.29 31.89 0.20 -3.88 16 15 C 0.23 9.92 3.67 44.59 0.16 10.09 16 16 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 17 C 0.22 8.77 6.56 138.63 0.91 9.68 16 18 N -0.30 -11.84 12.77 -51.34 -0.66 -12.50 16 19 N -0.47 -12.88 7.45 -50.70 -0.38 -13.26 16 20 H 0.45 8.80 8.96 -213.10 -1.91 6.89 16 21 C 0.26 7.05 7.61 138.23 1.05 8.11 16 22 C 0.21 4.25 6.30 85.64 0.54 4.79 16 23 N -0.71 -11.75 5.55 -466.79 -2.59 -14.34 16 24 C 0.55 10.28 7.61 87.66 0.67 10.94 16 25 O -0.58 -15.60 16.26 -3.02 -0.05 -15.65 16 26 C -0.20 -2.40 6.19 -11.54 -0.07 -2.47 16 27 C -0.14 -1.28 10.24 30.62 0.31 -0.97 16 28 C -0.15 -1.74 10.05 30.62 0.31 -1.44 16 29 N -0.54 -19.00 11.19 -179.73 -2.01 -21.01 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 4.78 5.87 -2.39 -0.01 4.77 16 33 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.09 2.88 7.84 -2.39 -0.02 2.86 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.42 5.56 8.46 -92.71 -0.78 4.78 16 38 H 0.15 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.40 7.67 -2.39 -0.02 1.38 16 Total: -1.00 -77.05 361.39 -0.33 -77.38 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -1.61 Total: 17.15 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 6.03 Total: 29.53 kcal Atomic # 7 Polarization: -141.60 SS G_CDS: -7.50 Total: -149.10 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.05 Total: -15.65 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 0.78 Total: -8.21 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.05 -0.33 -77.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070724968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.403 kcal (2) G-P(sol) polarization free energy of solvation -77.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds