Wall clock time and date at job start Tue Mar 31 2020 13:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 120.00011 * 2 1 4 4 N 1.34775 * 120.00072 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00181 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47559 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47271 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46953 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46952 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47298 * 180.02562 * 9 8 7 11 11 O 1.20833 * 119.99655 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00432 * 180.27351 * 10 9 8 13 13 C 1.45201 * 117.00137 * 179.71953 * 12 10 9 14 14 H 1.08993 * 109.47491 * 330.00073 * 13 12 10 15 15 C 1.50706 * 109.46887 * 90.00045 * 13 12 10 16 16 H 1.08001 * 119.99914 * 239.99856 * 15 13 12 17 17 C 1.37878 * 119.99966 * 60.00384 * 15 13 12 18 18 N 1.31520 * 119.99989 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00079 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47012 * 59.99575 * 19 17 15 21 21 H 1.48497 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47135 * 299.99921 * 19 17 15 23 23 C 1.50704 * 109.46907 * 209.99697 * 13 12 10 24 24 C 1.34516 * 125.78433 * 145.00355 * 23 13 12 25 25 C 1.41385 * 106.84086 * 179.97438 * 24 23 13 26 26 C 1.34521 * 106.83744 * 0.02562 * 25 24 23 27 27 O 1.34299 * 125.79250 * 324.69650 * 23 13 12 28 28 H 1.08998 * 109.46945 * 269.99616 * 1 2 3 29 29 H 1.08998 * 109.47145 * 29.99509 * 1 2 3 30 30 H 1.08996 * 109.46861 * 149.99972 * 1 2 3 31 31 H 0.97002 * 120.00040 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47293 * 59.99699 * 5 4 2 33 33 H 1.08998 * 109.47265 * 299.99934 * 5 4 2 34 34 H 1.09008 * 109.46645 * 60.00008 * 6 5 4 35 35 H 1.08998 * 109.47049 * 300.00398 * 6 5 4 36 36 H 1.09000 * 109.47439 * 60.00118 * 7 6 5 37 37 H 1.08998 * 109.47408 * 300.00176 * 7 6 5 38 38 H 1.08994 * 109.47101 * 60.00033 * 8 7 6 39 39 H 1.09006 * 109.46726 * 299.99825 * 8 7 6 40 40 H 1.09000 * 109.47764 * 59.99520 * 9 8 7 41 41 H 1.09006 * 109.46938 * 299.99298 * 9 8 7 42 42 H 0.97003 * 119.99499 * 180.02562 * 18 17 15 43 43 H 1.07996 * 126.58313 * 0.03006 * 24 23 13 44 44 H 1.07992 * 126.58013 * 179.97438 * 25 24 23 45 45 H 1.07996 * 125.78786 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1560 -2.6097 -0.0010 7 6 5.6860 -2.6096 -0.0009 8 6 6.1960 -4.0522 -0.0014 9 6 7.7259 -4.0521 -0.0007 10 6 8.2284 -5.4729 -0.0019 11 8 7.4431 -6.3913 -0.0027 12 8 9.5480 -5.7182 0.0040 13 6 9.9596 -7.1106 0.0088 14 1 9.2072 -7.7102 0.5209 15 6 10.1078 -7.5955 -1.4104 16 1 9.5086 -8.4213 -1.7642 17 6 11.0085 -6.9848 -2.2570 18 7 11.7380 -5.9788 -1.8262 19 14 11.1928 -7.5862 -4.0159 20 1 9.8926 -7.4574 -4.7218 21 1 12.2175 -6.7689 -4.7138 22 1 11.6141 -9.0102 -4.0106 23 6 11.2792 -7.2418 0.7249 24 6 11.6578 -8.2794 1.4926 25 6 12.9594 -7.9884 1.9617 26 6 13.2981 -6.7900 1.4531 27 8 12.2788 -6.3452 0.7001 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6959 -2.0072 -0.0005 32 1 4.0096 -0.6535 0.8888 33 1 4.0089 -0.6532 -0.8911 34 1 3.7923 -3.1237 -0.8908 35 1 3.7930 -3.1233 0.8892 36 1 6.0493 -2.0957 0.8890 37 1 6.0494 -2.0958 -0.8909 38 1 5.8327 -4.5656 -0.8916 39 1 5.8326 -4.5663 0.8884 40 1 8.0890 -3.5387 0.8896 41 1 8.0897 -3.5379 -0.8904 42 1 12.3714 -5.5489 -2.4221 43 1 11.0790 -9.1653 1.7084 44 1 13.5651 -8.6088 2.6056 45 1 14.2331 -6.2754 1.6180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:45 Heat of formation + Delta-G solvation = -152.771989 kcal Electronic energy + Delta-G solvation = -26327.340378 eV Core-core repulsion = 22310.195343 eV Total energy + Delta-G solvation = -4017.145035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.03926 -41.00195 -40.57438 -37.72847 -37.04770 -35.31937 -34.92153 -33.56730 -32.57566 -31.63788 -30.42393 -28.44300 -27.41757 -25.15862 -23.57285 -22.38865 -22.21762 -21.34404 -21.24351 -21.07419 -18.98363 -18.26283 -17.98309 -17.71167 -17.29165 -17.02379 -16.92365 -16.70306 -16.47698 -16.25188 -15.89912 -15.06767 -14.84349 -14.59701 -14.41885 -14.09545 -13.60127 -13.52693 -13.38155 -13.36469 -13.34755 -13.06514 -12.97209 -12.91612 -12.83277 -12.78324 -12.23189 -12.18727 -12.02293 -11.95902 -11.82110 -11.42865 -11.26191 -10.98283 -10.93724 -10.77794 -10.49441 -10.10777 -9.07995 -8.22532 -6.53259 1.18957 1.36838 1.38995 1.45918 1.57751 1.64616 1.91697 2.23486 2.32702 2.37872 2.59698 3.08305 3.79706 3.88091 3.94821 3.99169 4.11624 4.23283 4.32319 4.40273 4.47893 4.49546 4.51560 4.57223 4.62598 4.69149 4.72493 4.77273 4.89493 4.96298 5.03040 5.10210 5.13692 5.22258 5.24660 5.39654 5.43750 5.45323 5.50476 5.56750 5.79933 5.90099 6.04724 6.51158 6.59183 6.71971 7.15362 7.27589 7.28069 8.74917 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.002114 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.015333 B =13239.740767 C =14091.880580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.721 5.721 5 C 0.117 3.883 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.096 4.096 9 C -0.108 4.108 10 C 0.445 3.555 11 O -0.560 6.560 12 O -0.353 6.353 13 C 0.277 3.723 14 H 0.057 0.943 15 C -0.577 4.577 16 H 0.060 0.940 17 C 0.041 3.959 18 N -0.846 5.846 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.273 1.273 22 H -0.270 1.270 23 C 0.041 3.959 24 C -0.267 4.267 25 C -0.219 4.219 26 C -0.083 4.083 27 O -0.145 6.145 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.418 0.582 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.269 0.731 43 H 0.145 0.855 44 H 0.170 0.830 45 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.893 7.225 5.163 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.373 5.373 5 C -0.007 4.007 6 C -0.157 4.157 7 C -0.148 4.148 8 C -0.134 4.134 9 C -0.146 4.146 10 C 0.291 3.709 11 O -0.453 6.453 12 O -0.269 6.269 13 C 0.225 3.775 14 H 0.075 0.925 15 C -0.613 4.613 16 H 0.078 0.922 17 C -0.168 4.168 18 N -0.479 5.479 19 Si 0.780 3.220 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.195 1.195 23 C -0.011 4.011 24 C -0.287 4.287 25 C -0.237 4.237 26 C -0.151 4.151 27 O -0.038 6.038 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.255 0.745 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.078 0.922 43 H 0.163 0.837 44 H 0.188 0.812 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.497 8.085 4.974 16.501 hybrid contribution 0.307 -1.220 -0.909 1.552 sum -13.190 6.865 4.065 15.415 Atomic orbital electron populations 1.21898 0.88144 1.06163 1.06175 1.21667 0.92443 0.82875 0.74247 1.90709 1.72337 1.33483 1.52405 1.46106 1.07479 1.09320 1.74440 1.21322 0.79989 0.97831 1.01516 1.21680 0.95614 0.94619 1.03822 1.21445 0.94861 0.95012 1.03504 1.21315 0.91333 0.97852 1.02896 1.21501 0.97918 0.88660 1.06475 1.24469 0.81223 0.93953 0.71301 1.90505 1.57559 1.48649 1.48560 1.86700 1.24739 1.34009 1.81402 1.18598 0.85836 0.78169 0.94933 0.92503 1.21351 1.24677 1.19240 0.96052 0.92229 1.25813 0.93884 0.94421 1.02653 1.70157 1.21028 1.20017 1.36657 0.85650 0.78246 0.78759 0.79301 1.19626 1.19773 1.19527 1.22768 0.90920 0.90409 0.97037 1.21564 0.99527 1.01435 1.06132 1.21902 0.96680 0.98542 1.06625 1.24730 0.94639 0.98117 0.97590 1.84351 1.22106 1.43127 1.54251 0.87238 0.89171 0.87356 0.74506 0.92361 0.92652 0.90536 0.90112 0.90416 0.91061 0.92349 0.91520 0.86400 0.87588 0.92211 0.83749 0.81243 0.75856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.30 71.24 0.73 -0.54 16 2 C 0.50 8.80 7.94 87.66 0.70 9.50 16 3 O -0.61 -17.51 17.10 -3.04 -0.05 -17.56 16 4 N -0.72 -9.71 5.56 -463.06 -2.57 -12.28 16 5 C 0.12 1.92 5.67 86.38 0.49 2.41 16 6 C -0.12 -1.67 5.33 30.59 0.16 -1.51 16 7 C -0.11 -1.91 5.21 30.59 0.16 -1.75 16 8 C -0.10 -2.37 4.50 30.59 0.14 -2.23 16 9 C -0.11 -3.28 5.81 29.85 0.17 -3.11 16 10 C 0.44 19.61 7.92 71.23 0.56 20.18 16 11 O -0.56 -27.05 15.20 21.94 0.33 -26.72 16 12 O -0.35 -18.16 9.25 -48.71 -0.45 -18.61 16 13 C 0.28 14.87 2.58 29.10 0.07 14.95 16 14 H 0.06 3.06 7.15 -2.39 -0.02 3.04 16 15 C -0.58 -32.66 8.91 25.60 0.23 -32.43 16 16 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 17 C 0.04 2.22 5.24 84.65 0.44 2.66 16 18 N -0.85 -46.86 10.62 21.45 0.23 -46.64 16 19 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 C 0.04 2.10 5.59 24.83 0.14 2.24 16 24 C -0.27 -11.78 10.81 22.19 0.24 -11.54 16 25 C -0.22 -8.14 10.91 22.19 0.24 -7.90 16 26 C -0.08 -3.20 12.09 66.97 0.81 -2.39 16 27 O -0.15 -7.20 8.87 0.89 0.01 -7.19 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.42 2.84 8.47 -92.71 -0.79 2.05 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 40 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 42 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.14 5.80 8.06 -2.91 -0.02 5.77 16 44 H 0.17 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.23 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -78.03 387.96 5.02 -73.02 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.20 Total: 22.58 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.30 Total: -11.47 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -2.34 Total: -58.92 kcal Atomic # 8 Polarization: -69.92 SS G_CDS: -0.16 Total: -70.08 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -78.03 5.02 -73.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.755 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds