Wall clock time and date at job start Tue Mar 31 2020 13:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 120.00011 * 2 1 4 4 N 1.34775 * 120.00072 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00181 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47559 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47271 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46953 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46952 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47298 * 180.02562 * 9 8 7 11 11 O 1.20833 * 119.99655 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00432 * 180.27351 * 10 9 8 13 13 C 1.45201 * 117.00137 * 179.71953 * 12 10 9 14 14 H 1.08993 * 109.47491 * 330.00073 * 13 12 10 15 15 C 1.50706 * 109.46887 * 90.00045 * 13 12 10 16 16 H 1.08001 * 119.99914 * 239.99856 * 15 13 12 17 17 C 1.37878 * 119.99966 * 60.00384 * 15 13 12 18 18 N 1.31520 * 119.99989 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00079 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47012 * 59.99575 * 19 17 15 21 21 H 1.48497 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47135 * 299.99921 * 19 17 15 23 23 C 1.50704 * 109.46907 * 209.99697 * 13 12 10 24 24 C 1.34516 * 125.78433 * 145.00355 * 23 13 12 25 25 C 1.41385 * 106.84086 * 179.97438 * 24 23 13 26 26 C 1.34521 * 106.83744 * 0.02562 * 25 24 23 27 27 O 1.34299 * 125.79250 * 324.69650 * 23 13 12 28 28 H 1.08998 * 109.46945 * 269.99616 * 1 2 3 29 29 H 1.08998 * 109.47145 * 29.99509 * 1 2 3 30 30 H 1.08996 * 109.46861 * 149.99972 * 1 2 3 31 31 H 0.97002 * 120.00040 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47293 * 59.99699 * 5 4 2 33 33 H 1.08998 * 109.47265 * 299.99934 * 5 4 2 34 34 H 1.09008 * 109.46645 * 60.00008 * 6 5 4 35 35 H 1.08998 * 109.47049 * 300.00398 * 6 5 4 36 36 H 1.09000 * 109.47439 * 60.00118 * 7 6 5 37 37 H 1.08998 * 109.47408 * 300.00176 * 7 6 5 38 38 H 1.08994 * 109.47101 * 60.00033 * 8 7 6 39 39 H 1.09006 * 109.46726 * 299.99825 * 8 7 6 40 40 H 1.09000 * 109.47764 * 59.99520 * 9 8 7 41 41 H 1.09006 * 109.46938 * 299.99298 * 9 8 7 42 42 H 0.97003 * 119.99499 * 180.02562 * 18 17 15 43 43 H 1.07996 * 126.58313 * 0.03006 * 24 23 13 44 44 H 1.07992 * 126.58013 * 179.97438 * 25 24 23 45 45 H 1.07996 * 125.78786 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1560 -2.6097 -0.0010 7 6 5.6860 -2.6096 -0.0009 8 6 6.1960 -4.0522 -0.0014 9 6 7.7259 -4.0521 -0.0007 10 6 8.2284 -5.4729 -0.0019 11 8 7.4431 -6.3913 -0.0027 12 8 9.5480 -5.7182 0.0040 13 6 9.9596 -7.1106 0.0088 14 1 9.2072 -7.7102 0.5209 15 6 10.1078 -7.5955 -1.4104 16 1 9.5086 -8.4213 -1.7642 17 6 11.0085 -6.9848 -2.2570 18 7 11.7380 -5.9788 -1.8262 19 14 11.1928 -7.5862 -4.0159 20 1 9.8926 -7.4574 -4.7218 21 1 12.2175 -6.7689 -4.7138 22 1 11.6141 -9.0102 -4.0106 23 6 11.2792 -7.2418 0.7249 24 6 11.6578 -8.2794 1.4926 25 6 12.9594 -7.9884 1.9617 26 6 13.2981 -6.7900 1.4531 27 8 12.2788 -6.3452 0.7001 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6959 -2.0072 -0.0005 32 1 4.0096 -0.6535 0.8888 33 1 4.0089 -0.6532 -0.8911 34 1 3.7923 -3.1237 -0.8908 35 1 3.7930 -3.1233 0.8892 36 1 6.0493 -2.0957 0.8890 37 1 6.0494 -2.0958 -0.8909 38 1 5.8327 -4.5656 -0.8916 39 1 5.8326 -4.5663 0.8884 40 1 8.0890 -3.5387 0.8896 41 1 8.0897 -3.5379 -0.8904 42 1 12.3714 -5.5489 -2.4221 43 1 11.0790 -9.1653 1.7084 44 1 13.5651 -8.6088 2.6056 45 1 14.2331 -6.2754 1.6180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:46 Heat of formation + Delta-G solvation = -131.260748 kcal Electronic energy + Delta-G solvation = -26326.407581 eV Core-core repulsion = 22310.195343 eV Total energy + Delta-G solvation = -4016.212238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31609 -39.84122 -39.24108 -36.63250 -35.52147 -34.32724 -32.94378 -31.84237 -31.63218 -30.05032 -29.59842 -26.79578 -26.20836 -23.46951 -22.41659 -21.49303 -20.69365 -20.54443 -19.60827 -19.38858 -17.11622 -17.05056 -16.57580 -16.37492 -16.33094 -16.08903 -15.59981 -15.07863 -14.93319 -14.68451 -14.44963 -13.87742 -13.77236 -13.39230 -13.10170 -12.93005 -12.81524 -12.55324 -12.20602 -12.06677 -11.85501 -11.76483 -11.56532 -11.36369 -11.21721 -11.16217 -11.04610 -10.98283 -10.93980 -10.51442 -10.39780 -10.18003 -9.83242 -9.46587 -9.38786 -9.06818 -8.83206 -8.76014 -7.34619 -6.22916 -4.45053 2.34055 2.90277 2.92931 3.20463 3.24998 3.26790 3.30643 3.57623 3.90429 4.24345 4.26377 4.46732 4.62908 4.73524 4.82527 4.91812 4.99935 5.08728 5.20228 5.29145 5.37277 5.48214 5.54454 5.56434 5.73403 5.78753 5.85764 5.89826 5.94206 6.01654 6.02138 6.13960 6.32678 6.38603 6.45562 6.47986 6.80347 6.89962 7.17729 7.20389 7.48335 7.61552 7.79612 7.82660 7.91207 8.40812 8.58244 8.99843 9.28886 10.76116 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.002114 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.015333 B =13239.740767 C =14091.880580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.549 6.549 4 N -0.732 5.732 5 C 0.115 3.885 6 C -0.131 4.131 7 C -0.116 4.116 8 C -0.105 4.105 9 C -0.116 4.116 10 C 0.457 3.543 11 O -0.534 6.534 12 O -0.336 6.336 13 C 0.279 3.721 14 H 0.070 0.930 15 C -0.549 4.549 16 H 0.073 0.927 17 C 0.080 3.920 18 N -0.827 5.827 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.082 3.918 24 C -0.266 4.266 25 C -0.221 4.221 26 C -0.082 4.082 27 O -0.116 6.116 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.268 0.732 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 7.203 4.853 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.427 6.427 4 N -0.384 5.384 5 C -0.008 4.008 6 C -0.168 4.168 7 C -0.155 4.155 8 C -0.143 4.143 9 C -0.154 4.154 10 C 0.301 3.699 11 O -0.426 6.426 12 O -0.251 6.251 13 C 0.227 3.773 14 H 0.088 0.912 15 C -0.585 4.585 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.460 5.460 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.028 3.972 24 C -0.285 4.285 25 C -0.240 4.240 26 C -0.152 4.152 27 O -0.008 6.008 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.343 8.103 4.655 16.290 hybrid contribution 0.261 -1.172 -0.920 1.513 sum -13.082 6.931 3.735 15.269 Atomic orbital electron populations 1.21886 0.91719 1.04888 1.04766 1.20843 0.90663 0.83525 0.75593 1.90736 1.70898 1.31480 1.49587 1.46159 1.07846 1.08778 1.75626 1.21446 0.79146 0.97693 1.02552 1.21798 0.96886 0.95110 1.03042 1.21509 0.93751 0.97417 1.02781 1.21365 0.93439 0.95784 1.03665 1.21331 0.96198 0.92821 1.05081 1.23244 0.82414 0.91667 0.72557 1.90535 1.57426 1.47155 1.47517 1.86722 1.22747 1.34744 1.80880 1.18765 0.85195 0.77880 0.95504 0.91196 1.21201 1.23910 1.18848 0.94540 0.90894 1.25168 0.94340 0.94316 0.99263 1.70047 1.20823 1.19422 1.35675 0.86559 0.78189 0.79166 0.83691 1.19758 1.20853 1.19764 1.22844 0.90644 0.88976 0.94720 1.21169 0.98229 1.01917 1.07187 1.21494 0.97608 0.98315 1.06630 1.23795 0.94503 0.97658 0.99205 1.84416 1.21148 1.42335 1.52917 0.88870 0.88916 0.90166 0.76425 0.91415 0.91361 0.91069 0.91136 0.91451 0.91361 0.91015 0.91240 0.88755 0.88360 0.92230 0.84953 0.85166 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.30 36.01 0.37 -0.47 16 2 C 0.51 4.69 7.94 -10.98 -0.09 4.60 16 3 O -0.55 -7.79 17.10 5.56 0.09 -7.69 16 4 N -0.73 -5.44 5.56 -60.29 -0.33 -5.78 16 5 C 0.12 0.99 5.67 -4.04 -0.02 0.97 16 6 C -0.13 -1.02 5.33 -26.73 -0.14 -1.17 16 7 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 8 C -0.10 -1.33 4.50 -26.73 -0.12 -1.45 16 9 C -0.12 -1.79 5.81 -27.89 -0.16 -1.96 16 10 C 0.46 9.83 7.92 36.00 0.29 10.12 16 11 O -0.53 -12.48 15.20 -18.76 -0.29 -12.77 16 12 O -0.34 -8.36 9.25 -41.99 -0.39 -8.75 16 13 C 0.28 7.19 2.58 -29.03 -0.07 7.12 16 14 H 0.07 1.77 7.15 -51.93 -0.37 1.40 16 15 C -0.55 -15.03 8.91 -34.44 -0.31 -15.34 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.08 2.14 5.24 -17.82 -0.09 2.05 16 18 N -0.83 -22.66 10.62 55.43 0.59 -22.07 16 19 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 C 0.08 2.03 5.59 -35.62 -0.20 1.84 16 24 C -0.27 -5.90 10.81 -39.70 -0.43 -6.33 16 25 C -0.22 -4.38 10.91 -39.70 -0.43 -4.81 16 26 C -0.08 -1.68 12.09 29.42 0.36 -1.32 16 27 O -0.12 -2.88 8.87 2.21 0.02 -2.87 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.40 1.83 8.47 -40.82 -0.35 1.48 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.13 2.67 8.06 -52.49 -0.42 2.24 16 44 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.18 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -34.50 387.96 -7.70 -42.20 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.02 Total: 3.58 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.20 Total: -7.40 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 0.25 Total: -27.85 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.56 Total: -32.08 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.50 -7.70 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.059 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds