Wall clock time and date at job start Tue Mar 31 2020 14:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35272 * 126.70991 * 2 1 4 4 C 1.41930 * 103.95860 * 179.97438 * 3 2 1 5 5 O 1.35715 * 126.87818 * 179.97438 * 4 3 2 6 6 C 1.42899 * 116.99587 * 180.02562 * 5 4 3 7 7 C 1.50710 * 109.46535 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99871 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99620 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99791 * 180.27092 * 9 7 6 11 11 C 1.52997 * 109.47099 * 179.72370 * 10 9 7 12 12 H 1.09001 * 110.88632 * 51.12809 * 11 10 9 13 13 C 1.54909 * 111.00791 * 287.19783 * 11 10 9 14 14 N 1.47419 * 104.83335 * 204.91435 * 13 11 10 15 15 C 1.36933 * 125.65097 * 204.08197 * 14 13 11 16 16 H 1.07999 * 119.99966 * 354.84449 * 15 14 13 17 17 C 1.38815 * 120.00478 * 174.84612 * 15 14 13 18 18 N 1.31620 * 119.99411 * 7.04957 * 17 15 14 19 19 Si 1.86798 * 120.00098 * 187.05751 * 17 15 14 20 20 H 1.48499 * 109.47431 * 94.98544 * 19 17 15 21 21 H 1.48504 * 109.46905 * 214.98401 * 19 17 15 22 22 H 1.48493 * 109.47300 * 334.98292 * 19 17 15 23 23 C 1.47022 * 108.70213 * 24.13144 * 14 13 11 24 24 C 1.54319 * 107.27276 * 358.94135 * 23 14 13 25 25 H 1.08989 * 110.72408 * 96.17225 * 24 23 14 26 26 C 1.53002 * 110.87004 * 219.37373 * 24 23 14 27 27 N 1.30619 * 106.24552 * 0.24344 * 4 3 2 28 28 O 1.20915 * 111.49246 * 359.57032 * 27 4 3 29 29 H 1.08999 * 109.47299 * 90.00093 * 1 2 3 30 30 H 1.08998 * 109.47612 * 209.99778 * 1 2 3 31 31 H 1.08999 * 109.47313 * 330.00109 * 1 2 3 32 32 H 1.07997 * 128.01973 * 359.95956 * 3 2 1 33 33 H 1.08997 * 109.47491 * 60.00191 * 6 5 4 34 34 H 1.09000 * 109.47375 * 299.99501 * 6 5 4 35 35 H 0.96996 * 120.00506 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.47323 * 299.73223 * 10 9 7 37 37 H 1.09005 * 109.46511 * 59.72838 * 10 9 7 38 38 H 1.08996 * 110.36634 * 323.76185 * 13 11 10 39 39 H 1.09002 * 110.36061 * 86.07850 * 13 11 10 40 40 H 0.97001 * 119.99382 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.88379 * 239.51989 * 23 14 13 42 42 H 1.09003 * 109.88161 * 118.35398 * 23 14 13 43 43 H 1.09002 * 109.47034 * 173.60405 * 26 24 23 44 44 H 1.08994 * 109.47251 * 293.60479 * 26 24 23 45 45 H 1.08995 * 109.47330 * 53.60650 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6244 0.5355 0.0006 5 8 4.7954 1.2217 0.0004 6 6 5.9988 0.4511 0.0005 7 6 7.1880 1.3769 0.0009 8 8 7.0212 2.5781 0.0005 9 7 8.4367 0.8698 0.0016 10 6 9.5927 1.7697 0.0079 11 6 10.8812 0.9447 0.0144 12 1 10.8680 0.1972 -0.7788 13 6 11.1111 0.2848 1.3968 14 7 12.5677 0.0718 1.4758 15 6 13.1966 -0.8627 2.2544 16 1 12.6235 -1.4661 2.9428 17 6 14.5708 -1.0346 2.1589 18 7 15.2878 -0.2094 1.4260 19 14 15.4022 -2.4372 3.0705 20 1 15.5499 -3.6009 2.1599 21 1 16.7428 -1.9994 3.5357 22 1 14.5750 -2.8263 4.2407 23 6 13.2334 1.0299 0.5811 24 6 12.1283 1.8602 -0.1050 25 1 11.9685 2.8003 0.4227 26 6 12.4722 2.1176 -1.5735 27 7 3.4765 -0.7622 -0.0044 28 8 2.3085 -1.0749 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 2.0311 2.1263 -0.0006 33 1 6.0277 -0.1778 -0.8892 34 1 6.0278 -0.1772 0.8907 35 1 8.5700 -0.0910 0.0015 36 1 9.5684 2.3987 -0.8819 37 1 9.5591 2.3980 0.8980 38 1 10.7811 0.9503 2.1945 39 1 10.5848 -0.6680 1.4545 40 1 16.2480 -0.3297 1.3590 41 1 13.8145 0.4941 -0.1694 42 1 13.8849 1.6856 1.1588 43 1 11.6295 2.6048 -2.0640 44 1 13.3495 2.7615 -1.6336 45 1 12.6825 1.1698 -2.0689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102066794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:51 Heat of formation + Delta-G solvation = 13.693518 kcal Electronic energy + Delta-G solvation = -26514.082409 eV Core-core repulsion = 22536.448611 eV Total energy + Delta-G solvation = -3977.633798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.22821 -40.17699 -38.79666 -37.89648 -34.76933 -34.22156 -33.01495 -32.85689 -30.76915 -30.17067 -28.53707 -27.94862 -25.94861 -25.00366 -23.75415 -22.90959 -21.74885 -20.74182 -20.04265 -19.28491 -18.29419 -18.19008 -17.32561 -17.09598 -16.69485 -16.47507 -15.86479 -15.20861 -14.76285 -14.52993 -14.29023 -14.14606 -13.84869 -13.77924 -13.72590 -13.25641 -13.20407 -12.95293 -12.88146 -12.55928 -12.10277 -11.81252 -11.70468 -11.45890 -11.40417 -11.26061 -10.82770 -10.81567 -10.25915 -10.08115 -10.01773 -9.95674 -9.89197 -9.72302 -9.59922 -9.53548 -9.09278 -8.60074 -6.85258 -5.74703 -3.07117 1.05016 1.93329 2.05101 2.42270 2.73004 3.30917 3.38319 3.43685 3.45704 3.84077 4.39469 4.45120 4.48426 4.56653 4.73476 4.76444 4.82550 4.89265 5.04204 5.14782 5.15972 5.27210 5.29170 5.50314 5.51980 5.52450 5.71499 5.81908 5.98725 6.04500 6.15178 6.23946 6.31587 6.45499 6.53744 6.58797 6.63156 6.72591 6.90465 7.35552 7.54269 7.62578 7.81450 7.89413 8.04561 8.23638 9.19528 9.80042 10.46451 11.37265 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002076 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.117317 B =13486.976092 C =14629.154568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.256 6.256 6 C 0.044 3.956 7 C 0.515 3.485 8 O -0.522 6.522 9 N -0.718 5.718 10 C 0.134 3.866 11 C -0.113 4.113 12 H 0.082 0.918 13 C 0.141 3.859 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.183 3.817 24 C -0.110 4.110 25 H 0.068 0.932 26 C -0.134 4.134 27 N -0.410 5.410 28 O 0.098 5.902 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.179 0.821 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.019 0.981 39 H 0.036 0.964 40 H 0.252 0.748 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.796 1.502 -6.127 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.161 6.161 6 C -0.034 4.034 7 C 0.299 3.701 8 O -0.398 6.398 9 N -0.371 5.371 10 C 0.011 3.989 11 C -0.133 4.133 12 H 0.100 0.900 13 C 0.015 3.985 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.058 3.942 24 C -0.130 4.130 25 H 0.086 0.914 26 C -0.192 4.192 27 N -0.138 5.138 28 O 0.038 5.962 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.196 0.804 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.752 1.603 -6.079 26.509 hybrid contribution 0.512 -0.593 0.513 0.937 sum -25.240 1.010 -5.567 25.866 Atomic orbital electron populations 1.20387 0.83458 1.04985 1.04424 1.24362 0.96511 0.85577 1.00836 1.21808 0.88273 1.01742 1.13636 1.22065 0.88455 0.88051 0.99894 1.86283 1.09989 1.30748 1.89059 1.22515 0.82312 0.93688 1.04922 1.19851 0.83871 0.88925 0.77430 1.90754 1.85634 1.15129 1.48259 1.45900 1.05021 1.11199 1.74945 1.21469 0.82941 0.92147 1.02321 1.22691 0.92590 0.98043 0.99988 0.90010 1.21596 0.87398 0.96814 0.92725 1.44461 0.99253 1.39358 1.50150 1.19049 0.90501 1.10941 1.15358 0.90476 1.24827 0.96259 0.99132 1.00150 1.69978 1.05533 1.37212 1.43885 0.86122 0.78941 0.81938 0.78926 1.21623 1.21759 1.20654 1.21233 0.90479 0.90009 0.92470 1.22438 0.95831 0.98331 0.96400 0.91386 1.21694 1.00481 1.01406 0.95625 1.74180 0.97934 1.14185 1.27529 1.84795 1.10293 1.31989 1.69094 0.89054 0.89479 0.88738 0.80364 0.88519 0.88404 0.76115 0.91341 0.91098 0.96356 0.94543 0.93740 0.93114 0.94191 0.93647 0.92713 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.45 36.00 0.38 0.20 16 2 C -0.01 -0.06 7.48 -35.37 -0.26 -0.33 16 3 C -0.23 -2.03 11.11 -39.23 -0.44 -2.46 16 4 C 0.21 2.51 8.01 -16.66 -0.13 2.38 16 5 O -0.26 -3.41 9.74 -38.76 -0.38 -3.79 16 6 C 0.04 0.50 6.14 36.01 0.22 0.72 16 7 C 0.52 7.04 7.91 -10.98 -0.09 6.95 16 8 O -0.52 -9.29 16.50 -14.35 -0.24 -9.52 16 9 N -0.72 -8.85 5.50 -60.29 -0.33 -9.18 16 10 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 11 C -0.11 -1.83 2.49 -88.47 -0.22 -2.05 16 12 H 0.08 1.29 8.05 -51.93 -0.42 0.88 16 13 C 0.14 2.78 6.65 -2.53 -0.02 2.76 16 14 N -0.61 -15.18 3.39 -170.08 -0.58 -15.76 16 15 C -0.23 -6.36 10.27 -15.06 -0.15 -6.52 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -26.81 10.36 55.49 0.57 -26.24 16 19 Si 0.91 22.00 29.56 -169.99 -5.02 16.97 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.18 4.33 4.98 -3.07 -0.02 4.31 16 24 C -0.11 -1.97 3.01 -88.78 -0.27 -2.23 16 25 H 0.07 1.18 8.04 -51.94 -0.42 0.76 16 26 C -0.13 -2.06 9.17 37.16 0.34 -1.72 16 27 N -0.41 -4.80 11.54 30.38 0.35 -4.45 16 28 O 0.10 0.95 11.19 17.06 0.19 1.15 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.09 8.47 -40.82 -0.35 3.74 16 36 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 38 H 0.02 0.38 7.91 -51.93 -0.41 -0.04 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.33 6.93 -51.93 -0.36 0.97 16 42 H 0.04 1.06 7.61 -51.93 -0.40 0.67 16 43 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -34.80 377.77 -7.46 -42.26 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.95 Total: -0.73 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.77 Total: 3.59 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.02 Total: -55.62 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.42 Total: -12.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.80 -7.46 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102066794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.956 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds