Wall clock time and date at job start Tue Mar 31 2020 14:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47171 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46784 * 180.02562 * 10 9 8 12 12 C 1.46905 * 110.99539 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46802 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00125 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99672 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99923 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99785 * 359.97438 * 16 15 13 18 18 C 1.38941 * 120.00383 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00648 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99639 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46904 * 90.00193 * 20 18 16 22 22 H 1.48500 * 109.47277 * 209.99861 * 20 18 16 23 23 H 1.48502 * 109.47295 * 330.00307 * 20 18 16 24 24 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 25 25 C 1.50701 * 125.80425 * 180.02562 * 24 4 3 26 26 O 1.33661 * 108.39213 * 359.77210 * 24 4 3 27 27 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 30 30 H 1.07998 * 127.02387 * 359.93891 * 3 2 1 31 31 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 33 33 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 34 34 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 35 35 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 36 36 H 1.08998 * 109.47234 * 299.99857 * 10 9 8 37 37 H 1.08998 * 109.47204 * 60.00026 * 10 9 8 38 38 H 1.00901 * 111.00249 * 56.04908 * 11 10 9 39 39 H 1.08997 * 109.47268 * 300.00382 * 12 11 10 40 40 H 1.09001 * 109.47048 * 60.00108 * 12 11 10 41 41 H 0.97000 * 119.99580 * 0.02562 * 15 13 12 42 42 H 0.97002 * 120.00218 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46794 * 89.99963 * 25 24 4 44 44 H 1.08998 * 109.46574 * 209.99835 * 25 24 4 45 45 H 1.08994 * 109.46424 * 329.99461 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 6 6.9605 5.8889 -0.0021 11 7 6.6087 7.3152 -0.0024 12 6 7.8143 8.1547 -0.0021 13 6 7.4145 9.6077 -0.0030 14 8 6.2408 9.9138 -0.0035 15 7 8.3612 10.5671 -0.0034 16 6 7.9975 11.8890 -0.0037 17 1 6.9525 12.1615 -0.0041 18 6 8.9733 12.8780 -0.0047 19 7 8.6248 14.1451 -0.0055 20 14 10.7809 12.4066 -0.0047 21 1 11.2596 12.2807 -1.4049 22 1 11.5661 13.4554 0.6943 23 1 10.9541 11.1088 0.6962 24 6 3.5791 -0.7582 0.0015 25 6 4.7391 -1.7202 0.0030 26 8 2.2852 -1.0935 0.0065 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9596 2.1230 -0.0009 31 1 3.9576 3.1935 -0.0005 32 1 6.6347 3.3335 0.8889 33 1 6.6339 3.3328 -0.8910 34 1 5.0960 5.2775 -0.8919 35 1 5.0964 5.2787 0.8881 36 1 7.5462 5.6597 0.8881 37 1 7.5466 5.6587 -0.8918 38 1 6.0114 7.5405 0.7789 39 1 8.4057 7.9408 0.8881 40 1 8.4064 7.9406 -0.8918 41 1 9.2997 10.3222 -0.0034 42 1 9.3062 14.8355 -0.0058 43 1 5.0180 -1.9514 1.0310 44 1 4.4509 -2.6375 -0.5104 45 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154531029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:26 Heat of formation + Delta-G solvation = -66.604239 kcal Electronic energy + Delta-G solvation = -25326.127110 eV Core-core repulsion = 21345.011340 eV Total energy + Delta-G solvation = -3981.115770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01837 -39.70104 -38.51093 -36.64201 -34.96965 -33.92454 -33.60512 -33.29703 -31.73008 -31.39167 -29.85897 -27.44940 -25.78630 -24.80868 -23.56702 -22.76525 -21.80606 -21.23193 -19.85988 -19.35151 -18.32900 -17.58975 -16.92975 -16.48382 -16.17250 -16.06189 -15.78753 -15.39489 -14.91748 -14.74030 -14.35329 -14.20512 -13.96784 -13.80612 -13.72712 -13.40656 -13.31874 -13.20209 -13.07960 -12.90589 -12.82341 -12.37204 -12.16225 -11.99931 -11.92709 -11.69523 -11.53959 -11.19368 -11.02057 -10.59744 -10.25859 -10.18502 -9.97979 -9.57801 -9.36588 -8.79727 -8.60953 -8.20688 -8.15785 -6.31525 -3.83072 0.97788 1.57759 2.26966 2.90165 3.02458 3.05297 3.07063 3.15098 3.73438 3.99692 4.06680 4.10797 4.36585 4.40369 4.73567 4.75542 4.78074 4.83460 4.94098 4.98305 5.00987 5.05583 5.11613 5.18409 5.21740 5.31990 5.36006 5.44674 5.50806 5.56998 5.62749 5.75669 5.80064 5.89567 5.90641 5.94119 5.99909 6.16185 6.63294 7.06000 7.21525 7.54348 7.57989 7.93460 8.13935 8.59333 8.94441 9.41975 9.82132 10.81550 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030791 B = 0.001545 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.125653 B =18123.851942 C =18989.287754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.012 4.012 3 C -0.187 4.187 4 C -0.245 4.245 5 C 0.590 3.410 6 O -0.544 6.544 7 N -0.722 5.722 8 C 0.122 3.878 9 C -0.130 4.130 10 C 0.063 3.937 11 N -0.669 5.669 12 C 0.048 3.952 13 C 0.450 3.550 14 O -0.565 6.565 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.078 3.922 25 C -0.083 4.083 26 O -0.175 6.175 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.350 0.650 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.371 0.629 42 H 0.273 0.727 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.132 -32.082 0.870 33.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.206 4.206 4 C -0.249 4.249 5 C 0.379 3.621 6 O -0.423 6.423 7 N -0.373 5.373 8 C -0.002 4.002 9 C -0.168 4.168 10 C -0.067 4.067 11 N -0.302 5.302 12 C -0.085 4.085 13 C 0.235 3.765 14 O -0.447 6.447 15 N -0.230 5.230 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C 0.025 3.975 25 C -0.139 4.139 26 O -0.072 6.072 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.236 0.764 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.170 0.830 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.277 -32.245 0.193 33.844 hybrid contribution 1.410 0.265 0.920 1.704 sum -8.867 -31.980 1.113 33.205 Atomic orbital electron populations 1.20363 0.84571 1.04352 1.03838 1.22268 0.94056 0.83644 1.06031 1.22595 0.90693 0.99592 1.07757 1.21110 0.93797 0.93330 1.16690 1.17177 0.87366 0.81782 0.75819 1.90758 1.28814 1.71890 1.50829 1.45776 1.10264 1.05761 1.75470 1.21334 0.86436 0.89759 1.02650 1.21748 0.98970 0.92315 1.03773 1.21829 0.95923 0.88129 1.00850 1.60050 1.16896 1.01801 1.51454 1.21708 0.92443 0.92967 1.01380 1.19712 0.86563 0.86205 0.83991 1.90560 1.17725 1.82682 1.53756 1.42207 1.06915 1.06796 1.67068 1.19434 0.97030 0.78876 1.48115 0.86284 1.25037 0.98474 0.95005 0.97619 1.69621 1.34107 0.99045 1.49347 0.86667 0.85159 0.78596 0.78924 1.19580 1.20182 1.19525 1.22804 0.82914 0.94053 0.97707 1.20628 0.92095 0.96671 1.04466 1.83711 1.16182 1.35691 1.71613 0.89831 0.89008 0.90384 0.82515 0.76363 0.91322 0.91095 0.90031 0.91186 0.95174 0.90705 0.83017 0.93686 0.89399 0.79663 0.91608 0.89288 0.90378 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.40 36.01 0.37 0.10 16 2 C -0.01 -0.09 7.28 -35.74 -0.26 -0.35 16 3 C -0.19 -1.44 10.48 -37.45 -0.39 -1.83 16 4 C -0.24 -2.41 6.31 -103.28 -0.65 -3.06 16 5 C 0.59 6.55 7.81 -12.54 -0.10 6.46 16 6 O -0.54 -7.45 14.84 5.27 0.08 -7.37 16 7 N -0.72 -6.45 5.55 -61.40 -0.34 -6.79 16 8 C 0.12 1.11 5.67 -4.05 -0.02 1.08 16 9 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 10 C 0.06 0.69 5.69 -3.82 -0.02 0.66 16 11 N -0.67 -10.04 6.13 -115.05 -0.70 -10.75 16 12 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 13 C 0.45 10.20 7.82 -10.98 -0.09 10.11 16 14 O -0.57 -15.17 15.78 5.55 0.09 -15.08 16 15 N -0.59 -14.08 5.09 -10.97 -0.06 -14.13 16 16 C -0.31 -8.68 10.16 -14.94 -0.15 -8.83 16 17 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 20 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 24 C 0.08 0.73 7.37 -34.97 -0.26 0.47 16 25 C -0.08 -0.59 9.89 36.01 0.36 -0.23 16 26 O -0.18 -1.56 10.52 7.64 0.08 -1.48 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.16 0.81 7.74 -52.49 -0.41 0.41 16 31 H 0.40 2.73 7.64 -40.82 -0.31 2.42 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.11 0.93 6.48 -51.93 -0.34 0.59 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -35.71 384.09 -7.17 -42.88 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.67 Total: 12.20 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.49 Total: 5.07 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.33 Total: -56.65 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.25 Total: -23.93 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.71 -7.17 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154531029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.726 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds