Wall clock time and date at job start Tue Mar 31 2020 14:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35272 * 126.70991 * 2 1 4 4 C 1.41930 * 103.95860 * 179.97438 * 3 2 1 5 5 O 1.35715 * 126.87818 * 179.97438 * 4 3 2 6 6 C 1.42899 * 116.99587 * 180.02562 * 5 4 3 7 7 C 1.50710 * 109.46535 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99871 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99620 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99791 * 180.27092 * 9 7 6 11 11 C 1.52997 * 109.47099 * 179.72370 * 10 9 7 12 12 H 1.09001 * 110.88632 * 51.12809 * 11 10 9 13 13 C 1.54909 * 111.00791 * 287.19783 * 11 10 9 14 14 N 1.47419 * 104.83335 * 204.91435 * 13 11 10 15 15 C 1.36933 * 125.65097 * 204.08197 * 14 13 11 16 16 H 1.07999 * 119.99966 * 354.84449 * 15 14 13 17 17 C 1.38815 * 120.00478 * 174.84612 * 15 14 13 18 18 N 1.31620 * 119.99411 * 7.04957 * 17 15 14 19 19 Si 1.86798 * 120.00098 * 187.05751 * 17 15 14 20 20 H 1.48499 * 109.47431 * 94.98544 * 19 17 15 21 21 H 1.48504 * 109.46905 * 214.98401 * 19 17 15 22 22 H 1.48493 * 109.47300 * 334.98292 * 19 17 15 23 23 C 1.47022 * 108.70213 * 24.13144 * 14 13 11 24 24 C 1.54319 * 107.27276 * 358.94135 * 23 14 13 25 25 H 1.08989 * 110.72408 * 96.17225 * 24 23 14 26 26 C 1.53002 * 110.87004 * 219.37373 * 24 23 14 27 27 N 1.30619 * 106.24552 * 0.24344 * 4 3 2 28 28 O 1.20915 * 111.49246 * 359.57032 * 27 4 3 29 29 H 1.08999 * 109.47299 * 90.00093 * 1 2 3 30 30 H 1.08998 * 109.47612 * 209.99778 * 1 2 3 31 31 H 1.08999 * 109.47313 * 330.00109 * 1 2 3 32 32 H 1.07997 * 128.01973 * 359.95956 * 3 2 1 33 33 H 1.08997 * 109.47491 * 60.00191 * 6 5 4 34 34 H 1.09000 * 109.47375 * 299.99501 * 6 5 4 35 35 H 0.96996 * 120.00506 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.47323 * 299.73223 * 10 9 7 37 37 H 1.09005 * 109.46511 * 59.72838 * 10 9 7 38 38 H 1.08996 * 110.36634 * 323.76185 * 13 11 10 39 39 H 1.09002 * 110.36061 * 86.07850 * 13 11 10 40 40 H 0.97001 * 119.99382 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.88379 * 239.51989 * 23 14 13 42 42 H 1.09003 * 109.88161 * 118.35398 * 23 14 13 43 43 H 1.09002 * 109.47034 * 173.60405 * 26 24 23 44 44 H 1.08994 * 109.47251 * 293.60479 * 26 24 23 45 45 H 1.08995 * 109.47330 * 53.60650 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6244 0.5355 0.0006 5 8 4.7954 1.2217 0.0004 6 6 5.9988 0.4511 0.0005 7 6 7.1880 1.3769 0.0009 8 8 7.0212 2.5781 0.0005 9 7 8.4367 0.8698 0.0016 10 6 9.5927 1.7697 0.0079 11 6 10.8812 0.9447 0.0144 12 1 10.8680 0.1972 -0.7788 13 6 11.1111 0.2848 1.3968 14 7 12.5677 0.0718 1.4758 15 6 13.1966 -0.8627 2.2544 16 1 12.6235 -1.4661 2.9428 17 6 14.5708 -1.0346 2.1589 18 7 15.2878 -0.2094 1.4260 19 14 15.4022 -2.4372 3.0705 20 1 15.5499 -3.6009 2.1599 21 1 16.7428 -1.9994 3.5357 22 1 14.5750 -2.8263 4.2407 23 6 13.2334 1.0299 0.5811 24 6 12.1283 1.8602 -0.1050 25 1 11.9685 2.8003 0.4227 26 6 12.4722 2.1176 -1.5735 27 7 3.4765 -0.7622 -0.0044 28 8 2.3085 -1.0749 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 2.0311 2.1263 -0.0006 33 1 6.0277 -0.1778 -0.8892 34 1 6.0278 -0.1772 0.8907 35 1 8.5700 -0.0910 0.0015 36 1 9.5684 2.3987 -0.8819 37 1 9.5591 2.3980 0.8980 38 1 10.7811 0.9503 2.1945 39 1 10.5848 -0.6680 1.4545 40 1 16.2480 -0.3297 1.3590 41 1 13.8145 0.4941 -0.1694 42 1 13.8849 1.6856 1.1588 43 1 11.6295 2.6048 -2.0640 44 1 13.3495 2.7615 -1.6336 45 1 12.6825 1.1698 -2.0689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102066794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:50 Heat of formation + Delta-G solvation = -11.038727 kcal Electronic energy + Delta-G solvation = -26515.154880 eV Core-core repulsion = 22536.448611 eV Total energy + Delta-G solvation = -3978.706269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.94893 -41.24366 -39.95581 -39.27109 -36.14249 -34.78930 -34.72629 -33.57477 -32.56226 -31.44945 -29.55282 -28.57431 -27.76158 -26.48068 -24.50263 -24.46563 -22.66142 -21.79331 -21.65369 -20.74460 -19.13838 -18.93825 -18.79417 -18.18963 -17.86132 -17.41073 -17.09021 -16.69438 -16.18919 -15.81108 -15.58071 -15.28136 -14.89491 -14.70642 -14.51912 -14.38955 -14.17490 -14.09670 -13.90293 -13.45499 -13.35108 -13.23081 -13.10563 -12.91676 -12.82144 -12.69305 -12.43273 -12.13002 -11.94544 -11.86623 -11.59833 -11.46859 -11.39241 -11.02667 -10.69435 -10.51579 -10.29183 -10.21207 -8.89830 -7.86865 -5.21146 0.44160 1.17716 1.19155 1.36180 1.45017 1.46410 1.55331 2.15419 2.41449 2.48322 3.11124 3.30714 3.47918 3.58942 3.77137 3.84707 3.90491 3.91877 3.95057 3.97062 3.98183 4.34516 4.38884 4.47838 4.58257 4.72276 4.77247 4.79124 4.80282 4.83142 4.91453 4.95225 5.06929 5.11877 5.26689 5.28006 5.35020 5.44033 5.47858 5.70266 5.80160 5.81222 6.19609 6.35252 7.00753 7.09641 7.21177 7.77398 8.42202 9.23809 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.002076 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.117317 B =13486.976092 C =14629.154568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 C -0.251 4.251 4 C 0.189 3.811 5 O -0.280 6.280 6 C 0.049 3.951 7 C 0.519 3.481 8 O -0.567 6.567 9 N -0.706 5.706 10 C 0.146 3.854 11 C -0.090 4.090 12 H 0.093 0.907 13 C 0.136 3.864 14 N -0.629 5.629 15 C -0.243 4.243 16 H 0.082 0.918 17 C -0.066 4.066 18 N -0.949 5.949 19 Si 0.977 3.023 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.268 1.268 23 C 0.191 3.809 24 C -0.101 4.101 25 H 0.074 0.926 26 C -0.128 4.128 27 N -0.431 5.431 28 O 0.091 5.909 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.196 0.804 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.417 0.583 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.017 0.983 39 H 0.050 0.950 40 H 0.246 0.754 41 H 0.019 0.981 42 H -0.003 1.003 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.646 0.780 -6.639 30.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C -0.272 4.272 4 C -0.008 4.008 5 O -0.185 6.185 6 C -0.029 4.029 7 C 0.305 3.695 8 O -0.445 6.445 9 N -0.360 5.360 10 C 0.022 3.978 11 C -0.110 4.110 12 H 0.111 0.889 13 C 0.011 3.989 14 N -0.355 5.355 15 C -0.372 4.372 16 H 0.100 0.900 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.805 3.195 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.193 1.193 23 C 0.066 3.934 24 C -0.121 4.121 25 H 0.093 0.907 26 C -0.185 4.185 27 N -0.160 5.160 28 O 0.031 5.969 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.213 0.787 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.254 0.746 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.015 0.985 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.643 0.843 -6.588 29.403 hybrid contribution 1.299 -0.373 0.714 1.529 sum -27.344 0.470 -5.874 27.972 Atomic orbital electron populations 1.20680 0.79916 1.06569 1.05996 1.25153 0.98071 0.84129 0.98036 1.22176 0.87305 1.03160 1.14585 1.22459 0.88747 0.88605 1.00955 1.86228 1.10869 1.31921 1.89527 1.22530 0.80952 0.92926 1.06514 1.20210 0.84545 0.88568 0.76215 1.90735 1.86258 1.17092 1.50437 1.45747 1.04312 1.11731 1.74185 1.21228 0.82324 0.91842 1.02414 1.22479 0.92819 0.97691 0.97987 0.88905 1.21790 0.84603 0.97809 0.94746 1.44792 1.01712 1.39128 1.49882 1.19449 0.91008 1.11192 1.15522 0.89996 1.25669 0.97074 1.01572 1.01644 1.70201 1.05225 1.38769 1.45558 0.85083 0.77484 0.78847 0.78072 1.21282 1.22340 1.19297 1.20994 0.91788 0.89404 0.91230 1.22315 0.94397 0.97764 0.97647 0.90733 1.21642 1.01776 1.01476 0.93618 1.74155 0.99056 1.14324 1.28454 1.84747 1.10110 1.32976 1.69071 0.87248 0.88158 0.86833 0.78676 0.86568 0.86988 0.74555 0.90289 0.92098 0.96530 0.93153 0.94437 0.96301 0.98487 0.90541 0.92750 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.11 10.45 71.23 0.74 0.63 16 2 C 0.01 0.12 7.48 25.00 0.19 0.30 16 3 C -0.25 -4.04 11.11 22.50 0.25 -3.79 16 4 C 0.19 4.34 8.01 85.79 0.69 5.03 16 5 O -0.28 -7.33 9.74 -71.32 -0.69 -8.03 16 6 C 0.05 1.04 6.14 71.24 0.44 1.48 16 7 C 0.52 13.49 7.91 87.66 0.69 14.18 16 8 O -0.57 -19.79 16.50 16.02 0.26 -19.53 16 9 N -0.71 -15.92 5.50 -463.05 -2.55 -18.47 16 10 C 0.15 3.81 5.13 86.38 0.44 4.25 16 11 C -0.09 -2.76 2.49 -9.40 -0.02 -2.78 16 12 H 0.09 2.70 8.05 -2.39 -0.02 2.68 16 13 C 0.14 5.22 6.65 86.86 0.58 5.80 16 14 N -0.63 -31.94 3.39 -692.01 -2.35 -34.29 16 15 C -0.24 -13.57 10.27 84.03 0.86 -12.70 16 16 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 17 C -0.07 -3.80 5.48 84.86 0.46 -3.33 16 18 N -0.95 -57.34 10.36 21.65 0.22 -57.12 16 19 Si 0.98 45.86 29.56 68.60 2.03 47.88 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 C 0.19 9.33 4.98 86.73 0.43 9.76 16 24 C -0.10 -3.55 3.01 -9.60 -0.03 -3.58 16 25 H 0.07 2.53 8.04 -2.39 -0.02 2.51 16 26 C -0.13 -3.72 9.17 71.98 0.66 -3.06 16 27 N -0.43 -9.73 11.54 -172.60 -1.99 -11.72 16 28 O 0.09 1.64 11.19 71.23 0.80 2.44 16 29 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.42 7.34 8.47 -92.71 -0.79 6.55 16 36 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 37 H 0.06 1.77 7.96 -2.38 -0.02 1.75 16 38 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.02 1.03 6.93 -2.39 -0.02 1.01 16 42 H 0.00 -0.18 7.61 -2.39 -0.02 -0.19 16 43 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 Total: -1.00 -78.64 377.77 2.33 -76.31 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.21 Total: 10.32 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.39 Total: 12.20 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -6.66 Total: -121.59 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: 0.37 Total: -25.12 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.64 2.33 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102066794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.268 kcal (2) G-P(sol) polarization free energy of solvation -78.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds