Wall clock time and date at job start Tue Mar 31 2020 13:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47135 * 2 1 4 4 C 1.34231 * 116.99958 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00115 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99985 * 179.97438 * 4 3 2 7 7 N 1.46905 * 109.47141 * 174.26502 * 6 4 3 8 8 C 1.46897 * 111.00166 * 287.84125 * 7 6 4 9 9 C 1.50700 * 109.47374 * 295.44421 * 8 7 6 10 10 H 1.08001 * 119.99868 * 5.34479 * 9 8 7 11 11 C 1.37880 * 120.00214 * 185.34568 * 9 8 7 12 12 N 1.31514 * 119.99898 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99753 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47068 * 90.00369 * 13 11 9 15 15 H 1.48508 * 109.46764 * 209.99895 * 13 11 9 16 16 H 1.48495 * 109.47613 * 330.00075 * 13 11 9 17 17 C 1.46897 * 111.00021 * 163.88684 * 7 6 4 18 18 C 1.50701 * 109.47131 * 190.00283 * 17 7 6 19 19 C 1.38197 * 119.96904 * 260.01946 * 18 17 7 20 20 C 1.38161 * 120.10547 * 179.97438 * 19 18 17 21 21 C 1.38790 * 120.05181 * 0.02562 * 20 19 18 22 22 O 1.35903 * 120.02616 * 180.02562 * 21 20 19 23 23 C 1.38609 * 119.94878 * 359.75177 * 21 20 19 24 24 C 1.50707 * 120.05419 * 180.25465 * 23 21 20 25 25 C 1.38655 * 119.89064 * 0.48017 * 23 21 20 26 26 O 1.35896 * 120.02789 * 179.79709 * 25 23 21 27 27 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47237 * 300.00297 * 1 2 3 29 29 H 1.09000 * 109.46945 * 60.00396 * 1 2 3 30 30 H 1.09007 * 109.47190 * 239.99687 * 2 1 3 31 31 H 1.08995 * 109.47251 * 120.00268 * 2 1 3 32 32 H 1.09003 * 109.46727 * 54.26851 * 6 4 3 33 33 H 1.08991 * 109.47492 * 294.26857 * 6 4 3 34 34 H 1.09003 * 109.47381 * 55.44116 * 8 7 6 35 35 H 1.08996 * 109.47283 * 175.44217 * 8 7 6 36 36 H 0.96996 * 119.99772 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47361 * 69.99933 * 17 7 6 38 38 H 1.09003 * 109.47141 * 310.00465 * 17 7 6 39 39 H 1.07995 * 119.94749 * 359.97438 * 19 18 17 40 40 H 1.07995 * 119.97088 * 180.02562 * 20 19 18 41 41 H 0.96701 * 113.99891 * 89.99999 * 22 21 20 42 42 H 1.09002 * 109.46700 * 270.22515 * 24 23 21 43 43 H 1.08993 * 109.47406 * 30.22477 * 24 23 21 44 44 H 1.08999 * 109.46808 * 150.23323 * 24 23 21 45 45 H 0.96703 * 113.99705 * 269.72299 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3813 2.8632 0.1391 8 6 5.7609 2.4679 1.5020 9 6 5.3306 3.5368 2.4734 10 1 4.7502 4.3792 2.1270 11 6 5.6777 3.4392 3.8042 12 7 6.3840 2.4131 4.2260 13 14 5.1448 4.7645 5.0079 14 1 3.8229 4.4082 5.5831 15 1 6.1463 4.8736 6.0991 16 1 5.0418 6.0651 4.2987 17 6 6.0110 4.1367 -0.2343 18 6 7.5046 3.9534 -0.3171 19 6 8.3086 4.3547 0.7328 20 6 9.6781 4.1875 0.6601 21 6 10.2496 3.6162 -0.4683 22 8 11.5968 3.4514 -0.5390 23 6 9.4449 3.2086 -1.5206 24 6 10.0625 2.5828 -2.7446 25 6 8.0712 3.3819 -1.4474 26 8 7.2799 2.9871 -2.4793 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.5046 3.5029 0.8337 33 1 3.6698 3.4340 -0.9372 34 1 5.2725 1.5274 1.7570 35 1 6.8422 2.3421 1.5560 36 1 6.6279 2.3443 5.1623 37 1 5.7787 4.8912 0.5173 38 1 5.6304 4.4599 -1.2032 39 1 7.8657 4.7998 1.6115 40 1 10.3043 4.5015 1.4820 41 1 11.9079 2.6033 -0.1940 42 1 10.3058 3.3616 -3.4673 43 1 10.9718 2.0524 -2.4620 44 1 9.3563 1.8818 -3.1898 45 1 7.1286 3.6732 -3.1437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140748007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:38 Heat of formation + Delta-G solvation = -141.910324 kcal Electronic energy + Delta-G solvation = -28289.694565 eV Core-core repulsion = 24273.020527 eV Total energy + Delta-G solvation = -4016.674038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05542 -39.76578 -37.69640 -36.87678 -35.77631 -35.03872 -32.56942 -32.10318 -31.54324 -29.89030 -27.88070 -26.62215 -26.25583 -24.29310 -23.06830 -22.03692 -21.36106 -20.39833 -19.54315 -18.53742 -17.24633 -17.03061 -16.55293 -16.23264 -16.12378 -15.47857 -14.98973 -14.83272 -14.70562 -14.29265 -14.11390 -13.94924 -13.37893 -13.04571 -12.89563 -12.82757 -12.64529 -12.43909 -12.35672 -12.17089 -11.84247 -11.54602 -11.34857 -11.22919 -11.15328 -11.02982 -10.94852 -10.67534 -10.44757 -10.33285 -10.21699 -10.12795 -9.91516 -9.71136 -9.59061 -8.46436 -8.15598 -8.01823 -7.23538 -6.06022 -4.16953 1.55727 1.67304 2.94126 3.11451 3.22457 3.30578 3.31115 3.88203 4.31331 4.34652 4.80995 5.05017 5.07584 5.12138 5.13690 5.23398 5.23655 5.31436 5.45043 5.49943 5.72188 5.76387 5.79870 5.85999 5.87842 5.89522 6.03328 6.04422 6.06656 6.10788 6.20694 6.41826 6.51620 6.71293 6.76365 6.94575 7.03467 7.12581 7.20033 7.52717 7.84256 7.90966 7.91728 8.04942 8.16619 8.22439 8.51954 8.93851 9.49303 10.98359 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.004950 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.775481 B = 5655.251431 C = 7981.324074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.485 6.485 6 C 0.070 3.930 7 N -0.516 5.516 8 C 0.185 3.815 9 C -0.557 4.557 10 H 0.057 0.943 11 C 0.070 3.930 12 N -0.882 5.882 13 Si 0.883 3.117 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.109 3.891 18 C -0.087 4.087 19 C -0.063 4.063 20 C -0.152 4.152 21 C 0.105 3.895 22 O -0.499 6.499 23 C -0.151 4.151 24 C -0.098 4.098 25 C 0.136 3.864 26 O -0.480 6.480 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.033 0.967 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.385 0.615 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 1.800 -11.549 11.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.306 3.694 5 O -0.370 6.370 6 C -0.060 4.060 7 N -0.240 5.240 8 C 0.060 3.940 9 C -0.596 4.596 10 H 0.075 0.925 11 C -0.134 4.134 12 N -0.520 5.520 13 Si 0.711 3.289 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.018 4.018 18 C -0.088 4.088 19 C -0.082 4.082 20 C -0.171 4.171 21 C 0.061 3.939 22 O -0.309 6.309 23 C -0.152 4.152 24 C -0.155 4.155 25 C 0.090 3.910 26 O -0.288 6.288 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.240 0.760 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.573 1.030 -11.662 11.721 hybrid contribution -0.462 0.955 1.555 1.882 sum -1.034 1.984 -10.107 10.352 Atomic orbital electron populations 1.21778 0.93217 1.02450 1.03253 1.22867 0.94784 0.81218 1.02314 1.86477 1.25687 1.31520 1.85060 1.23816 0.79704 0.93339 0.72509 1.90638 1.59976 1.42890 1.43461 1.21398 0.91648 0.89725 1.03191 1.62217 1.03456 1.27996 1.30364 1.19864 0.97873 0.95769 0.80521 1.21708 1.35360 1.08564 0.93953 0.92493 1.24919 0.94789 0.95440 0.98209 1.69962 1.37132 1.29094 1.15831 0.86739 0.78574 0.82324 0.81259 1.20645 1.21128 1.19840 1.20690 0.89451 0.92169 0.99477 1.20099 0.96267 0.98458 0.94024 1.21042 0.92149 0.97300 0.97677 1.21361 0.95501 1.02879 0.97343 1.18046 0.82341 1.00207 0.93345 1.84781 1.18551 1.41767 1.85806 1.20334 0.92878 1.03667 0.98319 1.20450 1.00351 1.00046 0.94651 1.17859 0.87336 0.96638 0.89130 1.84912 1.69256 1.40432 1.34185 0.90716 0.91565 0.91777 0.91728 0.91472 0.89714 0.88805 0.94859 0.93994 0.92772 0.92423 0.92029 0.84316 0.85741 0.76007 0.91961 0.91976 0.91189 0.76839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.42 10.22 -39.26 -0.40 -6.82 16 4 C 0.47 9.37 7.54 36.01 0.27 9.64 16 5 O -0.49 -11.40 14.91 -18.74 -0.28 -11.68 16 6 C 0.07 1.31 5.42 -4.97 -0.03 1.29 16 7 N -0.52 -10.98 4.29 -238.96 -1.03 -12.01 16 8 C 0.18 4.74 4.53 -4.98 -0.02 4.72 16 9 C -0.56 -14.38 7.32 -34.44 -0.25 -14.64 16 10 H 0.06 1.41 5.97 -52.49 -0.31 1.10 16 11 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 12 N -0.88 -25.38 13.29 55.43 0.74 -24.65 16 13 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C 0.11 2.00 4.53 -4.98 -0.02 1.98 16 18 C -0.09 -1.60 4.59 -104.45 -0.48 -2.08 16 19 C -0.06 -1.17 8.73 -39.62 -0.35 -1.52 16 20 C -0.15 -2.59 9.98 -39.41 -0.39 -2.98 16 21 C 0.11 1.68 6.67 -39.24 -0.26 1.42 16 22 O -0.50 -6.85 12.55 -19.44 -0.24 -7.09 16 23 C -0.15 -2.40 5.91 -104.33 -0.62 -3.01 16 24 C -0.10 -1.27 9.57 36.01 0.34 -0.93 16 25 C 0.14 2.30 6.65 -39.24 -0.26 2.04 16 26 O -0.48 -7.33 11.77 -19.41 -0.23 -7.56 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 32 H 0.09 1.65 6.40 -51.93 -0.33 1.32 16 33 H 0.09 1.43 7.80 -51.93 -0.41 1.03 16 34 H 0.03 0.98 6.59 -51.93 -0.34 0.63 16 35 H 0.04 1.18 6.68 -51.93 -0.35 0.84 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.06 1.11 6.22 -51.93 -0.32 0.78 16 38 H 0.06 0.94 7.57 -51.93 -0.39 0.55 16 39 H 0.14 2.74 8.03 -52.49 -0.42 2.32 16 40 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 41 H 0.38 3.69 9.06 45.56 0.41 4.10 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.74 7.54 -51.93 -0.39 0.35 16 44 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 45 H 0.38 3.78 9.06 45.56 0.41 4.19 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -33.75 374.93 -7.29 -41.04 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.93 Total: 9.97 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.55 Total: -2.35 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.29 Total: -36.65 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.15 Total: -33.15 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.75 -7.29 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140748007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.869 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds