Wall clock time and date at job start Tue Mar 31 2020 14:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35999 * 116.99693 * 2 1 4 4 C 1.38565 * 120.07521 * 0.27215 * 3 2 1 5 5 C 1.38240 * 120.00002 * 180.25308 * 4 3 2 6 6 C 1.50696 * 119.92626 * 179.76918 * 5 4 3 7 7 C 1.53001 * 109.47137 * 269.72639 * 6 5 4 8 8 H 1.08999 * 109.47164 * 54.99980 * 7 6 5 9 9 O 1.42903 * 109.47171 * 294.99715 * 7 6 5 10 10 C 1.50707 * 109.47316 * 175.00399 * 7 6 5 11 11 O 1.21277 * 120.00254 * 114.99987 * 10 7 6 12 12 N 1.34778 * 119.99571 * 294.99727 * 10 7 6 13 13 C 1.46492 * 119.99821 * 179.97438 * 12 10 7 14 14 C 1.53003 * 109.47320 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47412 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47204 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00230 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99989 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00313 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00065 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47035 * 120.00156 * 20 18 16 23 23 H 1.48501 * 109.47145 * 240.00397 * 20 18 16 24 24 C 1.38253 * 120.14558 * 359.49367 * 5 4 3 25 25 C 1.38244 * 120.14583 * 0.23111 * 24 5 4 26 26 C 1.38565 * 119.99883 * 0.02699 * 25 24 5 27 27 O 1.35993 * 120.06931 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47138 * 60.00539 * 1 2 3 29 29 H 1.08997 * 109.46652 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46939 * 300.00141 * 1 2 3 31 31 H 1.07998 * 119.99913 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.47183 * 149.72725 * 6 5 4 33 33 H 1.08997 * 109.47623 * 29.72421 * 6 5 4 34 34 H 0.96700 * 114.00311 * 300.00378 * 9 7 6 35 35 H 0.97003 * 119.99661 * 0.02562 * 12 10 7 36 36 H 1.09007 * 109.47174 * 299.99832 * 13 12 10 37 37 H 1.08998 * 109.47294 * 60.00216 * 13 12 10 38 38 H 1.09007 * 109.46570 * 299.99847 * 14 13 12 39 39 H 1.08998 * 109.47051 * 59.99712 * 14 13 12 40 40 H 1.09007 * 109.47424 * 299.99661 * 15 14 13 41 41 H 1.08998 * 109.47416 * 59.99729 * 15 14 13 42 42 H 0.97000 * 120.00088 * 179.97438 * 19 18 16 43 43 H 1.08003 * 119.92983 * 180.24899 * 24 5 4 44 44 H 1.07999 * 119.99924 * 180.02562 * 25 24 5 45 45 H 0.96699 * 114.00441 * 89.99723 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0057 5 6 1.9223 3.6058 0.0004 6 6 1.1015 4.8696 0.0013 7 6 0.8232 5.2981 -1.4408 8 1 0.3538 4.4753 -1.9801 9 8 2.0529 5.6465 -2.0800 10 6 -0.0987 6.4903 -1.4417 11 8 0.2934 7.5597 -1.8581 12 7 -1.3589 6.3679 -0.9799 13 6 -2.2549 7.5269 -0.9802 14 6 -3.6147 7.1205 -0.4087 15 6 -4.5506 8.3308 -0.4096 16 6 -5.8902 7.9303 0.1527 17 1 -6.0572 6.9143 0.4785 18 6 -6.9024 8.8613 0.2521 19 7 -6.6990 10.0987 -0.1442 20 14 -8.5627 8.3651 0.9498 21 1 -8.5341 6.9274 1.3205 22 1 -8.8569 9.1809 2.1552 23 1 -9.6167 8.5925 -0.0713 24 6 3.3028 3.6799 0.0000 25 6 4.0602 2.5234 0.0000 26 6 3.4359 1.2864 0.0000 27 8 4.1795 0.1478 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2146 2.3197 0.0106 32 1 1.6502 5.6588 0.5154 33 1 0.1574 4.6894 0.5153 34 1 2.5262 6.3734 -1.6526 35 1 -1.6723 5.5126 -0.6465 36 1 -1.8251 8.3186 -0.3663 37 1 -2.3824 7.8873 -2.0009 38 1 -4.0447 6.3287 -1.0223 39 1 -3.4869 6.7604 0.6121 40 1 -4.1210 9.1230 0.2036 41 1 -4.6784 8.6905 -1.4306 42 1 -7.4112 10.7536 -0.0746 43 1 3.7907 4.6435 -0.0001 44 1 5.1385 2.5841 0.0001 45 1 4.3943 -0.1813 0.8841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143603145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:07 Heat of formation + Delta-G solvation = -162.380768 kcal Electronic energy + Delta-G solvation = -26380.638321 eV Core-core repulsion = 22363.076618 eV Total energy + Delta-G solvation = -4017.561703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87900 -40.00996 -38.22218 -37.56921 -36.41689 -35.39990 -33.51246 -32.55169 -31.26297 -30.55009 -29.06617 -27.70259 -26.61194 -24.70767 -22.95406 -22.71714 -21.79274 -20.86013 -20.22217 -18.97897 -18.11620 -17.51588 -16.97996 -16.56425 -16.37185 -16.23618 -15.82019 -15.57250 -15.24893 -14.89493 -14.69788 -14.49498 -14.38040 -14.20206 -13.99763 -13.58019 -12.79833 -12.71395 -12.49606 -12.36061 -12.13387 -11.93219 -11.88529 -11.75495 -11.68272 -11.45658 -10.98920 -10.95717 -10.91995 -10.80566 -10.62432 -9.95052 -9.84966 -9.41319 -9.17363 -9.07300 -8.92595 -8.42875 -8.42262 -6.07112 -4.10528 0.78820 1.02606 2.53264 2.85870 3.12669 3.25920 3.27729 3.33755 3.36778 3.84041 3.98641 4.32484 4.38667 4.39561 4.57476 4.61784 4.69583 4.79443 4.81163 4.90173 4.99390 5.12891 5.21288 5.27058 5.28791 5.36759 5.54931 5.61974 5.68170 5.77314 5.91622 6.06641 6.18160 6.31144 6.34363 6.50539 6.71682 6.83588 6.91827 7.24888 7.39400 7.55551 7.57445 7.69120 7.91148 8.18895 8.32119 8.96287 9.54028 11.04132 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002165 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.321781 B =12931.548488 C =14393.731578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.105 3.895 4 C -0.192 4.192 5 C -0.043 4.043 6 C -0.111 4.111 7 C 0.100 3.900 8 H 0.123 0.877 9 O -0.532 6.532 10 C 0.478 3.522 11 O -0.534 6.534 12 N -0.721 5.721 13 C 0.114 3.886 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.523 4.523 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.123 4.123 25 C -0.105 4.105 26 C 0.069 3.931 27 O -0.488 6.488 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.382 0.618 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.129 0.871 44 H 0.136 0.864 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.596 -19.163 3.077 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.059 3.941 4 C -0.211 4.211 5 C -0.043 4.043 6 C -0.149 4.149 7 C 0.037 3.963 8 H 0.140 0.860 9 O -0.337 6.337 10 C 0.263 3.737 11 O -0.411 6.411 12 N -0.373 5.373 13 C -0.008 4.008 14 C -0.158 4.158 15 C -0.015 4.015 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.141 4.141 25 C -0.123 4.123 26 C 0.024 3.976 27 O -0.297 6.297 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 20.664 -18.826 1.735 28.008 hybrid contribution -1.337 -0.062 1.418 1.950 sum 19.327 -18.889 3.153 27.207 Atomic orbital electron populations 1.23129 0.78184 1.04230 1.01612 1.86149 1.21433 1.26138 1.88552 1.19413 0.91738 0.84888 0.98105 1.21060 1.00220 0.91297 1.08488 1.19421 0.93800 0.93469 0.97636 1.21309 1.01224 0.95835 0.96508 1.21827 0.85814 0.95013 0.93662 0.85980 1.86617 1.33144 1.56861 1.57059 1.21494 0.83313 0.90861 0.78046 1.90729 1.75621 1.28618 1.46166 1.46270 1.12639 1.14674 1.63764 1.21693 0.90125 0.87207 1.01800 1.21890 0.92778 1.01701 0.99476 1.19037 0.93025 0.91736 0.97662 1.21221 0.96891 0.96217 1.41757 0.92606 1.25041 0.98952 0.94979 0.95545 1.69973 1.33140 1.02689 1.47390 0.86524 0.84015 0.78589 0.78776 1.19775 1.20977 1.20967 1.20826 0.92855 0.98284 1.02169 1.21243 1.00609 0.90798 0.99673 1.17762 0.86174 0.86642 1.07060 1.84902 1.71757 1.39820 1.33176 0.92382 0.88060 0.92437 0.84825 0.89368 0.89075 0.76969 0.76826 0.91650 0.91644 0.92700 0.92707 0.96266 0.96250 0.92933 0.85302 0.84651 0.76043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.96 10.28 -34.24 -0.35 -3.31 16 3 C 0.10 1.01 6.70 -39.12 -0.26 0.75 16 4 C -0.19 -1.60 8.69 -39.46 -0.34 -1.94 16 5 C -0.04 -0.35 4.97 -104.62 -0.52 -0.87 16 6 C -0.11 -0.82 5.00 -27.88 -0.14 -0.96 16 7 C 0.10 0.96 3.37 -27.88 -0.09 0.87 16 8 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 9 O -0.53 -5.77 12.49 -55.09 -0.69 -6.46 16 10 C 0.48 6.33 7.17 -10.98 -0.08 6.25 16 11 O -0.53 -9.42 16.32 -14.30 -0.23 -9.65 16 12 N -0.72 -9.14 5.46 -60.29 -0.33 -9.47 16 13 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 14 C -0.12 -2.22 5.27 -26.73 -0.14 -2.37 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.12 -0.98 9.39 -39.57 -0.37 -1.35 16 25 C -0.10 -0.86 9.98 -39.46 -0.39 -1.26 16 26 C 0.07 0.66 6.72 -39.12 -0.26 0.40 16 27 O -0.49 -4.39 13.29 -34.22 -0.45 -4.84 16 28 H 0.06 0.31 7.68 -51.93 -0.40 -0.09 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.13 0.86 6.30 -52.49 -0.33 0.52 16 32 H 0.09 0.61 8.08 -51.93 -0.42 0.20 16 33 H 0.09 0.57 7.71 -51.93 -0.40 0.17 16 34 H 0.38 3.26 8.79 45.56 0.40 3.66 16 35 H 0.40 3.80 8.18 -40.82 -0.33 3.46 16 36 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 44 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.38 1.66 9.06 45.56 0.41 2.07 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -35.99 385.00 -7.96 -43.95 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.24 Total: 3.72 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.19 Total: -10.14 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.41 Total: -35.15 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.73 Total: -24.26 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.99 -7.96 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143603145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.432 kcal (2) G-P(sol) polarization free energy of solvation -35.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds