Wall clock time and date at job start Tue Mar 31 2020 14:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48508 * 109.46787 * 239.99771 * 3 2 1 5 5 H 1.48490 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46996 * 120.00295 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42156 * 108.75863 * 91.39671 * 12 11 10 14 14 C 1.38014 * 119.43607 * 272.77134 * 13 12 11 15 15 H 1.08996 * 109.47323 * 303.42857 * 14 13 12 16 16 C 1.52998 * 109.46698 * 183.43133 * 14 13 12 17 17 N 1.46509 * 109.47216 * 65.00139 * 16 14 13 18 18 C 1.34775 * 120.00003 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00205 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99563 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47311 * 179.97438 * 21 20 18 23 23 C 1.41382 * 126.80371 * 124.99672 * 22 21 20 24 24 C 1.35445 * 103.98798 * 180.02562 * 23 22 21 25 25 O 1.34039 * 106.44518 * 0.02562 * 24 23 22 26 26 N 1.20923 * 111.56832 * 359.70899 * 25 24 23 27 27 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 28 28 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 30 30 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 31 31 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 32 32 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 33 33 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 34 34 H 1.08994 * 109.58682 * 211.17827 * 12 11 10 35 35 H 1.09002 * 109.47542 * 184.99994 * 16 14 13 36 36 H 1.09006 * 109.47603 * 305.00184 * 16 14 13 37 37 H 0.96996 * 119.99534 * 359.97438 * 17 16 14 38 38 H 1.08994 * 109.46728 * 299.99244 * 20 18 17 39 39 H 1.08991 * 109.47157 * 59.99751 * 20 18 17 40 40 H 1.09002 * 109.47542 * 299.99797 * 21 20 18 41 41 H 1.09006 * 109.47603 * 59.99987 * 21 20 18 42 42 H 1.08003 * 128.00531 * 359.96826 * 23 22 21 43 43 H 1.08001 * 126.77877 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46167 * 149.28169 * 27 9 7 45 45 H 1.09004 * 109.45622 * 29.32335 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2341 -4.6209 -1.9295 14 6 2.8931 -4.2226 -0.7842 15 1 3.6429 -3.4735 -1.0383 16 6 3.5770 -5.4316 -0.1428 17 7 4.6233 -5.9325 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 6 7.1234 -8.7243 -0.9575 22 6 8.1996 -9.2396 -1.8780 23 6 9.5640 -9.4319 -1.5616 24 6 10.1033 -9.9034 -2.7112 25 8 9.1034 -9.9661 -3.6016 26 7 8.0562 -9.5997 -3.1207 27 6 1.8755 -3.6165 0.2126 28 1 -0.4851 0.8399 -0.0004 29 1 -0.7245 -2.3819 -0.5672 30 1 0.1607 -1.3474 -1.7085 31 1 -0.4845 -3.1866 -3.0413 32 1 -0.1723 -4.3602 -1.7405 33 1 2.1329 -2.7067 -2.6870 34 1 1.5435 -3.9957 -3.7680 35 1 4.0224 -5.1357 0.8071 36 1 2.8405 -6.2164 0.0302 37 1 4.7832 -5.4960 -1.8890 38 1 5.9945 -7.8107 -2.5489 39 1 7.1761 -6.7306 -1.7709 40 1 7.5684 -8.4286 -0.0074 41 1 6.3869 -9.5092 -0.7850 42 1 10.0614 -9.2452 -0.6213 43 1 11.1354 -10.1744 -2.8778 44 1 1.0509 -4.3142 0.3591 45 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149967169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:35 Heat of formation + Delta-G solvation = -22.558736 kcal Electronic energy + Delta-G solvation = -27027.692956 eV Core-core repulsion = 23048.487142 eV Total energy + Delta-G solvation = -3979.205814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.84675 -41.01264 -40.22547 -37.03706 -36.37538 -35.85371 -33.71574 -33.45324 -33.01136 -32.13220 -30.16537 -27.61973 -27.13927 -26.05466 -24.17752 -24.01134 -22.31322 -21.89441 -21.38878 -21.01045 -18.88330 -18.83470 -18.47886 -17.98786 -17.66358 -17.34651 -16.83525 -16.64062 -16.47769 -15.83216 -15.68454 -15.50135 -14.97277 -14.75296 -14.59271 -14.29989 -14.11776 -13.72340 -13.65471 -13.37100 -13.29109 -13.13351 -13.00822 -12.74878 -12.59083 -12.51516 -12.42032 -12.10631 -11.95206 -11.77564 -11.49968 -11.33145 -11.09868 -10.85254 -10.54620 -10.50426 -10.28808 -10.09336 -8.73946 -7.90342 -5.37938 0.67729 1.32029 1.45778 1.47052 1.54001 1.62530 2.17249 2.48757 2.54217 2.75081 3.23513 3.25525 3.54779 3.62328 3.79459 4.04105 4.10490 4.12843 4.20618 4.23240 4.32866 4.35605 4.50636 4.55266 4.57922 4.65179 4.66698 4.73259 4.75835 4.84212 4.90093 4.94871 5.07254 5.13244 5.17301 5.22077 5.23427 5.42145 5.45481 5.59723 5.73596 6.34227 6.54211 6.73332 7.12864 7.22290 7.40389 7.85036 8.26501 9.15268 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.002204 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.959369 B =12701.463512 C =13113.283487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.270 4.270 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.092 3.908 13 O -0.393 6.393 14 C 0.086 3.914 15 H 0.046 0.954 16 C 0.142 3.858 17 N -0.713 5.713 18 C 0.513 3.487 19 O -0.584 6.584 20 C -0.124 4.124 21 C -0.022 4.022 22 C 0.003 3.997 23 C -0.243 4.243 24 C -0.043 4.043 25 O 0.086 5.914 26 N -0.398 5.398 27 C 0.123 3.877 28 H 0.250 0.750 29 H -0.007 1.007 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.413 0.587 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.194 0.806 43 H 0.261 0.739 44 H 0.042 0.958 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.186 -17.108 -7.428 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.400 4.400 8 H 0.086 0.914 9 N -0.328 5.328 10 C 0.061 3.939 11 C -0.204 4.204 12 C 0.016 3.984 13 O -0.312 6.312 14 C 0.024 3.976 15 H 0.064 0.936 16 C 0.017 3.983 17 N -0.365 5.365 18 C 0.301 3.699 19 O -0.464 6.464 20 C -0.164 4.164 21 C -0.060 4.060 22 C -0.155 4.155 23 C -0.264 4.264 24 C -0.124 4.124 25 O 0.021 5.979 26 N -0.103 5.103 27 C -0.005 4.005 28 H 0.059 0.941 29 H 0.011 0.989 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.249 0.751 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.211 0.789 43 H 0.277 0.723 44 H 0.060 0.940 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.835 -17.571 -7.554 26.151 hybrid contribution 0.286 1.835 0.789 2.018 sum 18.121 -15.737 -6.765 24.936 Atomic orbital electron populations 1.70223 1.06627 1.25918 1.55278 1.25791 0.96026 1.01477 1.00927 0.85369 0.77568 0.79290 0.78377 1.20184 1.22185 1.20237 1.19476 0.92601 0.85882 1.42089 0.91393 1.44028 1.31528 1.02144 1.55079 1.20771 0.86993 0.96057 0.90120 1.22630 0.98794 0.99213 0.99725 1.22071 0.91310 0.91583 0.93467 1.86104 1.70551 1.37949 1.36560 1.22295 0.93663 0.94451 0.87151 0.93613 1.21183 0.89333 0.94865 0.92900 1.45912 1.35707 1.31722 1.23126 1.21029 0.82550 0.79321 0.87004 1.90686 1.70692 1.59063 1.25993 1.21545 0.96716 0.99317 0.98823 1.19644 0.93886 0.96491 0.95991 1.23863 0.97010 1.02368 0.92291 1.23147 0.92764 1.07682 1.02825 1.26890 0.97325 1.00356 0.87858 1.84802 1.12813 1.62303 1.38011 1.73858 1.06370 1.17312 1.12803 1.21570 0.95764 0.87755 0.95434 0.94094 0.98901 0.93509 0.89704 0.92182 0.94115 0.87464 0.90162 0.91723 0.75059 0.87912 0.86747 0.88239 0.90553 0.78895 0.72304 0.93997 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 11.00 21.65 0.24 -54.17 16 2 C -0.05 -2.54 4.89 84.86 0.41 -2.13 16 3 Si 0.97 43.87 29.58 68.60 2.03 45.90 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.27 -14.36 9.46 84.03 0.80 -13.57 16 8 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -29.48 2.23 -698.15 -1.55 -31.03 16 10 C 0.19 8.84 4.70 86.38 0.41 9.24 16 11 C -0.16 -5.97 5.79 30.31 0.18 -5.79 16 12 C 0.09 3.01 6.37 71.50 0.46 3.47 16 13 O -0.39 -13.00 9.38 -117.85 -1.11 -14.11 16 14 C 0.09 2.89 2.68 31.21 0.08 2.97 16 15 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 16 C 0.14 4.15 5.34 86.38 0.46 4.61 16 17 N -0.71 -17.56 5.49 -463.04 -2.54 -20.11 16 18 C 0.51 12.88 7.83 87.66 0.69 13.57 16 19 O -0.58 -19.01 15.98 -3.02 -0.05 -19.06 16 20 C -0.12 -2.24 5.67 29.85 0.17 -2.08 16 21 C -0.02 -0.40 5.10 29.85 0.15 -0.25 16 22 C 0.00 0.05 6.59 43.58 0.29 0.34 16 23 C -0.24 -2.74 11.12 22.40 0.25 -2.49 16 24 C -0.04 -0.36 12.30 67.17 0.83 0.47 16 25 O 0.09 1.38 11.20 71.64 0.80 2.18 16 26 N -0.40 -8.20 12.06 -49.56 -0.60 -8.79 16 27 C 0.12 5.02 5.12 87.25 0.45 5.46 16 28 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 29 H -0.01 -0.38 8.04 -2.39 -0.02 -0.40 16 30 H 0.05 2.47 6.37 -2.39 -0.02 2.46 16 31 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.06 2.17 8.01 -2.39 -0.02 2.15 16 33 H 0.04 1.53 7.40 -2.39 -0.02 1.51 16 34 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.41 8.59 8.46 -92.71 -0.78 7.80 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.71 8.09 -2.39 -0.02 1.69 16 41 H 0.08 1.63 8.10 -2.38 -0.02 1.61 16 42 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.26 -0.65 8.06 -2.91 -0.02 -0.67 16 44 H 0.04 1.71 8.11 -2.38 -0.02 1.69 16 45 H 0.05 2.13 7.98 -2.38 -0.02 2.11 16 Total: -1.00 -71.39 371.05 3.04 -68.35 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.21 Total: 17.01 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.61 Total: 13.83 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -4.46 Total: -114.11 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.35 Total: -30.99 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.39 3.04 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149967169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.793 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds