Wall clock time and date at job start Tue Mar 31 2020 14:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35455 * 126.77871 * 2 1 4 4 C 1.41381 * 103.98728 * 180.09974 * 3 2 1 5 5 C 1.50693 * 126.80349 * 179.88995 * 4 3 2 6 6 O 1.42906 * 109.46811 * 359.71080 * 5 4 3 7 7 C 1.42899 * 114.00097 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47490 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 N 1.30180 * 106.39260 * 359.62708 * 4 3 2 26 26 O 1.20915 * 111.60857 * 0.24332 * 25 4 3 27 27 H 1.09004 * 109.47261 * 180.29840 * 1 2 3 28 28 H 1.08997 * 109.47124 * 300.29627 * 1 2 3 29 29 H 1.08999 * 109.47329 * 60.30059 * 1 2 3 30 30 H 1.07993 * 128.00054 * 359.96589 * 3 2 1 31 31 H 1.08994 * 109.47558 * 239.71354 * 5 4 3 32 32 H 1.09000 * 109.47637 * 119.70576 * 5 4 3 33 33 H 1.09005 * 109.47557 * 59.99302 * 7 6 5 34 34 H 1.09006 * 109.46925 * 300.00023 * 7 6 5 35 35 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 37 37 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 38 38 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 39 39 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 40 40 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 41 41 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 42 42 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 43 43 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9210 1.2999 -0.0057 6 8 4.6499 2.7030 -0.0130 7 6 5.8213 3.5214 -0.0172 8 6 5.4195 4.9738 -0.0254 9 8 4.2455 5.2781 -0.0268 10 7 6.3648 5.9344 -0.0299 11 6 5.9742 7.3464 -0.0373 12 6 7.2284 8.2226 -0.0419 13 6 6.9296 9.7254 -0.1726 14 6 8.0479 9.9572 0.8573 15 7 7.7368 11.0016 1.8363 16 6 8.7501 11.6534 2.4874 17 1 9.7784 11.3977 2.2788 18 6 8.4553 12.6435 3.4146 19 7 7.2020 12.9555 3.6684 20 14 9.8374 13.5331 4.3023 21 1 11.1449 13.0002 3.8421 22 1 9.7621 14.9861 4.0050 23 1 9.7039 13.3197 5.7658 24 6 7.7698 8.5329 1.3665 25 7 3.4763 -0.7564 0.0046 26 8 2.3095 -1.0737 0.0060 27 1 -0.3634 -1.0277 0.0054 28 1 -0.3633 0.5184 0.8873 29 1 -0.3634 0.5091 -0.8926 30 1 2.0344 2.1270 -0.0005 31 1 5.4948 1.0362 -0.8941 32 1 5.4941 1.0453 0.8858 33 1 6.4136 3.3036 -0.9061 34 1 6.4135 3.3128 0.8739 35 1 7.3037 5.6911 -0.0284 36 1 5.3818 7.5641 0.8514 37 1 5.3822 7.5550 -0.9285 38 1 7.9904 7.8671 -0.7355 39 1 5.9398 10.0066 0.1870 40 1 7.1537 10.1311 -1.1591 41 1 9.0350 10.0762 0.4106 42 1 6.8133 11.2315 2.0234 43 1 6.9961 13.6471 4.3166 44 1 8.6716 7.9766 1.6216 45 1 7.0093 8.4888 2.1461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100437163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:19 Heat of formation + Delta-G solvation = 11.399600 kcal Electronic energy + Delta-G solvation = -25534.570266 eV Core-core repulsion = 21556.836996 eV Total energy + Delta-G solvation = -3977.733270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.26971 -40.02495 -38.70077 -37.92888 -34.76251 -34.57704 -33.70076 -33.32364 -30.51412 -29.52256 -28.15417 -27.65868 -26.13059 -25.12478 -23.82576 -23.24633 -21.14518 -21.03761 -20.48533 -19.09385 -18.06581 -17.83756 -17.27516 -17.03165 -16.97701 -16.74257 -15.72290 -15.31172 -15.18523 -14.78130 -14.66929 -14.21034 -13.98710 -13.73141 -13.66350 -13.58552 -13.34640 -13.01968 -12.77257 -12.72669 -12.25108 -11.94241 -11.84767 -11.53962 -11.41399 -11.26730 -10.87420 -10.75151 -10.55613 -10.29454 -10.13649 -10.05400 -9.88266 -9.85298 -9.63306 -9.52019 -9.11063 -8.89693 -6.98639 -5.80604 -3.09637 1.10315 1.86639 2.36523 2.45839 2.76545 3.35962 3.40739 3.46211 3.48672 4.00840 4.26450 4.46408 4.56124 4.64103 4.68013 4.71346 4.79136 4.86704 4.92609 4.94965 4.97843 4.97910 5.03131 5.18932 5.32910 5.43977 5.45727 5.46386 5.77238 5.77824 5.80279 5.89180 6.06322 6.19191 6.26822 6.32030 6.37665 6.48849 6.55915 6.78784 7.08158 7.35311 7.67301 7.88174 8.07638 8.37912 9.49068 10.07294 10.41313 11.41791 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.001562 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.718940 B =17920.797825 C =18101.926811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.038 4.038 3 C -0.206 4.206 4 C 0.017 3.983 5 C 0.144 3.856 6 O -0.356 6.356 7 C 0.046 3.954 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.723 5.723 11 C 0.134 3.866 12 C -0.127 4.127 13 C -0.142 4.142 14 C 0.165 3.835 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.161 4.161 25 N -0.362 5.362 26 O 0.100 5.900 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.178 0.822 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.401 0.599 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.054 0.946 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 -26.968 -10.848 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.227 4.227 4 C -0.141 4.141 5 C 0.066 3.934 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.295 3.705 9 O -0.396 6.396 10 N -0.376 5.376 11 C 0.011 3.989 12 C -0.147 4.147 13 C -0.181 4.181 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.202 4.202 25 N -0.068 5.068 26 O 0.033 5.967 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.196 0.804 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.462 -27.560 -10.753 30.510 hybrid contribution 0.877 1.125 0.634 1.561 sum -6.585 -26.435 -10.119 29.061 Atomic orbital electron populations 1.20351 0.83766 1.04604 1.04398 1.24572 0.96505 0.85896 1.03154 1.22450 0.90641 1.01560 1.08046 1.23095 0.97120 0.90137 1.03726 1.20315 0.90513 0.80432 1.02125 1.87955 1.29125 1.14660 1.95586 1.22244 0.88570 0.89569 1.03051 1.20101 0.86348 0.86838 0.77173 1.90745 1.17812 1.83223 1.47830 1.45919 1.09433 1.06692 1.75566 1.21467 0.97177 0.77971 1.02301 1.22694 0.96407 0.95615 0.99937 1.23427 1.01358 0.92965 1.00381 1.21523 0.95781 0.87667 0.89727 1.42421 1.06725 1.40763 1.45216 1.19347 0.88372 1.13466 1.16382 0.91036 1.24776 0.96249 0.99697 1.00203 1.69671 1.16231 1.34416 1.37637 0.86121 0.81169 0.79481 0.79419 1.20535 1.21831 1.21859 1.24002 1.00369 1.01264 0.94568 1.73773 0.97450 1.15253 1.20295 1.84808 1.11023 1.33222 1.67667 0.89908 0.88986 0.89022 0.80428 0.90623 0.90565 0.89883 0.89750 0.76521 0.91061 0.91624 0.89322 0.90054 0.91944 0.90743 0.78059 0.93481 0.92754 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.45 36.00 0.38 0.09 16 2 C -0.04 -0.31 7.49 -35.30 -0.26 -0.57 16 3 C -0.21 -2.00 10.45 -39.38 -0.41 -2.41 16 4 C 0.02 0.18 7.28 -82.10 -0.60 -0.42 16 5 C 0.14 1.20 6.56 36.00 0.24 1.43 16 6 O -0.36 -3.73 9.37 -55.14 -0.52 -4.25 16 7 C 0.05 0.36 6.42 36.00 0.23 0.59 16 8 C 0.51 6.02 7.91 -10.99 -0.09 5.93 16 9 O -0.52 -8.67 16.50 -14.36 -0.24 -8.91 16 10 N -0.72 -7.29 5.56 -60.29 -0.33 -7.62 16 11 C 0.13 1.65 5.51 -4.04 -0.02 1.63 16 12 C -0.13 -1.59 3.76 -89.67 -0.34 -1.92 16 13 C -0.14 -2.17 7.39 -25.92 -0.19 -2.36 16 14 C 0.17 3.10 4.47 -67.12 -0.30 2.80 16 15 N -0.71 -17.54 5.41 -52.64 -0.28 -17.82 16 16 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 20 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.16 -2.54 7.45 -25.77 -0.19 -2.73 16 25 N -0.36 -4.02 12.07 33.42 0.40 -3.61 16 26 O 0.10 0.99 11.20 17.16 0.19 1.19 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.18 1.72 8.05 -52.49 -0.42 1.29 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 2.81 8.47 -40.82 -0.35 2.47 16 36 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 42 H 0.39 10.12 7.91 -40.82 -0.32 9.80 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -35.26 386.70 -8.00 -43.26 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.95 Total: 7.34 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.81 Total: -5.25 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.51 Total: -56.32 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.56 Total: -11.97 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.26 -8.00 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100437163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.659 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds