Wall clock time and date at job start Tue Mar 31 2020 14:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47171 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46784 * 180.02562 * 10 9 8 12 12 C 1.46905 * 110.99539 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46802 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00125 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99672 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99923 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99785 * 359.97438 * 16 15 13 18 18 C 1.38941 * 120.00383 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00648 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99639 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46904 * 90.00193 * 20 18 16 22 22 H 1.48500 * 109.47277 * 209.99861 * 20 18 16 23 23 H 1.48502 * 109.47295 * 330.00307 * 20 18 16 24 24 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 25 25 C 1.50701 * 125.80425 * 180.02562 * 24 4 3 26 26 O 1.33661 * 108.39213 * 359.77210 * 24 4 3 27 27 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 30 30 H 1.07998 * 127.02387 * 359.93891 * 3 2 1 31 31 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 33 33 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 34 34 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 35 35 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 36 36 H 1.08998 * 109.47234 * 299.99857 * 10 9 8 37 37 H 1.08998 * 109.47204 * 60.00026 * 10 9 8 38 38 H 1.00901 * 111.00249 * 56.04908 * 11 10 9 39 39 H 1.08997 * 109.47268 * 300.00382 * 12 11 10 40 40 H 1.09001 * 109.47048 * 60.00108 * 12 11 10 41 41 H 0.97000 * 119.99580 * 0.02562 * 15 13 12 42 42 H 0.97002 * 120.00218 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46794 * 89.99963 * 25 24 4 44 44 H 1.08998 * 109.46574 * 209.99835 * 25 24 4 45 45 H 1.08994 * 109.46424 * 329.99461 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 6 6.9605 5.8889 -0.0021 11 7 6.6087 7.3152 -0.0024 12 6 7.8143 8.1547 -0.0021 13 6 7.4145 9.6077 -0.0030 14 8 6.2408 9.9138 -0.0035 15 7 8.3612 10.5671 -0.0034 16 6 7.9975 11.8890 -0.0037 17 1 6.9525 12.1615 -0.0041 18 6 8.9733 12.8780 -0.0047 19 7 8.6248 14.1451 -0.0055 20 14 10.7809 12.4066 -0.0047 21 1 11.2596 12.2807 -1.4049 22 1 11.5661 13.4554 0.6943 23 1 10.9541 11.1088 0.6962 24 6 3.5791 -0.7582 0.0015 25 6 4.7391 -1.7202 0.0030 26 8 2.2852 -1.0935 0.0065 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9596 2.1230 -0.0009 31 1 3.9576 3.1935 -0.0005 32 1 6.6347 3.3335 0.8889 33 1 6.6339 3.3328 -0.8910 34 1 5.0960 5.2775 -0.8919 35 1 5.0964 5.2787 0.8881 36 1 7.5462 5.6597 0.8881 37 1 7.5466 5.6587 -0.8918 38 1 6.0114 7.5405 0.7789 39 1 8.4057 7.9408 0.8881 40 1 8.4064 7.9406 -0.8918 41 1 9.2997 10.3222 -0.0034 42 1 9.3062 14.8355 -0.0058 43 1 5.0180 -1.9514 1.0310 44 1 4.4509 -2.6375 -0.5104 45 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154531029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:25 Heat of formation + Delta-G solvation = -95.134708 kcal Electronic energy + Delta-G solvation = -25327.364284 eV Core-core repulsion = 21345.011340 eV Total energy + Delta-G solvation = -3982.352944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.62946 -40.53354 -40.28732 -37.66643 -36.16011 -35.69379 -34.23088 -33.86532 -33.75124 -32.37133 -30.36271 -28.76191 -26.78622 -25.90229 -24.72164 -23.60926 -22.61925 -21.90884 -21.29113 -20.58946 -20.18704 -18.26710 -17.81466 -17.55920 -17.27043 -16.88096 -16.80429 -16.68925 -16.37007 -15.73064 -15.50101 -15.40064 -14.89758 -14.86005 -14.47449 -14.41077 -14.20031 -14.17036 -14.10401 -13.81615 -13.49496 -13.42085 -13.23969 -13.22888 -12.88912 -12.70526 -12.48390 -12.43301 -12.40163 -11.97483 -11.84832 -11.51282 -11.11765 -10.85082 -10.44477 -10.24798 -10.13270 -9.38270 -9.32982 -8.41275 -6.02363 0.27804 1.00545 1.30834 1.36284 1.45053 1.69986 1.95545 2.16681 2.23326 2.27328 2.76038 3.15094 3.41701 3.47742 3.74133 3.81508 4.00152 4.12497 4.17323 4.20860 4.26703 4.44510 4.44948 4.53272 4.56645 4.57883 4.59088 4.68251 4.70354 4.73150 4.78505 4.92842 5.02367 5.15392 5.19344 5.23142 5.38592 5.44830 5.52696 5.90386 6.03124 6.04553 6.39276 6.49955 6.59800 6.87939 7.15635 7.39743 7.96174 8.76282 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030791 B = 0.001545 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.125653 B =18123.851942 C =18989.287754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 C -0.195 4.195 4 C -0.267 4.267 5 C 0.586 3.414 6 O -0.577 6.577 7 N -0.712 5.712 8 C 0.128 3.872 9 C -0.117 4.117 10 C 0.064 3.936 11 N -0.688 5.688 12 C 0.061 3.939 13 C 0.447 3.553 14 O -0.615 6.615 15 N -0.591 5.591 16 C -0.331 4.331 17 H 0.055 0.945 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.258 1.258 22 H -0.275 1.275 23 H -0.231 1.231 24 C 0.066 3.934 25 C -0.080 4.080 26 O -0.183 6.183 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.179 0.821 31 H 0.413 0.587 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.345 0.655 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 -34.338 1.038 35.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.214 4.214 4 C -0.272 4.272 5 C 0.375 3.625 6 O -0.459 6.459 7 N -0.364 5.364 8 C 0.004 3.996 9 C -0.155 4.155 10 C -0.065 4.065 11 N -0.321 5.321 12 C -0.071 4.071 13 C 0.235 3.765 14 O -0.499 6.499 15 N -0.233 5.233 16 C -0.460 4.460 17 H 0.073 0.927 18 C -0.213 4.213 19 N -0.575 5.575 20 Si 0.785 3.215 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.154 1.154 24 C 0.013 3.987 25 C -0.136 4.136 26 O -0.081 6.081 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.196 0.804 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.164 0.836 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.931 -34.521 0.360 35.659 hybrid contribution 0.801 0.970 0.859 1.523 sum -8.130 -33.551 1.218 34.543 Atomic orbital electron populations 1.20547 0.81984 1.05550 1.04935 1.23004 0.95499 0.83110 1.04813 1.22875 0.89627 1.00891 1.07959 1.21231 0.94331 0.93772 1.17854 1.17418 0.87369 0.82338 0.75385 1.90732 1.30002 1.72569 1.52570 1.45708 1.10896 1.05223 1.74535 1.21240 0.86379 0.89643 1.02301 1.21601 0.98269 0.91765 1.03906 1.21898 0.96926 0.85738 1.01923 1.60052 1.16603 1.03788 1.51625 1.21637 0.93408 0.87989 1.04075 1.21018 0.85632 0.88723 0.81086 1.90538 1.20092 1.84134 1.55153 1.42036 1.08231 1.05225 1.67762 1.19020 0.94752 0.81765 1.50445 0.92657 1.26115 1.04885 0.94296 0.96015 1.69804 1.36619 1.00784 1.50251 0.85361 0.76225 0.79967 0.79934 1.18203 1.20031 1.15410 1.23168 0.83539 0.94452 0.97578 1.20636 0.91029 0.96975 1.04985 1.83723 1.16137 1.36528 1.71663 0.88666 0.87300 0.89685 0.80351 0.75085 0.91573 0.91583 0.90420 0.90577 0.93658 0.89916 0.83612 0.90469 0.86779 0.77436 0.91138 0.88543 0.88434 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.40 71.24 0.74 0.36 16 2 C -0.02 -0.22 7.28 24.76 0.18 -0.04 16 3 C -0.19 -2.74 10.48 23.65 0.25 -2.49 16 4 C -0.27 -5.17 6.31 -18.99 -0.12 -5.29 16 5 C 0.59 12.84 7.81 86.65 0.68 13.52 16 6 O -0.58 -15.93 14.84 -4.05 -0.06 -15.99 16 7 N -0.71 -11.97 5.55 -466.43 -2.59 -14.56 16 8 C 0.13 2.13 5.67 86.38 0.49 2.62 16 9 C -0.12 -1.87 5.59 30.59 0.17 -1.70 16 10 C 0.06 1.21 5.69 86.30 0.49 1.70 16 11 N -0.69 -19.13 6.13 -517.91 -3.17 -22.31 16 12 C 0.06 1.82 6.17 85.56 0.53 2.34 16 13 C 0.45 20.04 7.82 87.66 0.69 20.73 16 14 O -0.61 -33.91 15.78 -3.05 -0.05 -33.96 16 15 N -0.59 -27.75 5.09 -306.99 -1.56 -29.31 16 16 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 17 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 18 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 19 N -0.93 -56.30 13.96 21.66 0.30 -55.99 16 20 Si 0.97 38.63 27.74 68.60 1.90 40.54 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 23 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 24 C 0.07 1.21 7.37 25.26 0.19 1.39 16 25 C -0.08 -1.14 9.89 71.24 0.70 -0.43 16 26 O -0.18 -3.13 10.52 4.43 0.05 -3.09 16 27 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.18 1.51 7.74 -2.91 -0.02 1.48 16 31 H 0.41 5.01 7.64 -92.71 -0.71 4.30 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.35 10.17 8.43 -89.69 -0.76 9.41 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 42 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.66 6.48 -2.39 -0.02 1.64 16 Total: -1.00 -83.08 384.09 0.10 -82.98 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -1.02 Total: 37.85 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.30 Total: 13.85 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -7.02 Total: -122.17 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.06 Total: -53.04 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.90 Total: 40.54 kcal Total: -83.08 0.10 -82.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154531029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.156 kcal (2) G-P(sol) polarization free energy of solvation -83.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds