Wall clock time and date at job start Tue Mar 31 2020 14:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99684 * 2 1 4 4 H 1.48508 * 109.46893 * 239.99707 * 3 2 1 5 5 H 1.48493 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47065 * 120.00296 * 3 2 1 7 7 C 1.38812 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99745 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00260 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47653 * 179.97438 * 10 9 7 12 12 C 1.35349 * 126.74937 * 95.24371 * 11 10 9 13 13 N 1.35313 * 106.17486 * 180.12936 * 12 11 10 14 14 C 1.46501 * 125.86867 * 179.90409 * 13 12 11 15 15 C 1.53496 * 114.20270 * 84.71668 * 14 13 12 16 16 N 1.47071 * 87.98371 * 220.34146 * 15 14 13 17 17 C 1.34777 * 136.06035 * 207.08434 * 16 15 14 18 18 O 1.21281 * 119.99666 * 4.95058 * 17 16 15 19 19 C 1.50691 * 120.00148 * 184.95548 * 17 16 15 20 20 C 1.53001 * 115.55247 * 65.48450 * 19 17 16 21 21 F 1.39901 * 109.47090 * 65.08739 * 20 19 17 22 22 C 1.53003 * 117.50156 * 211.15499 * 19 17 16 23 23 C 1.53004 * 117.49901 * 279.81376 * 19 17 16 24 24 C 1.47070 * 87.88396 * 27.34384 * 16 15 14 25 25 N 1.28718 * 108.26011 * 359.64000 * 13 12 11 26 26 N 1.28636 * 110.17901 * 0.23215 * 25 13 12 27 27 H 0.96994 * 120.00020 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00077 * 0.02562 * 9 7 2 29 29 H 1.09007 * 109.47345 * 59.99937 * 10 9 7 30 30 H 1.09007 * 109.47083 * 300.00249 * 10 9 7 31 31 H 1.08003 * 126.91714 * 0.02562 * 12 11 10 32 32 H 1.08997 * 113.28029 * 217.78306 * 14 13 12 33 33 H 1.09003 * 113.46973 * 105.56882 * 15 14 13 34 34 H 1.09001 * 113.47198 * 335.12475 * 15 14 13 35 35 H 1.09003 * 109.47386 * 185.08572 * 20 19 17 36 36 H 1.09001 * 109.46959 * 305.08933 * 20 19 17 37 37 H 1.08994 * 117.50512 * 215.00304 * 22 19 17 38 38 H 1.09000 * 117.49152 * 0.02562 * 22 19 17 39 39 H 1.08997 * 117.49673 * 359.97438 * 23 19 17 40 40 H 1.09008 * 117.49841 * 144.97258 * 23 19 17 41 41 H 1.09000 * 113.46841 * 87.43480 * 24 16 15 42 42 H 1.08996 * 113.46792 * 217.87661 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0789 -4.8022 0.0001 12 6 0.6277 -5.4824 -1.0795 13 7 -0.2305 -6.4152 -0.6057 14 6 -0.9702 -7.3894 -1.4119 15 6 -0.1809 -8.6648 -1.7383 16 7 -0.7571 -8.6131 -3.0905 17 6 -1.0491 -9.5071 -4.0559 18 8 -0.9078 -10.6933 -3.8466 19 6 -1.5509 -9.0328 -5.3953 20 6 -0.5556 -8.2156 -6.2213 21 9 0.5299 -9.0236 -6.5765 22 6 -2.5142 -9.9484 -6.1534 23 6 -3.0314 -8.6623 -5.5042 24 6 -0.8685 -7.1556 -2.9282 25 7 -0.2811 -6.3029 0.6756 26 7 0.4886 -5.3499 1.0682 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6849 -3.7145 0.8895 30 1 2.6849 -3.7144 -0.8906 31 1 0.8969 -5.3136 -2.1117 32 1 -1.9816 -7.5705 -1.0481 33 1 -0.5018 -9.5331 -1.1628 34 1 0.8997 -8.5230 -1.7212 35 1 -1.0462 -7.8492 -7.1231 36 1 -0.2015 -7.3702 -5.6313 37 1 -2.4388 -9.9686 -7.2406 38 1 -2.7852 -10.8936 -5.6831 39 1 -3.6424 -8.7620 -4.6071 40 1 -3.2962 -7.8360 -6.1640 41 1 0.0309 -6.6158 -3.2247 42 1 -1.7750 -6.7381 -3.3663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105325344.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:27 Heat of formation + Delta-G solvation = 81.068099 kcal Electronic energy + Delta-G solvation = -26581.347153 eV Core-core repulsion = 22515.467382 eV Total energy + Delta-G solvation = -4065.879771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.66173 -44.33621 -41.77327 -39.75502 -37.62812 -36.78227 -34.82504 -33.57344 -31.61796 -30.74875 -28.72300 -27.80412 -27.27252 -25.68226 -24.72149 -23.62291 -23.34774 -22.28788 -21.63627 -19.89082 -19.36262 -18.74601 -18.22323 -17.58506 -17.33344 -16.96383 -16.69055 -16.60547 -16.24765 -16.01586 -15.74523 -15.27877 -15.22523 -15.08198 -14.93590 -14.34749 -14.25699 -13.97181 -13.88004 -13.37129 -13.03603 -12.95055 -12.70875 -12.56919 -12.51366 -12.42940 -12.38083 -12.10493 -11.88061 -11.78543 -11.62358 -11.32051 -11.08307 -11.01565 -10.90914 -10.23017 -10.09992 -8.97924 -7.89954 -5.19755 0.56331 0.97326 1.20034 1.46999 1.54083 1.56360 1.62347 1.78678 2.49588 2.62066 2.66233 2.95193 3.26759 3.37677 3.43939 3.50654 3.61024 3.68537 3.79114 3.94472 4.06218 4.11323 4.15837 4.26444 4.28995 4.31484 4.35614 4.44746 4.51555 4.57946 4.63874 4.67928 4.82714 4.89577 4.92095 5.12803 5.14688 5.20389 5.54833 5.62975 6.30048 6.30947 6.80767 7.37350 7.51370 8.08875 8.34450 9.33623 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.002495 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.445985 B =11219.353048 C =12086.560724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.083 0.917 9 N -0.738 5.738 10 C 0.234 3.766 11 C -0.035 4.035 12 C -0.015 4.015 13 N -0.275 5.275 14 C 0.108 3.892 15 C 0.096 3.904 16 N -0.637 5.637 17 C 0.585 3.415 18 O -0.573 6.573 19 C -0.216 4.216 20 C 0.100 3.900 21 F -0.234 7.234 22 C -0.145 4.145 23 C -0.115 4.115 24 C 0.103 3.897 25 N -0.108 5.108 26 N -0.296 5.296 27 H 0.251 0.749 28 H 0.372 0.628 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.233 0.767 32 H 0.164 0.836 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.121 0.879 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 -18.826 -17.072 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.101 0.899 9 N -0.381 5.381 10 C 0.107 3.893 11 C -0.173 4.173 12 C -0.166 4.166 13 N -0.069 5.069 14 C 0.006 3.994 15 C -0.028 4.028 16 N -0.372 5.372 17 C 0.376 3.624 18 O -0.451 6.451 19 C -0.219 4.219 20 C 0.045 3.955 21 F -0.215 7.215 22 C -0.183 4.183 23 C -0.152 4.152 24 C -0.020 4.020 25 N -0.086 5.086 26 N -0.163 5.163 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.249 0.751 32 H 0.182 0.818 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.162 0.838 41 H 0.139 0.861 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.793 -20.129 -15.834 26.496 hybrid contribution 0.668 0.947 -0.304 1.198 sum -6.124 -19.182 -16.138 25.805 Atomic orbital electron populations 1.69831 1.06756 1.26107 1.59491 1.25586 0.96348 1.01156 1.03643 0.85182 0.77125 0.78945 0.78301 1.19734 1.22448 1.20763 1.19638 0.91754 0.84832 1.41245 0.89898 1.42483 1.05508 1.00588 1.89512 1.18985 0.90379 0.80286 0.99695 1.22292 1.03843 1.01435 0.89737 1.23775 0.96757 0.93277 1.02802 1.47264 1.29567 1.24225 1.05870 1.23764 0.97686 0.87023 0.90923 1.23439 0.99573 0.97632 0.82147 1.49116 1.62558 1.09330 1.16246 1.19432 0.75705 0.83792 0.83497 1.90722 1.55014 1.18091 1.81322 1.22041 0.95940 1.09628 0.94333 1.21751 0.82816 0.90439 1.00469 1.92774 1.58285 1.76811 1.93671 1.23148 0.98720 0.95517 1.00872 1.23291 0.88346 0.99669 1.03897 1.23726 1.07283 0.81162 0.89819 1.78221 1.19751 1.16671 0.93935 1.75067 1.07989 1.05263 1.28005 0.94076 0.79685 0.95594 0.91676 0.75117 0.81842 0.88904 0.88341 0.86018 0.88273 0.85601 0.89341 0.87550 0.83847 0.86122 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 3 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.74 -37.20 5.59 -347.18 -1.94 -39.15 16 10 C 0.23 9.23 6.82 85.63 0.58 9.82 16 11 C -0.03 -1.21 6.61 41.60 0.28 -0.93 16 12 C -0.02 -0.36 10.71 83.49 0.89 0.54 16 13 N -0.28 -6.17 3.56 -326.16 -1.16 -7.33 16 14 C 0.11 1.39 5.35 45.55 0.24 1.64 16 15 C 0.10 1.37 8.42 83.18 0.70 2.07 16 16 N -0.64 -8.59 3.69 -857.78 -3.16 -11.75 16 17 C 0.58 10.93 7.30 87.65 0.64 11.57 16 18 O -0.57 -16.46 17.48 -3.03 -0.05 -16.52 16 19 C -0.22 -2.42 2.06 -52.93 -0.11 -2.53 16 20 C 0.10 0.87 7.36 71.98 0.53 1.40 16 21 F -0.23 -4.28 17.33 44.97 0.78 -3.50 16 22 C -0.15 -1.44 9.78 30.62 0.30 -1.14 16 23 C -0.12 -0.55 9.93 30.62 0.30 -0.25 16 24 C 0.10 0.74 7.30 83.27 0.61 1.35 16 25 N -0.11 -3.47 13.17 37.02 0.49 -2.98 16 26 N -0.30 -11.53 12.41 -48.60 -0.60 -12.13 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 28 H 0.37 20.47 7.66 -92.71 -0.71 19.76 16 29 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.23 3.23 6.77 -2.91 -0.02 3.21 16 32 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.12 0.28 8.09 -2.39 -0.02 0.26 16 36 H 0.10 0.50 7.66 -2.39 -0.02 0.48 16 37 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 1.25 8.00 -2.39 -0.02 1.23 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.14 -0.15 8.14 -2.38 -0.02 -0.17 16 41 H 0.12 0.54 6.38 -2.39 -0.02 0.52 16 42 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -84.43 368.26 3.28 -81.15 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.35 Total: 16.44 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 6.28 Total: 7.32 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -6.10 Total: -132.10 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.05 Total: -16.52 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -84.43 3.28 -81.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105325344.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.217 kcal (2) G-P(sol) polarization free energy of solvation -84.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds