Wall clock time and date at job start Tue Mar 31 2020 13:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 120.00349 * 2 1 4 4 N 1.34777 * 119.99730 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99827 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47091 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46999 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46999 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46999 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46955 * 180.02562 * 9 8 7 11 11 O 1.20826 * 120.00043 * 0.02562 * 10 9 8 12 12 O 1.34228 * 119.99607 * 179.97438 * 10 9 8 13 13 C 1.45200 * 116.99555 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47626 * 330.00711 * 13 12 10 15 15 C 1.50706 * 109.47265 * 210.00259 * 13 12 10 16 16 H 1.07999 * 119.99834 * 273.48900 * 15 13 12 17 17 C 1.37882 * 119.99906 * 93.48751 * 15 13 12 18 18 N 1.31506 * 119.99733 * 181.27738 * 17 15 13 19 19 Si 1.86802 * 119.99805 * 1.27587 * 17 15 13 20 20 H 1.48497 * 109.46799 * 84.88762 * 19 17 15 21 21 H 1.48501 * 109.46593 * 204.88379 * 19 17 15 22 22 H 1.48497 * 109.47333 * 324.88523 * 19 17 15 23 23 C 1.50698 * 109.46934 * 90.00648 * 13 12 10 24 24 C 1.34523 * 125.78904 * 216.36234 * 23 13 12 25 25 C 1.41377 * 106.83984 * 179.88523 * 24 23 13 26 26 C 1.34520 * 106.84545 * 0.37477 * 25 24 23 27 27 O 1.34298 * 125.79474 * 36.67030 * 23 13 12 28 28 H 1.08997 * 109.46911 * 269.99605 * 1 2 3 29 29 H 1.09000 * 109.46575 * 29.99942 * 1 2 3 30 30 H 1.09001 * 109.47305 * 149.99442 * 1 2 3 31 31 H 0.97002 * 120.00407 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.47083 * 60.00351 * 5 4 2 33 33 H 1.08998 * 109.47837 * 299.99988 * 5 4 2 34 34 H 1.08992 * 109.46959 * 60.00369 * 6 5 4 35 35 H 1.09002 * 109.46860 * 300.00200 * 6 5 4 36 36 H 1.09001 * 109.47303 * 60.00420 * 7 6 5 37 37 H 1.09004 * 109.47050 * 300.00194 * 7 6 5 38 38 H 1.09001 * 109.46750 * 60.00082 * 8 7 6 39 39 H 1.09002 * 109.46860 * 299.99988 * 8 7 6 40 40 H 1.09005 * 109.47002 * 60.00026 * 9 8 7 41 41 H 1.09004 * 109.47050 * 300.00194 * 9 8 7 42 42 H 0.97002 * 120.00106 * 179.97438 * 18 17 15 43 43 H 1.07995 * 126.57450 * 0.02657 * 24 23 13 44 44 H 1.08003 * 126.57708 * 180.16251 * 25 24 23 45 45 H 1.07998 * 125.79192 * 179.74364 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1559 -2.6098 -0.0010 7 6 5.6859 -2.6098 -0.0009 8 6 6.1958 -4.0524 -0.0001 9 6 7.7258 -4.0524 -0.0007 10 6 8.2281 -5.4732 -0.0006 11 8 7.4430 -6.3916 -0.0006 12 8 9.5478 -5.7184 -0.0016 13 6 9.9595 -7.1109 -0.0008 14 1 9.2095 -7.7113 0.5140 15 6 11.2825 -7.2432 0.7086 16 1 12.2040 -7.1028 0.1632 17 6 11.3164 -7.5435 2.0539 18 7 12.4701 -7.6343 2.6784 19 14 9.7235 -7.8214 2.9892 20 1 9.2946 -9.2339 2.8276 21 1 9.9382 -7.5310 4.4296 22 1 8.6715 -6.9203 2.4540 23 6 10.1007 -7.5936 -1.4214 24 6 9.7892 -8.8234 -1.8690 25 6 10.0741 -8.8396 -3.2536 26 6 10.5506 -7.6215 -3.5679 27 8 10.5645 -6.8711 -2.4541 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6959 -2.0073 -0.0013 32 1 4.0096 -0.6537 0.8889 33 1 4.0090 -0.6533 -0.8910 34 1 3.7922 -3.1237 -0.8907 35 1 3.7928 -3.1234 0.8893 36 1 6.0492 -2.0960 0.8891 37 1 6.0492 -2.0960 -0.8909 38 1 5.8325 -4.5666 -0.8899 39 1 5.8324 -4.5657 0.8901 40 1 8.0895 -3.5379 0.8888 41 1 8.0888 -3.5391 -0.8912 42 1 12.4940 -7.8452 3.6249 43 1 9.3947 -9.6405 -1.2834 44 1 9.9388 -9.6715 -3.9289 45 1 10.8685 -7.3014 -4.5491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:48 Heat of formation + Delta-G solvation = -160.163376 kcal Electronic energy + Delta-G solvation = -26323.262030 eV Core-core repulsion = 22305.796480 eV Total energy + Delta-G solvation = -4017.465550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.42812 -41.26526 -40.58990 -37.89488 -37.16147 -35.37453 -35.18454 -33.91703 -32.75446 -32.13342 -30.46591 -28.94611 -27.48678 -24.95040 -23.66629 -22.65141 -22.31994 -21.65241 -21.32633 -21.02727 -19.53673 -18.71736 -18.30945 -17.76395 -17.46069 -17.19566 -17.00882 -16.81753 -16.71264 -16.33743 -15.99154 -15.35603 -14.82252 -14.73303 -14.62185 -14.16574 -13.99737 -13.76139 -13.69496 -13.50913 -13.37187 -13.32947 -13.15409 -12.99987 -12.90165 -12.87187 -12.25657 -12.08275 -12.04819 -11.98366 -11.84895 -11.60338 -11.44964 -11.39548 -11.07449 -10.96411 -10.79715 -10.12079 -9.34854 -8.62288 -6.78109 0.84571 1.18911 1.22534 1.29554 1.37105 1.63437 1.71295 1.96626 2.09678 2.23658 2.32587 2.91874 3.70659 3.79553 3.89698 3.95534 4.00315 4.09715 4.16334 4.19343 4.22663 4.35175 4.45690 4.52370 4.59167 4.61043 4.67496 4.73176 4.84346 4.91276 4.93017 4.98691 5.01036 5.04852 5.08727 5.19397 5.20941 5.36366 5.42491 5.48177 5.64356 5.73230 6.00243 6.29887 6.35172 6.57742 6.90780 6.95160 7.26306 8.51478 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.002322 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.800924 B =12056.994351 C =13288.405849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.721 5.721 5 C 0.117 3.883 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.099 4.099 9 C -0.115 4.115 10 C 0.436 3.564 11 O -0.552 6.552 12 O -0.370 6.370 13 C 0.261 3.739 14 H 0.070 0.930 15 C -0.524 4.524 16 H 0.046 0.954 17 C 0.047 3.953 18 N -0.899 5.899 19 Si 0.933 3.067 20 H -0.254 1.254 21 H -0.259 1.259 22 H -0.265 1.265 23 C -0.018 4.018 24 C -0.232 4.232 25 C -0.215 4.215 26 C -0.057 4.057 27 O -0.191 6.191 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.418 0.582 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.283 0.717 43 H 0.147 0.853 44 H 0.181 0.819 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.326 8.010 -7.408 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.374 5.374 5 C -0.007 4.007 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.137 4.137 9 C -0.152 4.152 10 C 0.282 3.718 11 O -0.444 6.444 12 O -0.287 6.287 13 C 0.209 3.791 14 H 0.088 0.912 15 C -0.560 4.560 16 H 0.064 0.936 17 C -0.158 4.158 18 N -0.535 5.535 19 Si 0.755 3.245 20 H -0.178 1.178 21 H -0.183 1.183 22 H -0.190 1.190 23 C -0.068 4.068 24 C -0.251 4.251 25 C -0.233 4.233 26 C -0.124 4.124 27 O -0.087 6.087 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.255 0.745 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.093 0.907 43 H 0.165 0.835 44 H 0.198 0.802 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -20.873 8.691 -7.213 23.733 hybrid contribution -0.081 -1.022 0.610 1.193 sum -20.954 7.669 -6.603 23.270 Atomic orbital electron populations 1.21900 0.88194 1.06191 1.06135 1.21656 0.92424 0.82885 0.74246 1.90709 1.72319 1.33484 1.52373 1.46108 1.07507 1.09300 1.74472 1.21329 0.79969 0.97833 1.01551 1.21685 0.95693 0.94622 1.03797 1.21451 0.94814 0.94899 1.03689 1.21348 0.91307 0.98050 1.02974 1.21643 0.98086 0.88284 1.07191 1.24855 0.81432 0.94467 0.71033 1.90531 1.57408 1.48640 1.47830 1.86995 1.25173 1.34574 1.81970 1.19113 0.95322 0.78594 0.86060 0.91208 1.20789 0.90465 1.49541 0.95204 0.93559 1.25858 1.00066 0.92270 0.97643 1.69944 1.27036 1.44773 1.11786 0.85952 0.79203 0.80455 0.78938 1.17842 1.18335 1.18950 1.23088 1.01483 0.92802 0.89470 1.21762 1.09039 0.97336 0.96979 1.22105 1.06454 0.99889 0.94895 1.24952 1.05140 0.91366 0.90919 1.84028 1.65660 1.41974 1.17088 0.87337 0.89147 0.87319 0.74522 0.92571 0.92378 0.90237 0.90477 0.90718 0.90404 0.91674 0.92104 0.86498 0.86002 0.90743 0.83489 0.80179 0.73839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.30 71.24 0.73 -0.42 16 2 C 0.50 8.34 7.94 87.66 0.70 9.04 16 3 O -0.61 -16.93 17.10 -3.02 -0.05 -16.98 16 4 N -0.72 -8.91 5.56 -463.05 -2.57 -11.49 16 5 C 0.12 1.75 5.67 86.38 0.49 2.24 16 6 C -0.12 -1.48 5.33 30.60 0.16 -1.32 16 7 C -0.11 -1.67 5.21 30.60 0.16 -1.51 16 8 C -0.10 -2.18 4.50 30.60 0.14 -2.05 16 9 C -0.11 -3.11 5.81 29.85 0.17 -2.93 16 10 C 0.44 17.84 7.85 71.24 0.56 18.40 16 11 O -0.55 -24.82 15.20 21.96 0.33 -24.49 16 12 O -0.37 -17.94 9.84 -48.95 -0.48 -18.42 16 13 C 0.26 13.55 1.96 29.10 0.06 13.61 16 14 H 0.07 3.66 4.56 -2.39 -0.01 3.65 16 15 C -0.52 -30.71 9.23 25.60 0.24 -30.48 16 16 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 17 C 0.05 2.66 5.47 84.66 0.46 3.12 16 18 N -0.90 -53.05 13.96 21.45 0.30 -52.75 16 19 Si 0.93 43.43 26.90 68.60 1.85 45.27 16 20 H -0.25 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.26 -12.47 6.91 99.48 0.69 -11.78 16 23 C -0.02 -0.85 6.17 24.83 0.15 -0.70 16 24 C -0.23 -9.68 10.81 22.19 0.24 -9.44 16 25 C -0.21 -7.06 10.91 22.19 0.24 -6.82 16 26 C -0.06 -1.85 12.09 66.97 0.81 -1.04 16 27 O -0.19 -8.34 10.64 0.24 0.00 -8.34 16 28 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.42 2.39 8.47 -92.71 -0.79 1.60 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 41 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 42 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.15 5.77 8.06 -2.91 -0.02 5.74 16 44 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16 45 H 0.25 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -82.02 388.92 4.88 -77.15 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.19 Total: 20.35 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.31 Total: -10.30 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -2.27 Total: -64.24 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -0.20 Total: -68.23 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.85 Total: 45.27 kcal Total: -82.02 4.88 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.017 kcal (2) G-P(sol) polarization free energy of solvation -82.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds