Wall clock time and date at job start Tue Mar 31 2020 14:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00298 * 2 1 4 4 H 1.48504 * 109.47506 * 240.00226 * 3 2 1 5 5 H 1.48506 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47228 * 119.99746 * 3 2 1 7 7 C 1.37878 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00536 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47400 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46981 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47401 * 179.97438 * 12 11 10 14 14 O 1.20829 * 119.99790 * 359.97438 * 13 12 11 15 15 O 1.34222 * 120.00399 * 179.97438 * 13 12 11 16 16 C 1.45204 * 117.00290 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47500 * 180.02562 * 16 15 13 18 18 N 1.30727 * 126.41680 * 270.00521 * 17 16 15 19 19 N 1.28803 * 109.72196 * 179.47071 * 18 17 16 20 20 C 1.30019 * 109.52300 * 359.59038 * 19 18 17 21 21 N 1.34994 * 126.41287 * 89.99830 * 17 16 15 22 22 C 1.46248 * 127.76778 * 1.80442 * 21 17 16 23 23 C 1.53151 * 109.28693 * 207.15884 * 22 21 17 24 24 O 1.42889 * 109.70865 * 272.33561 * 23 22 21 25 25 C 1.42400 * 114.93003 * 61.25221 * 24 23 22 26 26 C 1.50675 * 127.88018 * 182.28085 * 20 19 18 27 27 H 0.96992 * 119.99986 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47293 * 59.99819 * 9 7 2 29 29 H 1.09007 * 109.46801 * 299.99954 * 9 7 2 30 30 H 1.08998 * 109.47133 * 59.99614 * 10 9 7 31 31 H 1.08998 * 109.46926 * 299.99524 * 10 9 7 32 32 H 1.08998 * 109.47554 * 59.99808 * 11 10 9 33 33 H 1.08998 * 109.46850 * 299.99507 * 11 10 9 34 34 H 1.08998 * 109.47133 * 59.99550 * 12 11 10 35 35 H 1.08998 * 109.46926 * 299.99461 * 12 11 10 36 36 H 1.09002 * 109.46971 * 60.00444 * 16 15 13 37 37 H 1.08995 * 109.47162 * 300.00403 * 16 15 13 38 38 H 1.09006 * 109.50162 * 87.21382 * 22 21 17 39 39 H 1.09005 * 109.53082 * 327.12087 * 22 21 17 40 40 H 1.09002 * 109.42471 * 32.39464 * 23 22 21 41 41 H 1.08998 * 109.42636 * 152.27750 * 23 22 21 42 42 H 1.09002 * 109.43770 * 273.23856 * 25 24 23 43 43 H 1.09005 * 109.49153 * 153.25019 * 25 24 23 44 44 H 1.08996 * 109.59097 * 344.60819 * 26 20 19 45 45 H 1.09008 * 109.57900 * 105.03636 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0018 13 6 1.7211 -7.4552 0.0018 14 8 0.5128 -7.4552 0.0018 15 8 2.3921 -8.6176 0.0018 16 6 1.6013 -9.8354 0.0024 17 6 2.5193 -11.0305 0.0029 18 7 2.9921 -11.6465 -1.0488 19 7 3.7524 -12.6179 -0.6783 20 6 3.8043 -12.6582 0.6202 21 7 3.0074 -11.6655 1.0896 22 6 2.7360 -11.3712 2.4962 23 6 3.9283 -11.8203 3.3462 24 8 3.7685 -13.1917 3.7140 25 6 3.7127 -14.1036 2.6216 26 6 4.6061 -13.5957 1.4854 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8713 -3.6040 0.8922 31 1 2.8726 -3.6048 -0.8877 32 1 0.8546 -5.0450 -0.8894 33 1 0.8527 -5.0447 0.8905 34 1 3.1005 -6.0923 0.8922 35 1 3.1017 -6.0923 -0.8877 36 1 0.9722 -9.8605 -0.8874 37 1 0.9728 -9.8600 0.8926 38 1 1.8408 -11.9059 2.8138 39 1 2.5832 -10.2992 2.6213 40 1 4.8473 -11.7038 2.7718 41 1 3.9832 -11.2077 4.2461 42 1 2.6848 -14.1832 2.2677 43 1 4.0616 -15.0835 2.9477 44 1 4.9518 -14.4390 0.8876 45 1 5.4622 -13.0655 1.9028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123100885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:30 Heat of formation + Delta-G solvation = -63.254145 kcal Electronic energy + Delta-G solvation = -26439.156527 eV Core-core repulsion = 22458.186028 eV Total energy + Delta-G solvation = -3980.970499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.91133 -40.64846 -39.67480 -37.02885 -35.53340 -35.05643 -33.73508 -32.73858 -31.55748 -30.10609 -29.50271 -27.74565 -26.08079 -25.65023 -22.93991 -22.42539 -21.88763 -21.36944 -20.74090 -20.09491 -18.34661 -17.81592 -17.63346 -16.95519 -16.63377 -16.40380 -16.29052 -16.17625 -15.71439 -15.06894 -14.74896 -14.55499 -14.35813 -14.02622 -13.55306 -13.27079 -12.94019 -12.88562 -12.70982 -12.58364 -12.36624 -12.30751 -11.81291 -11.72818 -11.71213 -11.17648 -11.03261 -10.81831 -10.77266 -10.68141 -10.63476 -10.54248 -10.50162 -10.42536 -9.69407 -9.66442 -9.32215 -9.06436 -8.33902 -5.98807 -4.01586 0.99128 1.74882 2.09995 2.13500 2.73963 2.91395 3.33355 3.37945 3.40081 3.45323 3.55559 3.71262 3.98203 4.09639 4.12500 4.23932 4.44413 4.46137 4.55631 4.64223 4.72148 4.81273 4.89405 5.02486 5.12446 5.15552 5.17608 5.20127 5.29386 5.36649 5.53986 5.61546 5.98729 6.07446 6.14408 6.18830 6.31248 6.40372 6.70851 6.88733 7.11585 7.60021 7.68737 7.83219 8.01432 8.18504 8.43080 9.05618 9.62304 11.12424 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.001791 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.445722 B =15632.514193 C =16016.684944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.110 4.110 13 C 0.464 3.536 14 O -0.499 6.499 15 O -0.358 6.358 16 C 0.155 3.845 17 C 0.177 3.823 18 N -0.265 5.265 19 N -0.281 5.281 20 C 0.177 3.823 21 N -0.463 5.463 22 C 0.061 3.939 23 C 0.046 3.954 24 O -0.375 6.375 25 C 0.058 3.942 26 C -0.076 4.076 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.058 0.942 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 -30.642 8.159 32.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.147 4.147 13 C 0.307 3.693 14 O -0.385 6.385 15 O -0.274 6.274 16 C 0.079 3.921 17 C -0.090 4.090 18 N -0.108 5.108 19 N -0.121 5.121 20 C -0.090 4.090 21 N -0.155 5.155 22 C -0.062 4.062 23 C -0.031 4.031 24 O -0.294 6.294 25 C -0.020 4.020 26 C -0.115 4.115 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.127 0.873 44 H 0.137 0.863 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.082 -30.927 6.919 32.705 hybrid contribution -0.008 1.307 0.957 1.620 sum 8.073 -29.620 7.876 31.694 Atomic orbital electron populations 1.69956 1.06049 1.26693 1.50721 1.25039 0.94858 0.99266 0.95384 0.86657 0.79568 0.83174 0.78575 1.20259 1.21308 1.20278 1.21229 0.92975 0.91137 1.50711 0.92744 1.19094 0.94011 0.91202 0.97381 1.21654 0.99178 0.93487 1.00465 1.21599 0.97056 0.92612 1.03354 1.21652 1.00012 0.87360 1.05719 1.24327 0.87704 0.85341 0.71898 1.90702 1.15502 1.87557 1.44762 1.86589 1.41716 1.14326 1.84816 1.20836 0.88922 0.77001 1.05363 1.24032 1.02852 0.98932 0.83139 1.74476 1.08969 1.03881 1.23429 1.74216 1.15606 1.14597 1.07697 1.24699 0.97528 0.93933 0.92849 1.46171 1.35664 1.25100 1.08568 1.22883 1.01683 1.04754 0.76860 1.23057 0.95835 0.83614 1.00637 1.87905 1.94002 1.15463 1.32032 1.22768 0.99106 0.93945 0.86135 1.20908 0.97128 0.98008 0.95451 0.92950 0.96499 0.96555 0.93198 0.93126 0.91371 0.91480 0.87809 0.87567 0.87149 0.89119 0.87792 0.86947 0.90939 0.85628 0.92332 0.87275 0.86331 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.11 -1.36 5.81 -27.88 -0.16 -1.52 16 13 C 0.46 6.04 7.96 36.00 0.29 6.33 16 14 O -0.50 -7.84 15.73 -18.75 -0.30 -8.13 16 15 O -0.36 -4.16 10.20 -39.24 -0.40 -4.56 16 16 C 0.16 1.55 5.73 36.01 0.21 1.75 16 17 C 0.18 1.93 7.68 -155.27 -1.19 0.73 16 18 N -0.27 -3.62 12.23 32.74 0.40 -3.22 16 19 N -0.28 -3.54 12.21 32.75 0.40 -3.14 16 20 C 0.18 1.57 7.01 -155.25 -1.09 0.48 16 21 N -0.46 -3.85 3.06 -110.92 -0.34 -4.19 16 22 C 0.06 0.29 6.17 -4.10 -0.03 0.27 16 23 C 0.05 0.17 6.42 37.24 0.24 0.41 16 24 O -0.38 -1.89 10.73 -35.23 -0.38 -2.27 16 25 C 0.06 0.22 6.62 37.26 0.25 0.47 16 26 C -0.08 -0.35 5.60 -27.79 -0.16 -0.51 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.11 1.12 8.13 -51.93 -0.42 0.69 16 37 H 0.09 0.71 7.95 -51.93 -0.41 0.30 16 38 H 0.10 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.11 0.44 8.00 -51.93 -0.42 0.02 16 40 H 0.07 0.29 5.70 -51.93 -0.30 -0.01 16 41 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.06 0.27 7.83 -51.93 -0.41 -0.13 16 43 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.11 0.39 6.45 -51.92 -0.34 0.05 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -36.13 374.18 -8.61 -44.73 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -6.90 Total: -6.17 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -2.45 Total: -8.96 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 1.20 Total: -36.89 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.07 Total: -14.97 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.13 -8.61 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123100885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.521 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds