Wall clock time and date at job start Tue Mar 31 2020 13:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34707 * 117.00201 * 2 1 4 4 O 1.21470 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.47748 * 120.00075 * 180.02562 * 3 2 1 6 6 C 1.39586 * 120.09871 * 6.01726 * 5 3 2 7 7 C 1.38475 * 119.89917 * 180.02562 * 6 5 3 8 8 O 1.35912 * 119.94735 * 179.97438 * 7 6 5 9 9 C 1.42903 * 116.99937 * 180.02562 * 8 7 6 10 10 C 1.38760 * 120.10090 * 359.74495 * 7 6 5 11 11 C 1.38711 * 120.19532 * 0.51066 * 10 7 6 12 12 O 1.35909 * 119.94910 * 179.76206 * 11 10 7 13 13 C 1.42901 * 117.00346 * 359.72780 * 12 11 10 14 14 C 1.38523 * 120.10048 * 359.48952 * 11 10 7 15 15 C 1.50704 * 120.04907 * 180.27781 * 14 11 10 16 16 N 1.46896 * 109.47069 * 98.08719 * 15 14 11 17 17 C 1.46903 * 110.99954 * 293.94786 * 16 15 14 18 18 C 1.46901 * 110.99984 * 170.00099 * 16 15 14 19 19 C 1.50704 * 109.47156 * 189.99944 * 18 16 15 20 20 H 1.07996 * 119.99689 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99654 * 179.97438 * 19 18 16 22 22 N 1.31506 * 120.00279 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99586 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47071 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47059 * 119.99511 * 23 21 19 26 26 H 1.48498 * 109.47142 * 239.99952 * 23 21 19 27 27 H 1.09004 * 109.46444 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.47266 * 59.99266 * 1 2 3 29 29 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.04770 * 359.97438 * 6 5 3 31 31 H 1.08995 * 109.47361 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.46631 * 300.00486 * 9 8 7 33 33 H 1.08999 * 109.47484 * 59.99723 * 9 8 7 34 34 H 1.07995 * 119.90038 * 180.27360 * 10 7 6 35 35 H 1.08999 * 109.47603 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47038 * 59.99427 * 13 12 11 37 37 H 1.09007 * 109.46892 * 299.99702 * 13 12 11 38 38 H 1.09005 * 109.46722 * 218.08582 * 15 14 11 39 39 H 1.08994 * 109.47211 * 338.08325 * 15 14 11 40 40 H 1.09005 * 109.46670 * 60.00328 * 17 16 15 41 41 H 1.08998 * 109.47133 * 180.02562 * 17 16 15 42 42 H 1.08996 * 109.47385 * 300.00533 * 17 16 15 43 43 H 1.09003 * 109.46618 * 309.99648 * 18 16 15 44 44 H 1.08999 * 109.47272 * 69.99529 * 18 16 15 45 45 H 0.97007 * 120.00124 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5391 1.2775 -0.0006 6 6 4.3009 0.1148 -0.1277 7 6 5.6835 0.1920 -0.1272 8 8 6.4263 -0.9395 -0.2504 9 6 7.8471 -0.7871 -0.2416 10 6 6.3118 1.4233 -0.0059 11 6 5.5587 2.5807 0.1260 12 8 6.1793 3.7835 0.2493 13 6 7.6083 3.7802 0.2411 14 6 4.1752 2.5131 0.1265 15 6 3.3581 3.7720 0.2636 16 7 2.9214 4.2194 -1.0657 17 6 4.0683 4.6347 -1.8844 18 6 1.9324 5.3003 -0.9587 19 6 1.3284 5.5645 -2.3139 20 1 1.6477 4.9876 -3.1691 21 6 0.3682 6.5429 -2.4617 22 7 -0.0210 7.2451 -1.4201 23 14 -0.3799 6.8709 -4.1417 24 1 0.2245 5.9530 -5.1405 25 1 -1.8462 6.6436 -4.0835 26 1 -0.1122 8.2771 -4.5368 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.8128 -0.8436 -0.2255 31 1 8.3181 -1.7643 -0.3476 32 1 8.1489 -0.1468 -1.0706 33 1 8.1581 -0.3336 0.6995 34 1 7.3902 1.4802 -0.0103 35 1 7.9747 4.8014 0.3462 36 1 7.9652 3.3616 -0.6999 37 1 7.9750 3.1751 1.0703 38 1 2.4850 3.5725 0.8849 39 1 3.9643 4.5498 0.7278 40 1 4.7515 3.7939 -2.0056 41 1 3.7167 4.9616 -2.8630 42 1 4.5876 5.4567 -1.3921 43 1 1.1472 5.0065 -0.2620 44 1 2.4204 6.2048 -0.5957 45 1 -0.6968 7.9331 -1.5241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141697821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:18 Heat of formation + Delta-G solvation = -132.313555 kcal Electronic energy + Delta-G solvation = -28636.267065 eV Core-core repulsion = 24620.009174 eV Total energy + Delta-G solvation = -4016.257891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07726 -41.00110 -39.92432 -38.54514 -37.33823 -37.13874 -34.68612 -32.21493 -31.92046 -29.41075 -28.96914 -28.56695 -28.11346 -27.12894 -25.54181 -24.58645 -23.05395 -22.16190 -21.44008 -19.88842 -18.52832 -18.43016 -17.87640 -17.45521 -17.27118 -16.98575 -16.89616 -16.73828 -16.44481 -16.38364 -15.78668 -15.68401 -15.58427 -14.89849 -14.46613 -14.33744 -14.18858 -13.82274 -13.50177 -13.43511 -13.25753 -13.10790 -12.89155 -12.86901 -12.65684 -12.59794 -12.43553 -12.33679 -12.25312 -12.14173 -11.88931 -11.68498 -11.54448 -11.23092 -11.03705 -10.60444 -9.84081 -9.07990 -8.84771 -8.17404 -6.27536 -0.41926 0.29665 1.38159 1.40187 1.53914 1.55494 1.61573 2.26180 2.37815 2.40785 2.60281 3.13746 3.51166 3.62074 3.78370 3.88080 3.93859 4.10274 4.27579 4.36275 4.38663 4.39429 4.40350 4.42192 4.44423 4.56228 4.57450 4.72751 4.74853 4.77347 4.79503 4.82068 4.91923 5.03256 5.08226 5.18374 5.27612 5.29677 5.36845 5.51972 5.66501 6.09523 6.15756 6.40895 6.45989 6.69318 6.84707 6.88711 7.41030 8.94191 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.004211 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.023909 B = 6647.252704 C = 8085.159757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.493 3.507 4 O -0.490 6.490 5 C -0.043 4.043 6 C -0.135 4.135 7 C 0.157 3.843 8 O -0.320 6.320 9 C 0.012 3.988 10 C -0.252 4.252 11 C 0.161 3.839 12 O -0.328 6.328 13 C 0.014 3.986 14 C -0.100 4.100 15 C 0.107 3.893 16 N -0.525 5.525 17 C 0.054 3.946 18 C 0.220 3.780 19 C -0.516 4.516 20 H 0.058 0.942 21 C -0.002 4.002 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.141 0.859 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.175 0.825 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.009 0.991 43 H -0.003 1.003 44 H -0.045 1.045 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.202 -18.702 4.378 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.337 3.663 4 O -0.377 6.377 5 C -0.044 4.044 6 C -0.154 4.154 7 C 0.111 3.889 8 O -0.233 6.233 9 C -0.082 4.082 10 C -0.272 4.272 11 C 0.114 3.886 12 O -0.241 6.241 13 C -0.080 4.080 14 C -0.102 4.102 15 C -0.020 4.020 16 N -0.249 5.249 17 C -0.094 4.094 18 C 0.094 3.906 19 C -0.554 4.554 20 H 0.077 0.923 21 C -0.199 4.199 22 N -0.578 5.578 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.200 1.200 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.159 0.841 30 H 0.175 0.825 31 H 0.142 0.858 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.192 0.808 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.015 0.985 44 H -0.028 1.028 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.500 -18.662 4.197 25.926 hybrid contribution -0.286 1.544 -0.084 1.572 sum 17.214 -17.118 4.112 24.623 Atomic orbital electron populations 1.23505 0.74695 1.05664 1.02125 1.86487 1.24775 1.31528 1.84521 1.21292 0.89399 0.81790 0.73815 1.91025 1.66977 1.36154 1.43568 1.18333 0.88874 0.93052 1.04183 1.20555 0.91117 0.98429 1.05335 1.18468 0.90549 0.85516 0.94395 1.86109 1.21163 1.28549 1.87485 1.23470 0.76116 1.05957 1.02619 1.21632 1.02126 0.90634 1.12765 1.18263 0.90217 0.85322 0.94761 1.86197 1.23841 1.26690 1.87357 1.23452 0.75917 1.05761 1.02848 1.19072 0.91436 0.94107 1.05557 1.20769 0.96737 0.92597 0.91895 1.61960 1.12325 1.38106 1.12500 1.22075 0.91946 0.97805 0.97624 1.19230 0.89384 0.85689 0.96288 1.21446 1.21586 1.17609 0.94793 0.92340 1.25955 0.97051 0.95627 1.01261 1.70120 1.32013 1.23824 1.31806 0.85296 0.78035 0.78085 0.78933 1.18845 1.20320 1.19991 0.92328 0.93053 0.84073 0.82500 0.85769 0.91500 0.91188 0.80824 0.86835 0.91023 0.90578 0.91015 0.95866 0.91929 0.92881 0.97227 0.98484 1.02759 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.56 113.37 1.20 2.03 16 2 O -0.36 -10.85 9.83 -56.17 -0.55 -11.40 16 3 C 0.49 18.51 7.83 70.34 0.55 19.06 16 4 O -0.49 -22.80 12.57 19.93 0.25 -22.55 16 5 C -0.04 -1.44 5.87 -20.12 -0.12 -1.56 16 6 C -0.14 -3.62 9.55 22.65 0.22 -3.40 16 7 C 0.16 3.54 6.68 22.45 0.15 3.69 16 8 O -0.32 -5.81 10.49 -92.56 -0.97 -6.79 16 9 C 0.01 0.11 9.81 113.37 1.11 1.22 16 10 C -0.25 -5.32 8.02 22.51 0.18 -5.14 16 11 C 0.16 4.62 5.62 22.45 0.13 4.75 16 12 O -0.33 -9.01 8.88 -92.53 -0.82 -9.83 16 13 C 0.01 0.21 9.81 113.37 1.11 1.32 16 14 C -0.10 -3.60 4.68 -19.48 -0.09 -3.69 16 15 C 0.11 4.80 3.96 85.56 0.34 5.14 16 16 N -0.53 -26.63 4.00 -931.64 -3.72 -30.35 16 17 C 0.05 2.42 8.65 127.69 1.10 3.53 16 18 C 0.22 13.35 4.72 85.56 0.40 13.75 16 19 C -0.52 -32.14 8.46 25.60 0.22 -31.92 16 20 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 21 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 22 N -0.94 -60.33 13.29 21.45 0.28 -60.05 16 23 Si 0.97 47.24 29.54 68.60 2.03 49.26 16 24 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.16 3.70 7.62 -2.91 -0.02 3.68 16 31 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.47 7.64 -2.38 -0.02 0.45 16 33 H 0.07 0.43 7.67 -2.39 -0.02 0.41 16 34 H 0.17 2.24 4.49 -2.91 -0.01 2.23 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 0.83 7.64 -2.39 -0.02 0.82 16 37 H 0.08 0.79 7.67 -2.38 -0.02 0.77 16 38 H 0.07 3.50 5.75 -2.38 -0.01 3.48 16 39 H 0.02 1.05 7.27 -2.39 -0.02 1.03 16 40 H 0.06 2.46 6.49 -2.38 -0.02 2.45 16 41 H 0.05 2.51 6.76 -2.39 -0.02 2.50 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.00 -0.20 7.93 -2.39 -0.02 -0.22 16 44 H -0.05 -2.93 8.12 -2.39 -0.02 -2.95 16 45 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -82.48 368.92 4.46 -78.02 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.00 Total: 4.56 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 6.96 Total: 9.14 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -3.44 Total: -90.40 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -2.09 Total: -50.58 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -82.48 4.46 -78.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141697821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.296 kcal (2) G-P(sol) polarization free energy of solvation -82.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds