Wall clock time and date at job start Tue Mar 31 2020 14:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48508 * 109.46787 * 239.99771 * 3 2 1 5 5 H 1.48490 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46996 * 120.00295 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42156 * 108.75863 * 91.39671 * 12 11 10 14 14 C 1.38014 * 119.43607 * 272.77134 * 13 12 11 15 15 H 1.08996 * 109.47323 * 303.42857 * 14 13 12 16 16 C 1.52998 * 109.46698 * 183.43133 * 14 13 12 17 17 N 1.46509 * 109.47216 * 65.00139 * 16 14 13 18 18 C 1.34775 * 120.00003 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00205 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99563 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47311 * 179.97438 * 21 20 18 23 23 C 1.41382 * 126.80371 * 124.99672 * 22 21 20 24 24 C 1.35445 * 103.98798 * 180.02562 * 23 22 21 25 25 O 1.34039 * 106.44518 * 0.02562 * 24 23 22 26 26 N 1.20923 * 111.56832 * 359.70899 * 25 24 23 27 27 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 28 28 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 30 30 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 31 31 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 32 32 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 33 33 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 34 34 H 1.08994 * 109.58682 * 211.17827 * 12 11 10 35 35 H 1.09002 * 109.47542 * 184.99994 * 16 14 13 36 36 H 1.09006 * 109.47603 * 305.00184 * 16 14 13 37 37 H 0.96996 * 119.99534 * 359.97438 * 17 16 14 38 38 H 1.08994 * 109.46728 * 299.99244 * 20 18 17 39 39 H 1.08991 * 109.47157 * 59.99751 * 20 18 17 40 40 H 1.09002 * 109.47542 * 299.99797 * 21 20 18 41 41 H 1.09006 * 109.47603 * 59.99987 * 21 20 18 42 42 H 1.08003 * 128.00531 * 359.96826 * 23 22 21 43 43 H 1.08001 * 126.77877 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46167 * 149.28169 * 27 9 7 45 45 H 1.09004 * 109.45622 * 29.32335 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2341 -4.6209 -1.9295 14 6 2.8931 -4.2226 -0.7842 15 1 3.6429 -3.4735 -1.0383 16 6 3.5770 -5.4316 -0.1428 17 7 4.6233 -5.9325 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 6 7.1234 -8.7243 -0.9575 22 6 8.1996 -9.2396 -1.8780 23 6 9.5640 -9.4319 -1.5616 24 6 10.1033 -9.9034 -2.7112 25 8 9.1034 -9.9661 -3.6016 26 7 8.0562 -9.5997 -3.1207 27 6 1.8755 -3.6165 0.2126 28 1 -0.4851 0.8399 -0.0004 29 1 -0.7245 -2.3819 -0.5672 30 1 0.1607 -1.3474 -1.7085 31 1 -0.4845 -3.1866 -3.0413 32 1 -0.1723 -4.3602 -1.7405 33 1 2.1329 -2.7067 -2.6870 34 1 1.5435 -3.9957 -3.7680 35 1 4.0224 -5.1357 0.8071 36 1 2.8405 -6.2164 0.0302 37 1 4.7832 -5.4960 -1.8890 38 1 5.9945 -7.8107 -2.5489 39 1 7.1761 -6.7306 -1.7709 40 1 7.5684 -8.4286 -0.0074 41 1 6.3869 -9.5092 -0.7850 42 1 10.0614 -9.2452 -0.6213 43 1 11.1354 -10.1744 -2.8778 44 1 1.0509 -4.3142 0.3591 45 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149967169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:36 Heat of formation + Delta-G solvation = -1.302510 kcal Electronic energy + Delta-G solvation = -27026.771217 eV Core-core repulsion = 23048.487142 eV Total energy + Delta-G solvation = -3978.284075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.24063 -39.80876 -38.80928 -35.69366 -35.23208 -34.59847 -32.55995 -32.11951 -31.55041 -31.33257 -28.66460 -26.24395 -25.48694 -24.72339 -23.45781 -22.66300 -21.14790 -20.87013 -20.11204 -19.53850 -18.18965 -17.84279 -17.09825 -16.91971 -16.25359 -16.01306 -15.71061 -15.20223 -15.08530 -14.85501 -14.25940 -14.01575 -13.71929 -13.59464 -13.52983 -13.00927 -12.77008 -12.65909 -12.49874 -12.25266 -12.09787 -11.85365 -11.41235 -11.25813 -11.22452 -10.98662 -10.87847 -10.68410 -10.37501 -10.27659 -10.00200 -9.90362 -9.80321 -9.77567 -9.70672 -8.94129 -8.83642 -8.45719 -6.78462 -5.86647 -3.31693 1.18185 1.90322 2.67589 2.94633 3.23674 3.32347 3.38560 3.38931 3.87638 4.14572 4.22317 4.41821 4.64708 4.81993 4.86081 4.89831 5.11386 5.17210 5.26682 5.33107 5.34955 5.53148 5.59940 5.61960 5.68362 5.69976 5.85203 5.85874 5.97229 6.02450 6.15157 6.24945 6.33105 6.49992 6.58580 6.68760 6.72846 6.80302 7.32830 7.57737 7.60986 7.73497 7.96052 8.18975 8.27138 8.36468 9.14243 9.79012 10.25202 11.20850 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.002204 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.959369 B =12701.463512 C =13113.283487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.066 3.934 15 H 0.051 0.949 16 C 0.132 3.868 17 N -0.719 5.719 18 C 0.512 3.488 19 O -0.548 6.548 20 C -0.136 4.136 21 C -0.025 4.025 22 C 0.018 3.982 23 C -0.231 4.231 24 C -0.061 4.061 25 O 0.098 5.902 26 N -0.363 5.363 27 C 0.128 3.872 28 H 0.255 0.745 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.403 0.597 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.172 0.828 43 H 0.216 0.784 44 H 0.044 0.956 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.558 -16.186 -6.202 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.315 6.315 14 C 0.004 3.996 15 H 0.069 0.931 16 C 0.008 3.992 17 N -0.370 5.370 18 C 0.298 3.702 19 O -0.426 6.426 20 C -0.177 4.177 21 C -0.064 4.064 22 C -0.140 4.140 23 C -0.253 4.253 24 C -0.143 4.143 25 O 0.031 5.969 26 N -0.067 5.067 27 C -0.002 4.002 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.190 0.810 43 H 0.232 0.768 44 H 0.062 0.938 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.174 -16.622 -6.302 23.372 hybrid contribution 1.075 1.621 0.370 1.980 sum 16.249 -15.001 -5.932 22.897 Atomic orbital electron populations 1.70056 1.05242 1.25719 1.53573 1.25050 0.95300 0.98431 1.00433 0.86371 0.78919 0.83313 0.78151 1.21022 1.21568 1.20805 1.19168 0.92348 0.84887 1.43210 0.91652 1.43825 1.31469 1.01533 1.54430 1.20996 0.88438 0.95442 0.89905 1.22775 0.97077 1.01329 1.00413 1.22014 0.92784 0.92190 0.91804 1.86075 1.70673 1.37967 1.36793 1.22626 0.94880 0.93891 0.88154 0.93085 1.21439 0.88988 0.96076 0.92714 1.46010 1.36320 1.31605 1.23030 1.20499 0.82480 0.80059 0.87180 1.90698 1.69639 1.58054 1.24249 1.21602 0.97510 0.98775 0.99787 1.19731 0.93974 0.97074 0.95581 1.23744 0.95896 1.01968 0.92442 1.22809 0.93846 1.07273 1.01346 1.26041 0.96452 1.02672 0.89132 1.84854 1.12451 1.62310 1.37246 1.73861 1.05062 1.15758 1.11991 1.21410 0.95130 0.88978 0.94637 0.93478 0.95454 0.90646 0.92096 0.92384 0.92063 0.91249 0.90214 0.90971 0.76261 0.88352 0.88794 0.88676 0.88969 0.81038 0.76754 0.93812 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.00 55.49 0.61 -24.89 16 2 C 0.01 0.19 4.89 -17.43 -0.09 0.10 16 3 Si 0.90 21.14 29.58 -169.99 -5.03 16.11 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.27 -7.01 9.46 -15.06 -0.14 -7.15 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -14.19 2.23 -172.02 -0.38 -14.57 16 10 C 0.18 4.12 4.70 -3.19 -0.02 4.10 16 11 C -0.18 -3.30 5.79 -27.17 -0.16 -3.46 16 12 C 0.09 1.54 6.37 36.42 0.23 1.77 16 13 O -0.40 -6.94 9.38 -26.53 -0.25 -7.19 16 14 C 0.07 1.15 2.68 -25.78 -0.07 1.08 16 15 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.13 2.00 5.34 -4.04 -0.02 1.97 16 17 N -0.72 -9.42 5.49 -60.29 -0.33 -9.75 16 18 C 0.51 6.73 7.83 -10.98 -0.09 6.65 16 19 O -0.55 -9.06 15.98 5.56 0.09 -8.97 16 20 C -0.14 -1.34 5.67 -27.88 -0.16 -1.50 16 21 C -0.03 -0.24 5.10 -27.88 -0.14 -0.39 16 22 C 0.02 0.17 6.59 -82.10 -0.54 -0.37 16 23 C -0.23 -1.58 11.12 -39.38 -0.44 -2.02 16 24 C -0.06 -0.34 12.30 29.74 0.37 0.02 16 25 O 0.10 0.87 11.20 17.18 0.19 1.06 16 26 N -0.36 -3.92 12.06 33.42 0.40 -3.52 16 27 C 0.13 2.60 5.12 -3.83 -0.02 2.58 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.70 8.04 -51.93 -0.42 0.28 16 30 H 0.08 1.94 6.37 -51.93 -0.33 1.61 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.08 8.01 -51.93 -0.42 0.67 16 33 H 0.06 1.19 7.40 -51.93 -0.38 0.81 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.40 4.63 8.46 -40.82 -0.35 4.29 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.17 0.77 8.06 -52.48 -0.42 0.34 16 43 H 0.22 0.22 8.06 -52.49 -0.42 -0.21 16 44 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -32.15 371.05 -7.31 -39.46 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.92 Total: 3.26 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.28 Total: 3.41 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.30 Total: -52.73 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.03 Total: -15.10 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.15 -7.31 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149967169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.154 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds