Wall clock time and date at job start Tue Mar 31 2020 13:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47251 * 2 1 4 4 C 1.36929 * 119.99904 * 84.26818 * 3 2 1 5 5 H 1.08004 * 120.00490 * 28.85000 * 4 3 2 6 6 C 1.38817 * 120.00152 * 209.11957 * 4 3 2 7 7 N 1.31616 * 119.99704 * 18.62699 * 6 4 3 8 8 Si 1.86799 * 120.00010 * 198.62129 * 6 4 3 9 9 H 1.48500 * 109.46940 * 60.00497 * 8 6 4 10 10 H 1.48504 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47554 * 300.00380 * 8 6 4 12 12 C 1.46498 * 119.99936 * 264.27605 * 3 2 1 13 13 H 1.08995 * 109.47016 * 183.52300 * 12 3 2 14 14 C 1.53004 * 109.47324 * 63.52334 * 12 3 2 15 15 C 1.52998 * 109.47019 * 303.52177 * 12 3 2 16 16 N 1.46504 * 109.47148 * 305.00208 * 15 12 3 17 17 C 1.34776 * 119.99595 * 180.02562 * 16 15 12 18 18 O 1.21616 * 120.00224 * 359.97438 * 17 16 15 19 19 C 1.47264 * 119.99429 * 180.02562 * 17 16 15 20 20 N 1.29762 * 125.52307 * 359.69004 * 19 17 16 21 21 C 1.32596 * 116.74796 * 179.82856 * 20 19 17 22 22 C 1.34623 * 114.31419 * 0.44011 * 21 20 19 23 23 S 1.71629 * 109.59531 * 359.79419 * 22 21 20 24 24 C 1.51945 * 110.68756 * 179.81181 * 22 21 20 25 25 C 1.54230 * 104.84663 * 17.40154 * 24 22 21 26 26 C 1.52801 * 136.15198 * 180.02562 * 21 20 19 27 27 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47614 * 299.99974 * 1 2 3 29 29 H 1.09001 * 109.47226 * 60.00437 * 1 2 3 30 30 H 1.09000 * 109.47614 * 240.00025 * 2 1 3 31 31 H 1.09001 * 109.47226 * 119.99563 * 2 1 3 32 32 H 0.97001 * 120.00265 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47071 * 300.00031 * 14 12 3 34 34 H 1.08997 * 109.46949 * 59.99619 * 14 12 3 35 35 H 1.08996 * 109.47024 * 179.97438 * 14 12 3 36 36 H 1.09000 * 109.47346 * 65.00265 * 15 12 3 37 37 H 1.08999 * 109.47484 * 184.99926 * 15 12 3 38 38 H 0.96999 * 119.99841 * 359.97438 * 16 15 12 39 39 H 1.09006 * 110.36148 * 136.24535 * 24 22 21 40 40 H 1.09003 * 110.36291 * 258.44570 * 24 22 21 41 41 H 1.09003 * 110.94971 * 91.61361 * 25 24 22 42 42 H 1.09000 * 110.94915 * 215.29540 * 25 24 22 43 43 H 1.08997 * 110.31437 * 43.88060 * 26 21 20 44 44 H 1.09000 * 110.31653 * 281.69641 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 1.1799 5 1 2.3292 1.5314 2.0979 6 6 1.9978 3.4475 1.1971 7 7 1.4072 4.0627 0.1946 8 14 2.6514 4.4330 2.6432 9 1 4.1152 4.2162 2.7687 10 1 2.3816 5.8763 2.4209 11 1 1.9767 3.9899 3.8896 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1416 2.1479 -2.1507 15 6 3.4439 1.1928 -1.9782 16 7 4.5830 0.9791 -1.0820 17 6 5.6457 0.2643 -1.5017 18 8 5.6589 -0.2037 -2.6241 19 6 6.7905 0.0491 -0.6007 20 7 6.8914 0.5013 0.6114 21 6 8.0014 0.1991 1.2707 22 6 8.8804 -0.5391 0.5672 23 16 8.2452 -0.8558 -0.9955 24 6 10.1193 -0.8329 1.3962 25 6 9.6961 -0.5522 2.8525 26 6 8.5693 0.4822 2.6607 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3111 5.0278 0.2068 33 1 0.7443 1.1535 -2.3542 34 1 0.3850 2.7440 -1.6406 35 1 1.4120 2.6307 -3.0897 36 1 3.0183 0.2299 -2.2607 37 1 3.7788 1.7184 -2.8725 38 1 4.5726 1.3528 -0.1869 39 1 10.4141 -1.8760 1.2812 40 1 10.9368 -0.1740 1.1032 41 1 9.3187 -1.4565 3.3299 42 1 10.5220 -0.1279 3.4235 43 1 7.7983 0.3469 3.4192 44 1 8.9724 1.4940 2.7060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154336447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:40 Heat of formation + Delta-G solvation = 13.272317 kcal Electronic energy + Delta-G solvation = -25594.048985 eV Core-core repulsion = 22059.149794 eV Total energy + Delta-G solvation = -3534.899192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53712 -40.54645 -38.64759 -36.91974 -35.40913 -33.74245 -32.53678 -30.12846 -29.88580 -29.50358 -27.27327 -25.98871 -25.46673 -23.30946 -22.70420 -21.61425 -21.07257 -20.19826 -19.21497 -18.80743 -17.88018 -17.00280 -16.98337 -16.62892 -16.45807 -15.90016 -15.49590 -15.10453 -14.94019 -14.69508 -14.35567 -14.29849 -14.01773 -13.76423 -13.66883 -13.28897 -13.09775 -13.01332 -12.97478 -12.85826 -12.60929 -12.27757 -12.21800 -12.15269 -12.12627 -11.90608 -11.75183 -11.52745 -11.30160 -11.28043 -10.80450 -10.48994 -10.44403 -10.12295 -9.58937 -8.60629 -7.82171 -5.25279 -0.81494 -0.03774 0.66533 1.17221 1.47910 1.51348 1.56266 2.07498 2.15975 2.54757 2.78331 3.32807 3.47445 3.59399 3.66399 4.02454 4.14138 4.20092 4.39860 4.42935 4.49907 4.53686 4.68808 4.73371 4.80855 4.83798 4.88097 4.88940 4.89316 5.02266 5.07587 5.09436 5.16532 5.17787 5.29701 5.31707 5.37944 5.59107 5.73357 5.75394 5.91498 6.31525 6.47974 6.57180 7.00856 7.24043 7.93064 8.41948 9.22436 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.004260 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.751203 B = 6571.754221 C = 7937.010772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 N -0.591 5.591 4 C -0.256 4.256 5 H 0.056 0.944 6 C -0.032 4.032 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.283 1.283 10 H -0.297 1.297 11 H -0.283 1.283 12 C 0.182 3.818 13 H 0.072 0.928 14 C -0.131 4.131 15 C 0.110 3.890 16 N -0.678 5.678 17 C 0.589 3.411 18 O -0.568 6.568 19 C -0.042 4.042 20 N -0.438 5.438 21 C 0.002 3.998 22 C -0.255 4.255 23 S 0.277 5.723 24 C -0.036 4.036 25 C -0.104 4.104 26 C -0.046 4.046 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.248 0.752 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.426 -10.062 1.756 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 N -0.313 5.313 4 C -0.386 4.386 5 H 0.074 0.926 6 C -0.229 4.229 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.210 1.210 10 H -0.223 1.223 11 H -0.209 1.209 12 C 0.075 3.925 13 H 0.090 0.910 14 C -0.190 4.190 15 C -0.016 4.016 16 N -0.327 5.327 17 C 0.372 3.628 18 O -0.449 6.449 19 C -0.317 4.317 20 N -0.156 5.156 21 C -0.134 4.134 22 C -0.378 4.378 23 S 0.534 5.466 24 C -0.076 4.076 25 C -0.143 4.143 26 C -0.086 4.086 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.136 0.864 43 H 0.096 0.904 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.216 -10.443 0.187 20.137 hybrid contribution -0.441 1.516 1.849 2.432 sum 16.775 -8.927 2.036 19.111 Atomic orbital electron populations 1.22247 0.98669 0.99908 1.00641 1.20855 0.92692 0.86288 0.98557 1.44075 1.74160 1.10408 1.02654 1.19186 1.42011 0.89555 0.87885 0.92582 1.25497 0.99580 0.98515 0.99271 1.70122 1.43968 1.08104 1.33479 0.85662 0.78549 0.77596 0.80500 1.20983 1.22325 1.20884 1.20385 0.91710 0.95408 0.84997 0.90989 1.21947 0.99079 0.99944 0.98075 1.22099 0.86375 1.00627 0.92473 1.45789 1.16495 1.51262 1.19165 1.16983 0.81575 0.79070 0.85170 1.90768 1.81337 1.52713 1.20076 1.27093 1.01840 1.07709 0.95027 1.65911 1.24171 1.19974 1.05513 1.22387 0.88848 1.00824 1.01360 1.27649 1.05803 1.04919 0.99438 1.83468 1.08496 1.46165 1.08491 1.20995 0.90543 1.04258 0.91757 1.22386 0.97693 0.98786 0.95406 1.21129 0.97952 1.01672 0.87840 0.92240 0.95211 0.93630 0.93209 0.94912 0.94296 0.93722 0.93014 0.93384 0.91942 0.91550 0.74795 0.87960 0.87333 0.89695 0.86419 0.90402 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 10.02 71.98 0.72 -5.24 16 2 C 0.14 5.80 5.73 86.38 0.49 6.30 16 3 N -0.59 -27.51 1.84 -678.03 -1.25 -28.76 16 4 C -0.26 -13.33 9.50 84.04 0.80 -12.53 16 5 H 0.06 2.97 7.90 -2.91 -0.02 2.95 16 6 C -0.03 -1.67 4.84 84.86 0.41 -1.26 16 7 N -0.91 -50.07 10.24 21.65 0.22 -49.85 16 8 Si 0.95 44.07 29.59 68.60 2.03 46.10 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.18 8.07 1.93 44.99 0.09 8.16 16 13 H 0.07 3.69 5.93 -2.39 -0.01 3.68 16 14 C -0.13 -5.43 8.25 71.98 0.59 -4.83 16 15 C 0.11 4.33 4.85 86.38 0.42 4.75 16 16 N -0.68 -27.43 5.38 -466.53 -2.51 -29.94 16 17 C 0.59 23.04 7.81 86.62 0.68 23.71 16 18 O -0.57 -23.64 16.94 -4.08 -0.07 -23.71 16 19 C -0.04 -1.46 7.44 87.37 0.65 -0.81 16 20 N -0.44 -15.42 10.22 -175.37 -1.79 -17.21 16 21 C 0.00 0.04 7.62 42.29 0.32 0.37 16 22 C -0.25 -5.62 7.17 25.26 0.18 -5.44 16 23 S 0.28 7.05 23.03 -56.49 -1.30 5.75 16 24 C -0.04 -0.43 6.80 30.66 0.21 -0.22 16 25 C -0.10 -1.09 7.11 31.40 0.22 -0.86 16 26 C -0.05 -0.88 6.81 30.92 0.21 -0.67 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.78 6.03 -2.39 -0.01 1.76 16 30 H 0.05 1.91 6.35 -2.39 -0.02 1.89 16 31 H 0.03 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.04 1.69 6.50 -2.38 -0.02 1.67 16 34 H 0.05 2.46 7.22 -2.39 -0.02 2.45 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.42 6.76 -2.39 -0.02 2.40 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.42 18.11 7.73 -92.71 -0.72 17.39 16 39 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -63.92 366.69 1.63 -62.29 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.30 Total: 23.90 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.00 Total: 11.42 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -5.33 Total: -125.76 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.07 Total: -23.71 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.30 Total: 5.75 kcal Total: -63.92 1.63 -62.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154336447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.564 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds