Wall clock time and date at job start Tue Mar 31 2020 14:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48503 * 109.47317 * 239.99857 * 3 2 1 5 5 H 1.48499 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47186 * 119.99977 * 3 2 1 7 7 C 1.38819 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99595 * 160.74681 * 7 2 1 9 9 N 1.36934 * 120.00121 * 340.74124 * 7 2 1 10 10 C 1.43423 * 120.63631 * 155.63518 * 9 7 2 11 11 C 1.55333 * 116.24141 * 269.37665 * 10 9 7 12 12 C 1.55186 * 108.87311 * 319.46477 * 11 10 9 13 13 O 1.39809 * 110.45734 * 322.14167 * 12 11 10 14 14 C 1.42375 * 108.54025 * 101.32227 * 13 12 11 15 15 H 1.08995 * 108.62392 * 28.31544 * 14 13 12 16 16 C 1.53006 * 108.61993 * 146.23069 * 14 13 12 17 17 N 1.46501 * 109.46730 * 302.05386 * 16 14 13 18 18 C 1.34775 * 119.99716 * 180.02562 * 17 16 14 19 19 O 1.21283 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.00117 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47428 * 180.02562 * 20 18 17 22 22 C 1.50692 * 109.47291 * 180.02562 * 21 20 18 23 23 C 1.41380 * 126.80019 * 124.70929 * 22 21 20 24 24 C 1.35456 * 103.98622 * 179.88758 * 23 22 21 25 25 O 1.34045 * 106.44153 * 0.36873 * 24 23 22 26 26 N 1.20918 * 111.56940 * 359.74672 * 25 24 23 27 27 C 1.46924 * 113.68341 * 267.27055 * 14 13 12 28 28 H 0.96998 * 120.00030 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.12654 * 31.13863 * 10 9 7 30 30 H 1.09001 * 108.12644 * 147.62018 * 10 9 7 31 31 H 1.09004 * 109.56706 * 79.27754 * 11 10 9 32 32 H 1.08997 * 109.57040 * 199.64344 * 11 10 9 33 33 H 1.08997 * 109.25990 * 82.42008 * 12 11 10 34 34 H 1.09001 * 109.25395 * 201.86424 * 12 11 10 35 35 H 1.09001 * 109.46845 * 182.05448 * 16 14 13 36 36 H 1.08994 * 109.47253 * 62.05254 * 16 14 13 37 37 H 0.96995 * 120.00256 * 359.97438 * 17 16 14 38 38 H 1.08996 * 109.47148 * 59.99979 * 20 18 17 39 39 H 1.09003 * 109.46980 * 300.00089 * 20 18 17 40 40 H 1.09006 * 109.47247 * 300.00285 * 21 20 18 41 41 H 1.09004 * 109.47411 * 59.99533 * 21 20 18 42 42 H 1.07999 * 128.01172 * 0.02562 * 23 22 21 43 43 H 1.08002 * 126.78291 * 180.09297 * 24 23 22 44 44 H 1.08994 * 109.99104 * 176.19583 * 27 14 13 45 45 H 1.09006 * 109.99041 * 297.47384 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0449 -1.2285 -0.3079 9 7 1.3830 -2.3548 0.3922 10 6 1.8491 -3.6320 -0.0645 11 6 1.2150 -4.1648 -1.3786 12 6 -0.3043 -3.8484 -1.3671 13 8 -0.8269 -4.0081 -0.0802 14 6 -0.9699 -2.7218 0.5131 15 1 -1.1312 -1.9895 -0.2779 16 6 -2.2010 -2.7369 1.4216 17 7 -3.3826 -3.1025 0.6365 18 6 -4.5895 -3.1794 1.2314 19 8 -4.6974 -2.9456 2.4166 20 6 -5.8052 -3.5549 0.4238 21 6 -7.0364 -3.5689 1.3319 22 6 -8.2519 -3.9449 0.5244 23 6 -9.1503 -5.0039 0.7895 24 6 -10.0590 -4.9207 -0.2116 25 8 -9.6817 -3.8904 -0.9817 26 7 -8.6795 -3.3626 -0.5584 27 6 0.1940 -2.3056 1.3073 28 1 -0.4850 0.8400 -0.0004 29 1 2.9274 -3.5672 -0.2102 30 1 1.6622 -4.3624 0.7227 31 1 1.6830 -3.6770 -2.2337 32 1 1.3631 -5.2426 -1.4446 33 1 -0.4600 -2.8205 -1.6944 34 1 -0.8174 -4.5246 -2.0510 35 1 -2.3447 -1.7472 1.8552 36 1 -2.0550 -3.4653 2.2191 37 1 -3.2965 -3.2884 -0.3116 38 1 -5.6618 -4.5445 -0.0098 39 1 -5.9507 -2.8263 -0.3738 40 1 -6.8911 -4.2972 2.1298 41 1 -7.1796 -2.5790 1.7653 42 1 -9.1206 -5.7134 1.6032 43 1 -10.9155 -5.5610 -0.3624 44 1 0.0495 -1.2902 1.6763 45 1 0.3377 -2.9890 2.1443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149967170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:39 Heat of formation + Delta-G solvation = -13.881160 kcal Electronic energy + Delta-G solvation = -27551.737077 eV Core-core repulsion = 23572.907551 eV Total energy + Delta-G solvation = -3978.829526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.85722 -41.09299 -40.25568 -36.81551 -36.39901 -35.86628 -33.88209 -33.23240 -32.82434 -32.08509 -30.29935 -27.71020 -27.07680 -25.88969 -24.12966 -24.01485 -22.40842 -21.85520 -21.32338 -21.03269 -18.96065 -18.82880 -18.48181 -17.94478 -17.71720 -17.02449 -16.77863 -16.58883 -16.22866 -15.78305 -15.60540 -15.51258 -15.04551 -14.72896 -14.54391 -14.22240 -14.12555 -13.87322 -13.55188 -13.36833 -13.30453 -13.28327 -12.95639 -12.63427 -12.58422 -12.51255 -12.32088 -11.96126 -11.93856 -11.78714 -11.38961 -11.20185 -11.09366 -10.85571 -10.56643 -10.50931 -10.27855 -10.06896 -8.72563 -7.90457 -5.31099 0.67787 1.31580 1.47355 1.51099 1.56111 1.62579 2.21543 2.51486 2.54721 3.10497 3.24045 3.26846 3.50083 3.61966 3.78844 4.06941 4.14944 4.21637 4.27298 4.33504 4.36877 4.41369 4.50954 4.57765 4.64116 4.72701 4.75091 4.77957 4.78911 4.93780 4.96781 5.06078 5.07611 5.17861 5.18153 5.21968 5.33808 5.39264 5.43862 5.50873 5.67227 6.35353 6.49908 6.55814 7.09862 7.22591 7.40821 7.82466 8.35352 9.15202 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002547 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.614323 B =10990.303662 C =11608.949006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.037 4.037 3 Si 0.960 3.040 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.165 4.165 12 C 0.067 3.933 13 O -0.366 6.366 14 C 0.080 3.920 15 H 0.083 0.917 16 C 0.133 3.867 17 N -0.709 5.709 18 C 0.510 3.490 19 O -0.586 6.586 20 C -0.122 4.122 21 C -0.021 4.021 22 C 0.002 3.998 23 C -0.241 4.241 24 C -0.043 4.043 25 O 0.087 5.913 26 N -0.399 5.399 27 C 0.144 3.856 28 H 0.250 0.750 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.195 0.805 43 H 0.263 0.737 44 H 0.077 0.923 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 -12.934 -2.092 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.234 4.234 3 Si 0.789 3.211 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.026 3.974 11 C -0.206 4.206 12 C -0.010 4.010 13 O -0.284 6.284 14 C 0.021 3.979 15 H 0.101 0.899 16 C 0.008 3.992 17 N -0.359 5.359 18 C 0.298 3.702 19 O -0.467 6.467 20 C -0.163 4.163 21 C -0.060 4.060 22 C -0.156 4.156 23 C -0.263 4.263 24 C -0.124 4.124 25 O 0.022 5.978 26 N -0.105 5.105 27 C 0.019 3.981 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.246 0.754 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.212 0.788 43 H 0.279 0.721 44 H 0.096 0.904 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.157 -11.756 -1.883 20.883 hybrid contribution 0.761 0.751 0.098 1.074 sum -16.395 -11.005 -1.786 19.827 Atomic orbital electron populations 1.69988 1.05855 1.25746 1.54728 1.25489 0.96055 1.00568 1.01241 0.85468 0.77713 0.80047 0.77887 1.20637 1.22122 1.21165 1.19372 0.93672 0.86351 1.39957 0.91877 1.44222 1.34540 1.01931 1.51596 1.20492 0.96012 0.86719 0.94190 1.23494 0.96600 1.00658 0.99815 1.22434 0.93888 1.00115 0.84593 1.87546 1.83445 1.28088 1.29370 1.21742 0.93573 0.84715 0.97888 0.89887 1.21364 0.84045 0.99668 0.94169 1.45858 1.06936 1.69496 1.13657 1.21097 0.85072 0.76154 0.87858 1.90668 1.86530 1.51857 1.17641 1.21539 0.90674 1.05268 0.98783 1.19629 0.87070 1.03522 0.95731 1.23835 1.00514 0.96251 0.94968 1.23144 0.96370 1.02242 1.04511 1.26913 1.02419 0.92019 0.91059 1.84802 1.31609 1.36347 1.45071 1.73868 1.00875 1.21078 1.14642 1.20672 0.86274 1.00081 0.91055 0.94020 0.95094 0.94673 0.92805 0.90254 0.94607 0.89500 0.92214 0.92237 0.75442 0.86645 0.88168 0.88141 0.90720 0.78784 0.72149 0.90436 0.95716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.94 9.56 21.65 0.21 -48.74 16 2 C -0.04 -1.95 4.92 84.86 0.42 -1.53 16 3 Si 0.96 43.46 29.60 68.60 2.03 45.49 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.26 -13.85 9.62 84.04 0.81 -13.04 16 8 H 0.06 3.31 7.88 -2.91 -0.02 3.29 16 9 N -0.60 -28.95 2.61 -705.97 -1.84 -30.80 16 10 C 0.15 6.35 5.32 87.75 0.47 6.81 16 11 C -0.16 -5.79 6.75 32.15 0.22 -5.57 16 12 C 0.07 2.37 6.38 72.73 0.46 2.84 16 13 O -0.37 -13.67 9.44 -138.91 -1.31 -14.98 16 14 C 0.08 3.25 1.98 28.71 0.06 3.30 16 15 H 0.08 3.85 5.23 -2.39 -0.01 3.84 16 16 C 0.13 4.95 5.25 86.38 0.45 5.40 16 17 N -0.71 -22.21 5.41 -463.05 -2.51 -24.72 16 18 C 0.51 15.58 7.83 87.66 0.69 16.26 16 19 O -0.59 -22.13 15.98 -3.04 -0.05 -22.18 16 20 C -0.12 -2.73 5.67 29.85 0.17 -2.56 16 21 C -0.02 -0.46 5.10 29.84 0.15 -0.31 16 22 C 0.00 0.05 6.59 43.58 0.29 0.33 16 23 C -0.24 -3.14 11.12 22.40 0.25 -2.89 16 24 C -0.04 -0.42 12.30 67.18 0.83 0.41 16 25 O 0.09 1.57 11.20 71.59 0.80 2.37 16 26 N -0.40 -9.21 12.06 -49.57 -0.60 -9.81 16 27 C 0.14 6.62 4.71 83.79 0.39 7.01 16 28 H 0.25 13.28 8.31 -92.71 -0.77 12.50 16 29 H 0.03 1.26 7.96 -2.39 -0.02 1.24 16 30 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 31 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 34 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.41 11.33 8.26 -92.71 -0.77 10.57 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.10 2.02 8.09 -2.38 -0.02 2.00 16 41 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 42 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.26 -0.34 8.06 -2.91 -0.02 -0.37 16 44 H 0.08 3.98 6.03 -2.39 -0.01 3.97 16 45 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -66.36 366.48 2.62 -63.74 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.24 Total: 23.15 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 5.65 Total: 16.47 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -4.74 Total: -114.06 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.56 Total: -34.79 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.36 2.62 -63.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149967170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.859 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds