Wall clock time and date at job start Tue Mar 31 2020 14:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48503 * 109.47317 * 239.99857 * 3 2 1 5 5 H 1.48499 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47186 * 119.99977 * 3 2 1 7 7 C 1.38819 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99595 * 160.74681 * 7 2 1 9 9 N 1.36934 * 120.00121 * 340.74124 * 7 2 1 10 10 C 1.43423 * 120.63631 * 155.63518 * 9 7 2 11 11 C 1.55333 * 116.24141 * 269.37665 * 10 9 7 12 12 C 1.55186 * 108.87311 * 319.46477 * 11 10 9 13 13 O 1.39809 * 110.45734 * 322.14167 * 12 11 10 14 14 C 1.42375 * 108.54025 * 101.32227 * 13 12 11 15 15 H 1.08995 * 108.62392 * 28.31544 * 14 13 12 16 16 C 1.53006 * 108.61993 * 146.23069 * 14 13 12 17 17 N 1.46501 * 109.46730 * 302.05386 * 16 14 13 18 18 C 1.34775 * 119.99716 * 180.02562 * 17 16 14 19 19 O 1.21283 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.00117 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47428 * 180.02562 * 20 18 17 22 22 C 1.50692 * 109.47291 * 180.02562 * 21 20 18 23 23 C 1.41380 * 126.80019 * 124.70929 * 22 21 20 24 24 C 1.35456 * 103.98622 * 179.88758 * 23 22 21 25 25 O 1.34045 * 106.44153 * 0.36873 * 24 23 22 26 26 N 1.20918 * 111.56940 * 359.74672 * 25 24 23 27 27 C 1.46924 * 113.68341 * 267.27055 * 14 13 12 28 28 H 0.96998 * 120.00030 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.12654 * 31.13863 * 10 9 7 30 30 H 1.09001 * 108.12644 * 147.62018 * 10 9 7 31 31 H 1.09004 * 109.56706 * 79.27754 * 11 10 9 32 32 H 1.08997 * 109.57040 * 199.64344 * 11 10 9 33 33 H 1.08997 * 109.25990 * 82.42008 * 12 11 10 34 34 H 1.09001 * 109.25395 * 201.86424 * 12 11 10 35 35 H 1.09001 * 109.46845 * 182.05448 * 16 14 13 36 36 H 1.08994 * 109.47253 * 62.05254 * 16 14 13 37 37 H 0.96995 * 120.00256 * 359.97438 * 17 16 14 38 38 H 1.08996 * 109.47148 * 59.99979 * 20 18 17 39 39 H 1.09003 * 109.46980 * 300.00089 * 20 18 17 40 40 H 1.09006 * 109.47247 * 300.00285 * 21 20 18 41 41 H 1.09004 * 109.47411 * 59.99533 * 21 20 18 42 42 H 1.07999 * 128.01172 * 0.02562 * 23 22 21 43 43 H 1.08002 * 126.78291 * 180.09297 * 24 23 22 44 44 H 1.08994 * 109.99104 * 176.19583 * 27 14 13 45 45 H 1.09006 * 109.99041 * 297.47384 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0449 -1.2285 -0.3079 9 7 1.3830 -2.3548 0.3922 10 6 1.8491 -3.6320 -0.0645 11 6 1.2150 -4.1648 -1.3786 12 6 -0.3043 -3.8484 -1.3671 13 8 -0.8269 -4.0081 -0.0802 14 6 -0.9699 -2.7218 0.5131 15 1 -1.1312 -1.9895 -0.2779 16 6 -2.2010 -2.7369 1.4216 17 7 -3.3826 -3.1025 0.6365 18 6 -4.5895 -3.1794 1.2314 19 8 -4.6974 -2.9456 2.4166 20 6 -5.8052 -3.5549 0.4238 21 6 -7.0364 -3.5689 1.3319 22 6 -8.2519 -3.9449 0.5244 23 6 -9.1503 -5.0039 0.7895 24 6 -10.0590 -4.9207 -0.2116 25 8 -9.6817 -3.8904 -0.9817 26 7 -8.6795 -3.3626 -0.5584 27 6 0.1940 -2.3056 1.3073 28 1 -0.4850 0.8400 -0.0004 29 1 2.9274 -3.5672 -0.2102 30 1 1.6622 -4.3624 0.7227 31 1 1.6830 -3.6770 -2.2337 32 1 1.3631 -5.2426 -1.4446 33 1 -0.4600 -2.8205 -1.6944 34 1 -0.8174 -4.5246 -2.0510 35 1 -2.3447 -1.7472 1.8552 36 1 -2.0550 -3.4653 2.2191 37 1 -3.2965 -3.2884 -0.3116 38 1 -5.6618 -4.5445 -0.0098 39 1 -5.9507 -2.8263 -0.3738 40 1 -6.8911 -4.2972 2.1298 41 1 -7.1796 -2.5790 1.7653 42 1 -9.1206 -5.7134 1.6032 43 1 -10.9155 -5.5610 -0.3624 44 1 0.0495 -1.2902 1.6763 45 1 0.3377 -2.9890 2.1443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149967170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:39 Heat of formation + Delta-G solvation = 5.667708 kcal Electronic energy + Delta-G solvation = -27550.889374 eV Core-core repulsion = 23572.907551 eV Total energy + Delta-G solvation = -3977.981823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.16334 -39.67077 -38.75846 -35.55779 -35.01183 -34.46573 -32.46473 -32.13506 -31.44487 -30.99088 -28.67125 -26.33882 -25.34720 -24.55365 -23.37968 -22.50586 -21.02383 -20.80224 -19.88516 -19.58350 -18.09730 -17.76583 -17.14356 -16.74340 -16.12389 -15.62941 -15.53710 -15.07989 -14.86151 -14.48430 -14.17291 -13.88479 -13.87292 -13.51648 -13.23694 -13.03742 -12.67739 -12.50063 -12.35194 -12.23662 -11.94544 -11.76237 -11.41589 -11.23726 -11.13064 -10.84404 -10.75120 -10.50602 -10.28539 -10.18424 -9.98250 -9.90699 -9.71875 -9.60641 -9.50055 -8.81783 -8.67234 -8.50992 -6.83346 -5.93246 -3.31970 1.25755 1.98671 2.87499 3.02325 3.33408 3.40308 3.41801 3.46531 3.97613 4.31371 4.42844 4.68446 4.79231 4.90344 4.97298 5.03652 5.20214 5.23094 5.27369 5.38407 5.46723 5.70265 5.72163 5.80569 5.80954 5.91076 5.96188 6.00007 6.13640 6.31897 6.40488 6.46730 6.56474 6.65550 6.69578 6.80327 6.91641 6.94730 7.10819 7.31536 7.70605 7.81566 8.04455 8.11324 8.31149 8.48225 9.05923 9.74062 10.28436 11.15839 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002547 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.614323 B =10990.303662 C =11608.949006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.161 3.839 11 C -0.172 4.172 12 C 0.067 3.933 13 O -0.370 6.370 14 C 0.060 3.940 15 H 0.107 0.893 16 C 0.121 3.879 17 N -0.713 5.713 18 C 0.510 3.490 19 O -0.551 6.551 20 C -0.136 4.136 21 C -0.025 4.025 22 C 0.019 3.981 23 C -0.231 4.231 24 C -0.063 4.063 25 O 0.098 5.902 26 N -0.362 5.362 27 C 0.143 3.857 28 H 0.256 0.744 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.401 0.599 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.172 0.828 43 H 0.216 0.784 44 H 0.104 0.896 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 -10.922 -1.234 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.032 3.968 11 C -0.213 4.213 12 C -0.011 4.011 13 O -0.288 6.288 14 C 0.002 3.998 15 H 0.125 0.875 16 C -0.004 4.004 17 N -0.363 5.363 18 C 0.296 3.704 19 O -0.430 6.430 20 C -0.177 4.177 21 C -0.064 4.064 22 C -0.139 4.139 23 C -0.253 4.253 24 C -0.144 4.144 25 O 0.031 5.969 26 N -0.066 5.066 27 C 0.018 3.982 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.235 0.765 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.189 0.811 43 H 0.232 0.768 44 H 0.122 0.878 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -15.868 -9.718 -0.996 18.634 hybrid contribution 0.368 0.195 -0.184 0.455 sum -15.500 -9.523 -1.180 18.230 Atomic orbital electron populations 1.69852 1.05208 1.25844 1.54393 1.24907 0.95311 0.98366 1.00979 0.86324 0.78933 0.83153 0.78098 1.21036 1.21639 1.21071 1.19222 0.93654 0.85197 1.39845 0.91335 1.44099 1.34154 1.01465 1.51046 1.20367 0.95895 0.87795 0.92742 1.23579 0.96966 0.99054 1.01714 1.22378 0.93420 1.00742 0.84571 1.87549 1.83411 1.29014 1.28876 1.22203 0.93912 0.84855 0.98872 0.87538 1.21709 0.83567 1.00659 0.94421 1.45936 1.07410 1.69562 1.13373 1.20459 0.84527 0.77333 0.88068 1.90684 1.86049 1.50404 1.15880 1.21598 0.92546 1.04154 0.99369 1.19733 0.86808 1.04235 0.95586 1.23760 1.00179 0.95082 0.94925 1.22806 0.96752 1.02438 1.03269 1.26034 1.02141 0.93496 0.92775 1.84855 1.32117 1.35392 1.44504 1.73866 0.99581 1.19617 1.13569 1.20745 0.85450 1.01387 0.90606 0.93392 0.94911 0.95045 0.92495 0.93193 0.91866 0.93120 0.90393 0.92031 0.76534 0.88898 0.88469 0.88736 0.88957 0.81069 0.76797 0.87827 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.69 9.56 55.49 0.53 -23.16 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 20.90 29.60 -169.99 -5.03 15.87 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.49 9.62 -15.06 -0.14 -6.64 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.04 2.61 -174.49 -0.46 -14.49 16 10 C 0.16 3.39 5.32 -4.43 -0.02 3.36 16 11 C -0.17 -3.19 6.75 -24.34 -0.16 -3.36 16 12 C 0.07 1.24 6.38 38.31 0.24 1.48 16 13 O -0.37 -7.16 9.44 -32.42 -0.31 -7.46 16 14 C 0.06 1.22 1.98 -29.64 -0.06 1.16 16 15 H 0.11 2.42 5.23 -51.93 -0.27 2.15 16 16 C 0.12 2.22 5.25 -4.04 -0.02 2.20 16 17 N -0.71 -11.28 5.41 -60.29 -0.33 -11.61 16 18 C 0.51 7.86 7.83 -10.99 -0.09 7.77 16 19 O -0.55 -10.30 15.98 5.56 0.09 -10.21 16 20 C -0.14 -1.58 5.67 -27.88 -0.16 -1.74 16 21 C -0.03 -0.28 5.10 -27.89 -0.14 -0.42 16 22 C 0.02 0.21 6.59 -82.10 -0.54 -0.33 16 23 C -0.23 -1.79 11.12 -39.38 -0.44 -2.23 16 24 C -0.06 -0.40 12.30 29.74 0.37 -0.04 16 25 O 0.10 0.96 11.20 17.16 0.19 1.15 16 26 N -0.36 -4.33 12.06 33.42 0.40 -3.92 16 27 C 0.14 3.23 4.71 -4.93 -0.02 3.21 16 28 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 30 H 0.03 0.65 7.98 -51.93 -0.41 0.23 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.32 6.66 -51.93 -0.35 0.97 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.40 5.73 8.26 -40.82 -0.34 5.39 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 41 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.22 0.37 8.06 -52.49 -0.42 -0.05 16 44 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -30.22 366.48 -7.37 -37.59 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.71 Total: 6.33 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.28 Total: 4.39 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.15 Total: -53.18 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.03 Total: -16.52 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.22 -7.37 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149967170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.258 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds