Wall clock time and date at job start Tue Mar 31 2020 14:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99684 * 2 1 4 4 H 1.48508 * 109.46893 * 239.99707 * 3 2 1 5 5 H 1.48493 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47065 * 120.00296 * 3 2 1 7 7 C 1.38812 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99745 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00260 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47653 * 179.97438 * 10 9 7 12 12 C 1.35349 * 126.74937 * 95.24371 * 11 10 9 13 13 N 1.35313 * 106.17486 * 180.12936 * 12 11 10 14 14 C 1.46501 * 125.86867 * 179.90409 * 13 12 11 15 15 C 1.53496 * 114.20270 * 84.71668 * 14 13 12 16 16 N 1.47071 * 87.98371 * 220.34146 * 15 14 13 17 17 C 1.34777 * 136.06035 * 207.08434 * 16 15 14 18 18 O 1.21281 * 119.99666 * 4.95058 * 17 16 15 19 19 C 1.50691 * 120.00148 * 184.95548 * 17 16 15 20 20 C 1.53001 * 115.55247 * 65.48450 * 19 17 16 21 21 F 1.39901 * 109.47090 * 65.08739 * 20 19 17 22 22 C 1.53003 * 117.50156 * 211.15499 * 19 17 16 23 23 C 1.53004 * 117.49901 * 279.81376 * 19 17 16 24 24 C 1.47070 * 87.88396 * 27.34384 * 16 15 14 25 25 N 1.28718 * 108.26011 * 359.64000 * 13 12 11 26 26 N 1.28636 * 110.17901 * 0.23215 * 25 13 12 27 27 H 0.96994 * 120.00020 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00077 * 0.02562 * 9 7 2 29 29 H 1.09007 * 109.47345 * 59.99937 * 10 9 7 30 30 H 1.09007 * 109.47083 * 300.00249 * 10 9 7 31 31 H 1.08003 * 126.91714 * 0.02562 * 12 11 10 32 32 H 1.08997 * 113.28029 * 217.78306 * 14 13 12 33 33 H 1.09003 * 113.46973 * 105.56882 * 15 14 13 34 34 H 1.09001 * 113.47198 * 335.12475 * 15 14 13 35 35 H 1.09003 * 109.47386 * 185.08572 * 20 19 17 36 36 H 1.09001 * 109.46959 * 305.08933 * 20 19 17 37 37 H 1.08994 * 117.50512 * 215.00304 * 22 19 17 38 38 H 1.09000 * 117.49152 * 0.02562 * 22 19 17 39 39 H 1.08997 * 117.49673 * 359.97438 * 23 19 17 40 40 H 1.09008 * 117.49841 * 144.97258 * 23 19 17 41 41 H 1.09000 * 113.46841 * 87.43480 * 24 16 15 42 42 H 1.08996 * 113.46792 * 217.87661 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0789 -4.8022 0.0001 12 6 0.6277 -5.4824 -1.0795 13 7 -0.2305 -6.4152 -0.6057 14 6 -0.9702 -7.3894 -1.4119 15 6 -0.1809 -8.6648 -1.7383 16 7 -0.7571 -8.6131 -3.0905 17 6 -1.0491 -9.5071 -4.0559 18 8 -0.9078 -10.6933 -3.8466 19 6 -1.5509 -9.0328 -5.3953 20 6 -0.5556 -8.2156 -6.2213 21 9 0.5299 -9.0236 -6.5765 22 6 -2.5142 -9.9484 -6.1534 23 6 -3.0314 -8.6623 -5.5042 24 6 -0.8685 -7.1556 -2.9282 25 7 -0.2811 -6.3029 0.6756 26 7 0.4886 -5.3499 1.0682 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6849 -3.7145 0.8895 30 1 2.6849 -3.7144 -0.8906 31 1 0.8969 -5.3136 -2.1117 32 1 -1.9816 -7.5705 -1.0481 33 1 -0.5018 -9.5331 -1.1628 34 1 0.8997 -8.5230 -1.7212 35 1 -1.0462 -7.8492 -7.1231 36 1 -0.2015 -7.3702 -5.6313 37 1 -2.4388 -9.9686 -7.2406 38 1 -2.7852 -10.8936 -5.6831 39 1 -3.6424 -8.7620 -4.6071 40 1 -3.2962 -7.8360 -6.1640 41 1 0.0309 -6.6158 -3.2247 42 1 -1.7750 -6.7381 -3.3663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105325344.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:27 Heat of formation + Delta-G solvation = 108.282139 kcal Electronic energy + Delta-G solvation = -26580.167063 eV Core-core repulsion = 22515.467382 eV Total energy + Delta-G solvation = -4064.699682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.08926 -43.19828 -41.08487 -39.10076 -37.03087 -35.04928 -33.60161 -31.89716 -30.06080 -29.91387 -28.27548 -26.90608 -25.93608 -24.79616 -23.17378 -22.87052 -22.69797 -21.05908 -20.70426 -19.29351 -18.09514 -17.62009 -17.17598 -16.88925 -16.46696 -16.26024 -16.15034 -15.62172 -15.16020 -14.78420 -14.60457 -14.55859 -14.24150 -13.86830 -13.65051 -13.36577 -13.18654 -12.99065 -12.69283 -12.41443 -12.16687 -11.99504 -11.96766 -11.76083 -11.29899 -11.18662 -10.94637 -10.91763 -10.81824 -10.59787 -10.32401 -10.15331 -9.97447 -9.76644 -9.45293 -8.95630 -8.89206 -6.95022 -5.76600 -3.06433 1.64919 1.74278 1.88182 2.53712 2.81894 2.90361 3.31141 3.44512 3.49154 3.50178 3.51425 3.68587 3.98045 4.04353 4.12965 4.27043 4.43921 4.56886 4.59173 4.61615 4.66172 4.74169 4.82651 4.96099 4.98784 5.00134 5.12207 5.20772 5.26673 5.27132 5.40535 5.47789 5.57940 5.72276 6.13493 6.32167 6.59312 6.62193 6.72742 6.95217 7.50864 7.68454 8.40657 8.73406 9.52550 10.07538 10.43471 11.46037 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.002495 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.445985 B =11219.353048 C =12086.560724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.725 5.725 10 C 0.231 3.769 11 C 0.001 3.999 12 C -0.047 4.047 13 N -0.293 5.293 14 C 0.114 3.886 15 C 0.100 3.900 16 N -0.641 5.641 17 C 0.591 3.409 18 O -0.518 6.518 19 C -0.203 4.203 20 C 0.107 3.893 21 F -0.207 7.207 22 C -0.132 4.132 23 C -0.144 4.144 24 C 0.095 3.905 25 N -0.089 5.089 26 N -0.249 5.249 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.189 0.811 32 H 0.150 0.850 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 -19.562 -14.724 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.370 5.370 10 C 0.102 3.898 11 C -0.136 4.136 12 C -0.196 4.196 13 N -0.088 5.088 14 C 0.010 3.990 15 C -0.023 4.023 16 N -0.378 5.378 17 C 0.380 3.620 18 O -0.392 6.392 19 C -0.206 4.206 20 C 0.052 3.948 21 F -0.188 7.188 22 C -0.169 4.169 23 C -0.182 4.182 24 C -0.029 4.029 25 N -0.067 5.067 26 N -0.117 5.117 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.206 0.794 32 H 0.167 0.833 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.680 -20.842 -13.496 25.713 hybrid contribution 0.632 1.338 -1.032 1.804 sum -6.048 -19.504 -14.528 25.061 Atomic orbital electron populations 1.69666 1.05173 1.25800 1.57426 1.24755 0.95519 0.97717 1.02835 0.86238 0.78484 0.83368 0.77894 1.21233 1.21729 1.21157 1.19179 0.91077 0.83801 1.43136 0.90925 1.42286 1.05963 0.99216 1.89578 1.18972 0.90031 0.81365 0.99389 1.22493 1.02323 1.00521 0.88311 1.23320 0.98928 0.95262 1.02129 1.46994 1.30557 1.24528 1.06689 1.23371 0.97728 0.88027 0.89890 1.23422 0.99454 0.97755 0.81699 1.49136 1.63519 1.08259 1.16856 1.18786 0.76487 0.84322 0.82365 1.90752 1.52559 1.15718 1.80154 1.22025 0.94370 1.08328 0.95919 1.21387 0.83654 0.90798 0.98947 1.92828 1.56733 1.75864 1.93380 1.23078 0.98239 0.95505 1.00073 1.23144 0.90936 1.00124 1.03958 1.23517 1.04880 0.82508 0.92039 1.78322 1.19560 1.16834 0.91981 1.75137 1.06536 1.03790 1.26212 0.93445 0.78093 0.94231 0.94408 0.79433 0.83265 0.88323 0.88385 0.89177 0.89939 0.87171 0.87207 0.87545 0.86922 0.87841 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.37 5.59 -61.09 -0.34 -18.71 16 10 C 0.23 4.65 6.82 -5.20 -0.04 4.61 16 11 C 0.00 0.02 6.61 -82.78 -0.55 -0.53 16 12 C -0.05 -0.62 10.71 -17.05 -0.18 -0.80 16 13 N -0.29 -3.60 3.56 -54.44 -0.19 -3.80 16 14 C 0.11 0.88 5.35 -67.68 -0.36 0.52 16 15 C 0.10 0.79 8.42 -8.50 -0.07 0.72 16 16 N -0.64 -5.02 3.69 -185.06 -0.68 -5.71 16 17 C 0.59 5.85 7.30 -10.99 -0.08 5.77 16 18 O -0.52 -7.25 17.48 5.56 0.10 -7.15 16 19 C -0.20 -1.37 2.06 -155.66 -0.32 -1.69 16 20 C 0.11 0.64 7.36 37.16 0.27 0.91 16 21 F -0.21 -2.05 17.33 2.25 0.04 -2.01 16 22 C -0.13 -0.76 9.78 -26.69 -0.26 -1.02 16 23 C -0.14 -0.60 9.93 -26.69 -0.26 -0.86 16 24 C 0.09 0.54 7.30 -8.36 -0.06 0.48 16 25 N -0.09 -1.45 13.17 60.35 0.79 -0.66 16 26 N -0.25 -4.82 12.41 33.29 0.41 -4.41 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.39 10.51 7.66 -40.82 -0.31 10.20 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.19 1.79 6.77 -52.48 -0.36 1.43 16 32 H 0.15 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.30 8.09 -51.93 -0.42 -0.12 16 36 H 0.08 0.38 7.66 -51.93 -0.40 -0.02 16 37 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.76 8.00 -51.93 -0.42 0.35 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.24 8.14 -51.92 -0.42 -0.18 16 41 H 0.10 0.51 6.38 -51.93 -0.33 0.18 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -37.07 368.26 -6.37 -43.44 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.58 Total: 2.88 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.16 Total: 0.87 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.71 Total: -60.65 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.10 Total: -7.15 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.07 -6.37 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105325344.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.721 kcal (2) G-P(sol) polarization free energy of solvation -37.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds