Wall clock time and date at job start Tue Mar 31 2020 14:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00298 * 2 1 4 4 H 1.48504 * 109.47506 * 240.00226 * 3 2 1 5 5 H 1.48506 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47228 * 119.99746 * 3 2 1 7 7 C 1.37878 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00536 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47400 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46981 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47401 * 179.97438 * 12 11 10 14 14 O 1.20829 * 119.99790 * 359.97438 * 13 12 11 15 15 O 1.34222 * 120.00399 * 179.97438 * 13 12 11 16 16 C 1.45204 * 117.00290 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47500 * 180.02562 * 16 15 13 18 18 N 1.30727 * 126.41680 * 270.00521 * 17 16 15 19 19 N 1.28803 * 109.72196 * 179.47071 * 18 17 16 20 20 C 1.30019 * 109.52300 * 359.59038 * 19 18 17 21 21 N 1.34994 * 126.41287 * 89.99830 * 17 16 15 22 22 C 1.46248 * 127.76778 * 1.80442 * 21 17 16 23 23 C 1.53151 * 109.28693 * 207.15884 * 22 21 17 24 24 O 1.42889 * 109.70865 * 272.33561 * 23 22 21 25 25 C 1.42400 * 114.93003 * 61.25221 * 24 23 22 26 26 C 1.50675 * 127.88018 * 182.28085 * 20 19 18 27 27 H 0.96992 * 119.99986 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47293 * 59.99819 * 9 7 2 29 29 H 1.09007 * 109.46801 * 299.99954 * 9 7 2 30 30 H 1.08998 * 109.47133 * 59.99614 * 10 9 7 31 31 H 1.08998 * 109.46926 * 299.99524 * 10 9 7 32 32 H 1.08998 * 109.47554 * 59.99808 * 11 10 9 33 33 H 1.08998 * 109.46850 * 299.99507 * 11 10 9 34 34 H 1.08998 * 109.47133 * 59.99550 * 12 11 10 35 35 H 1.08998 * 109.46926 * 299.99461 * 12 11 10 36 36 H 1.09002 * 109.46971 * 60.00444 * 16 15 13 37 37 H 1.08995 * 109.47162 * 300.00403 * 16 15 13 38 38 H 1.09006 * 109.50162 * 87.21382 * 22 21 17 39 39 H 1.09005 * 109.53082 * 327.12087 * 22 21 17 40 40 H 1.09002 * 109.42471 * 32.39464 * 23 22 21 41 41 H 1.08998 * 109.42636 * 152.27750 * 23 22 21 42 42 H 1.09002 * 109.43770 * 273.23856 * 25 24 23 43 43 H 1.09005 * 109.49153 * 153.25019 * 25 24 23 44 44 H 1.08996 * 109.59097 * 344.60819 * 26 20 19 45 45 H 1.09008 * 109.57900 * 105.03636 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0018 13 6 1.7211 -7.4552 0.0018 14 8 0.5128 -7.4552 0.0018 15 8 2.3921 -8.6176 0.0018 16 6 1.6013 -9.8354 0.0024 17 6 2.5193 -11.0305 0.0029 18 7 2.9921 -11.6465 -1.0488 19 7 3.7524 -12.6179 -0.6783 20 6 3.8043 -12.6582 0.6202 21 7 3.0074 -11.6655 1.0896 22 6 2.7360 -11.3712 2.4962 23 6 3.9283 -11.8203 3.3462 24 8 3.7685 -13.1917 3.7140 25 6 3.7127 -14.1036 2.6216 26 6 4.6061 -13.5957 1.4854 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8713 -3.6040 0.8922 31 1 2.8726 -3.6048 -0.8877 32 1 0.8546 -5.0450 -0.8894 33 1 0.8527 -5.0447 0.8905 34 1 3.1005 -6.0923 0.8922 35 1 3.1017 -6.0923 -0.8877 36 1 0.9722 -9.8605 -0.8874 37 1 0.9728 -9.8600 0.8926 38 1 1.8408 -11.9059 2.8138 39 1 2.5832 -10.2992 2.6213 40 1 4.8473 -11.7038 2.7718 41 1 3.9832 -11.2077 4.2461 42 1 2.6848 -14.1832 2.2677 43 1 4.0616 -15.0835 2.9477 44 1 4.9518 -14.4390 0.8876 45 1 5.4622 -13.0655 1.9028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123100885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:29 Heat of formation + Delta-G solvation = -85.521256 kcal Electronic energy + Delta-G solvation = -26440.122101 eV Core-core repulsion = 22458.186028 eV Total energy + Delta-G solvation = -3981.936074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.63060 -41.66978 -40.05055 -38.06185 -36.64253 -36.13129 -34.67407 -34.28542 -32.24977 -31.56028 -30.10148 -28.64646 -27.43357 -26.41836 -24.55208 -22.81804 -22.63196 -22.13701 -21.96390 -21.50718 -18.94410 -18.63524 -18.37862 -18.33305 -17.88300 -17.26916 -17.00558 -16.87168 -16.49647 -16.33749 -16.12258 -15.32750 -15.27032 -14.66395 -14.57027 -14.43358 -14.07563 -13.75696 -13.60326 -13.47115 -13.30412 -13.22498 -13.06056 -12.85555 -12.80762 -12.39538 -12.31814 -12.19637 -12.18820 -12.03567 -11.75436 -11.50661 -11.37620 -11.37365 -11.29836 -11.07700 -10.78716 -10.53012 -10.41697 -8.17865 -6.29376 0.25249 1.07570 1.12304 1.35716 1.41450 1.44719 1.52525 1.86890 2.42691 2.64492 2.82803 3.03873 3.15107 3.22139 3.46819 3.64915 3.69976 3.77095 3.85689 3.92663 4.04191 4.08619 4.11363 4.23843 4.42241 4.52448 4.52584 4.58703 4.62108 4.63557 4.73744 4.78398 4.86184 4.87563 4.92636 5.12269 5.15439 5.32842 5.37569 5.57325 5.58237 5.79310 5.89556 6.00040 6.26570 6.59712 6.89003 7.40055 7.40402 8.93858 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.001791 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.445722 B =15632.514193 C =16016.684944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.100 4.100 12 C -0.101 4.101 13 C 0.473 3.527 14 O -0.532 6.532 15 O -0.355 6.355 16 C 0.156 3.844 17 C 0.172 3.828 18 N -0.309 5.309 19 N -0.324 5.324 20 C 0.187 3.813 21 N -0.458 5.458 22 C 0.054 3.946 23 C 0.047 3.953 24 O -0.386 6.386 25 C 0.061 3.939 26 C -0.072 4.072 27 H 0.262 0.738 28 H -0.014 1.014 29 H -0.011 1.011 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.048 0.952 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.651 -31.159 9.781 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.135 4.135 11 C -0.138 4.138 12 C -0.138 4.138 13 C 0.318 3.682 14 O -0.420 6.420 15 O -0.271 6.271 16 C 0.080 3.920 17 C -0.096 4.096 18 N -0.151 5.151 19 N -0.165 5.165 20 C -0.081 4.081 21 N -0.149 5.149 22 C -0.067 4.067 23 C -0.030 4.030 24 O -0.304 6.304 25 C -0.016 4.016 26 C -0.112 4.112 27 H 0.071 0.929 28 H 0.005 0.995 29 H 0.007 0.993 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.166 0.834 42 H 0.066 0.934 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.355 -31.467 8.554 34.214 hybrid contribution -0.734 1.395 0.491 1.651 sum 9.622 -30.072 9.044 32.844 Atomic orbital electron populations 1.70109 1.07939 1.27760 1.51829 1.26052 0.95780 1.03600 0.94881 0.85476 0.78199 0.77941 0.79273 1.19142 1.21152 1.18905 1.21733 0.93747 0.92298 1.50263 0.91654 1.19058 0.94690 0.93550 0.94598 1.21444 0.97918 0.92473 1.01626 1.21365 0.97395 0.92962 1.02082 1.21522 0.98935 0.85271 1.08122 1.24308 0.87116 0.85839 0.70955 1.90703 1.16886 1.87991 1.46436 1.86553 1.41709 1.14437 1.84387 1.20957 0.88709 0.76057 1.06280 1.24050 1.02939 0.99082 0.83578 1.74360 1.10351 1.05083 1.25342 1.74112 1.16984 1.15458 1.09898 1.25420 0.96601 0.93701 0.92334 1.46382 1.34830 1.24350 1.09386 1.23217 1.02735 1.05784 0.74958 1.23177 0.95060 0.83414 1.01308 1.87904 1.93969 1.16030 1.32536 1.22822 0.98424 0.94764 0.85590 1.21135 0.97076 0.97707 0.95233 0.92889 0.99543 0.99263 0.91670 0.92120 0.93109 0.92535 0.84844 0.85646 0.87742 0.86823 0.86894 0.85740 0.91040 0.83412 0.93351 0.84989 0.85099 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.71 5.15 30.59 0.16 -3.55 16 11 C -0.10 -3.23 4.50 30.59 0.14 -3.09 16 12 C -0.10 -2.28 5.81 29.85 0.17 -2.10 16 13 C 0.47 11.65 7.96 71.23 0.57 12.22 16 14 O -0.53 -16.48 15.73 21.95 0.35 -16.13 16 15 O -0.35 -7.73 10.20 -51.34 -0.52 -8.25 16 16 C 0.16 3.00 5.73 71.24 0.41 3.41 16 17 C 0.17 3.67 7.68 138.08 1.06 4.73 16 18 N -0.31 -8.62 12.23 -50.34 -0.62 -9.24 16 19 N -0.32 -8.29 12.21 -50.31 -0.61 -8.90 16 20 C 0.19 3.17 7.01 138.06 0.97 4.14 16 21 N -0.46 -7.07 3.06 -504.85 -1.55 -8.62 16 22 C 0.05 0.40 6.17 86.48 0.53 0.93 16 23 C 0.05 0.23 6.42 72.03 0.46 0.69 16 24 O -0.39 -2.87 10.73 -148.98 -1.60 -4.47 16 25 C 0.06 0.34 6.62 72.05 0.48 0.81 16 26 C -0.07 -0.53 5.60 29.91 0.17 -0.37 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 34 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.10 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.11 1.64 7.95 -2.39 -0.02 1.62 16 38 H 0.11 0.66 8.09 -2.38 -0.02 0.64 16 39 H 0.12 0.64 8.00 -2.38 -0.02 0.62 16 40 H 0.07 0.38 5.70 -2.39 -0.01 0.37 16 41 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.05 0.38 7.83 -2.39 -0.02 0.36 16 43 H 0.13 0.14 8.14 -2.38 -0.02 0.12 16 44 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.12 0.58 6.45 -2.38 -0.02 0.56 16 Total: -1.00 -80.60 374.18 4.70 -75.90 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 0.99 Total: 2.47 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.96 Total: -11.42 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.49 Total: -84.26 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.78 Total: -28.85 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -80.60 4.70 -75.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123100885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.620 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds