Wall clock time and date at job start Tue Mar 31 2020 13:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46915 * 2 1 4 4 C 1.36932 * 120.00238 * 275.90941 * 3 2 1 5 5 H 1.08003 * 119.99939 * 34.07382 * 4 3 2 6 6 C 1.38808 * 120.00512 * 214.07462 * 4 3 2 7 7 N 1.31621 * 120.00003 * 17.05199 * 6 4 3 8 8 Si 1.86798 * 120.00488 * 197.05175 * 6 4 3 9 9 H 1.48504 * 109.46851 * 59.99786 * 8 6 4 10 10 H 1.48499 * 109.47374 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47118 * 300.00010 * 8 6 4 12 12 C 1.46505 * 119.99996 * 95.91486 * 3 2 1 13 13 H 1.09004 * 109.47358 * 177.14450 * 12 3 2 14 14 C 1.52998 * 109.47164 * 57.14178 * 12 3 2 15 15 C 1.52995 * 109.47029 * 297.14484 * 12 3 2 16 16 N 1.46501 * 109.47283 * 305.00019 * 15 12 3 17 17 C 1.34773 * 120.00102 * 180.02562 * 16 15 12 18 18 O 1.21633 * 120.00248 * 359.97438 * 17 16 15 19 19 C 1.47270 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.33558 * 123.13973 * 0.02562 * 19 17 16 21 21 C 1.28654 * 115.76763 * 180.02562 * 20 19 17 22 22 S 1.70765 * 110.55774 * 359.97438 * 21 20 19 23 23 C 1.35207 * 123.14351 * 179.72847 * 19 17 16 24 24 C 1.50690 * 125.58645 * 0.02562 * 23 19 17 25 25 C 1.53004 * 117.50161 * 188.74563 * 24 23 19 26 26 C 1.52995 * 117.50364 * 120.08448 * 24 23 19 27 27 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47651 * 300.00390 * 1 2 3 29 29 H 1.09002 * 109.46826 * 60.00155 * 1 2 3 30 30 H 1.09002 * 109.46826 * 119.99845 * 2 1 3 31 31 H 1.08994 * 109.46955 * 239.99843 * 2 1 3 32 32 H 0.97003 * 120.00744 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47520 * 300.00484 * 14 12 3 34 34 H 1.09001 * 109.47269 * 60.00325 * 14 12 3 35 35 H 1.09003 * 109.47254 * 179.97438 * 14 12 3 36 36 H 1.09005 * 109.47685 * 64.99973 * 15 12 3 37 37 H 1.09001 * 109.47324 * 184.99776 * 15 12 3 38 38 H 0.96999 * 120.00035 * 359.97438 * 16 15 12 39 39 H 1.08004 * 124.71748 * 180.02562 * 21 20 19 40 40 H 1.09004 * 115.55321 * 334.41318 * 24 23 19 41 41 H 1.08996 * 117.49499 * 359.97438 * 25 24 23 42 42 H 1.09003 * 117.49723 * 145.01719 * 25 24 23 43 43 H 1.09001 * 117.50363 * 214.98181 * 26 24 23 44 44 H 1.09008 * 117.49789 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0674 -1.1795 5 1 1.4233 1.8925 -1.9761 6 6 3.1560 2.9879 -1.3516 7 7 4.1989 2.9695 -0.5488 8 14 3.0550 4.2528 -2.7224 9 1 1.8457 5.0935 -2.5320 10 1 4.2651 5.1131 -2.6924 11 1 2.9735 3.5579 -4.0322 12 6 2.3857 2.0283 1.2620 13 1 2.7713 3.0275 1.0593 14 6 3.4621 1.1993 1.9657 15 6 1.1519 2.1304 2.1609 16 7 0.0790 2.8210 1.4410 17 6 -1.1105 3.0272 2.0401 18 8 -1.2934 2.6395 3.1784 19 6 -2.1888 3.7220 1.3167 20 7 -2.0566 4.1731 0.0665 21 6 -3.0890 4.7597 -0.4285 22 16 -4.3656 4.7849 0.7055 23 6 -3.4069 3.9577 1.8539 24 6 -3.8461 3.5601 3.2394 25 6 -5.3257 3.7337 3.5887 26 6 -4.2810 4.6768 4.1905 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 4.9149 3.6129 -0.6687 33 1 3.0766 0.2002 2.1684 34 1 4.3412 1.1266 1.3254 35 1 3.7358 1.6810 2.9045 36 1 0.8190 1.1296 2.4362 37 1 1.4039 2.6900 3.0617 38 1 0.2250 3.1306 0.5334 39 1 -3.1413 5.1774 -1.4231 40 1 -3.3240 2.7063 3.6713 41 1 -5.9812 4.1359 2.8163 42 1 -5.7766 2.9942 4.2505 43 1 -4.0453 4.5577 5.2480 44 1 -4.2498 5.6993 3.8138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155221231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:34 Heat of formation + Delta-G solvation = 53.048947 kcal Electronic energy + Delta-G solvation = -26096.481798 eV Core-core repulsion = 22563.307451 eV Total energy + Delta-G solvation = -3533.174348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36932 -38.36914 -37.34958 -36.74665 -33.58788 -31.83218 -31.06146 -30.39302 -28.14785 -26.72836 -24.81376 -23.87505 -22.66251 -22.29149 -21.95484 -21.46568 -19.42762 -19.01506 -18.06484 -17.01536 -16.57429 -15.74940 -15.38137 -15.08945 -14.82013 -14.47384 -14.35434 -14.20365 -13.67222 -13.55184 -13.08960 -12.63637 -12.30240 -12.20309 -12.06541 -11.99706 -11.77684 -11.76595 -11.48525 -11.15045 -11.01211 -10.93259 -10.79633 -10.71877 -10.58499 -10.26544 -10.01407 -9.78087 -9.60154 -9.41790 -9.39593 -9.35477 -8.86919 -8.45126 -8.27933 -6.60191 -5.82379 -3.31579 0.51133 1.17038 1.58829 2.18654 3.37915 3.43577 3.46261 3.60192 3.79555 3.85890 4.23191 4.43800 4.48577 4.68789 4.83200 5.13777 5.22100 5.32365 5.40370 5.44610 5.51776 5.67187 5.88143 5.91319 5.99855 6.10771 6.15855 6.23450 6.29997 6.41345 6.51955 6.56997 6.65297 6.71527 6.85976 6.96589 7.10497 7.21747 7.45088 7.53547 7.59988 7.82882 8.26157 8.49975 8.76437 9.21754 9.83044 10.40256 11.23994 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.004345 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.102098 B = 6442.827834 C = 7470.031386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.174 3.826 13 H 0.102 0.898 14 C -0.143 4.143 15 C 0.100 3.900 16 N -0.679 5.679 17 C 0.583 3.417 18 O -0.553 6.553 19 C 0.010 3.990 20 N -0.424 5.424 21 C -0.003 4.003 22 S 0.177 5.823 23 C -0.154 4.154 24 C -0.081 4.081 25 C -0.180 4.180 26 C -0.161 4.161 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.254 0.746 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.421 0.579 39 H 0.204 0.796 40 H 0.149 0.851 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.657 3.353 5.215 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.209 1.209 12 C 0.066 3.934 13 H 0.120 0.880 14 C -0.202 4.202 15 C -0.025 4.025 16 N -0.328 5.328 17 C 0.366 3.634 18 O -0.433 6.433 19 C -0.124 4.124 20 N -0.138 5.138 21 C -0.303 4.303 22 S 0.433 5.567 23 C -0.278 4.278 24 C -0.101 4.101 25 C -0.217 4.217 26 C -0.199 4.199 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.260 0.740 39 H 0.220 0.780 40 H 0.167 0.833 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.026 3.511 5.561 18.252 hybrid contribution 0.826 0.443 -0.969 1.349 sum -16.200 3.953 4.592 17.296 Atomic orbital electron populations 1.22419 1.00091 0.98764 1.01509 1.20761 0.91596 0.87479 0.98712 1.43837 1.75856 1.08239 1.02277 1.19020 1.07554 1.18667 0.93584 0.92019 1.25131 0.94490 1.01274 0.97846 1.69992 1.07267 1.36396 1.39853 0.86479 0.76988 0.81761 0.82208 1.20743 1.21784 1.20916 1.20532 0.88984 0.99552 0.84338 0.87990 1.21991 1.01034 0.98096 0.99108 1.22263 0.89185 0.95647 0.95451 1.45856 1.11362 1.56143 1.19442 1.17038 0.81842 0.79302 0.85249 1.90683 1.81471 1.53388 1.17755 1.20531 0.95256 1.05539 0.91087 1.67030 1.27950 1.09408 1.09363 1.28372 0.92099 1.04509 1.05291 1.82618 1.18496 1.50719 1.04884 1.24749 0.97258 1.04446 1.01367 1.20685 0.97152 1.02933 0.89373 1.23160 0.91197 1.03434 1.03942 1.23063 1.02378 0.95261 0.99201 0.94954 0.93262 0.93442 0.94458 0.94111 0.93581 0.94979 0.90585 0.94703 0.92686 0.92850 0.74035 0.77982 0.83337 0.88785 0.87759 0.87788 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.95 37.16 0.37 -2.87 16 2 C 0.14 2.95 5.75 -4.04 -0.02 2.93 16 3 N -0.58 -13.53 1.88 -165.67 -0.31 -13.84 16 4 C -0.26 -6.66 9.07 -15.06 -0.14 -6.80 16 5 H 0.06 1.62 7.89 -52.48 -0.41 1.20 16 6 C 0.01 0.33 4.86 -17.43 -0.08 0.24 16 7 N -0.89 -24.21 10.90 55.49 0.61 -23.61 16 8 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.17 3.84 1.95 -67.93 -0.13 3.71 16 13 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 14 C -0.14 -2.95 9.05 37.16 0.34 -2.62 16 15 C 0.10 2.02 4.36 -4.04 -0.02 2.00 16 16 N -0.68 -13.72 4.28 -61.43 -0.26 -13.99 16 17 C 0.58 11.36 7.75 -12.59 -0.10 11.26 16 18 O -0.55 -11.31 14.16 5.25 0.07 -11.23 16 19 C 0.01 0.18 6.70 -84.52 -0.57 -0.39 16 20 N -0.42 -7.06 10.12 -12.36 -0.13 -7.18 16 21 C 0.00 -0.03 12.17 51.43 0.63 0.59 16 22 S 0.18 1.83 21.77 -107.50 -2.34 -0.51 16 23 C -0.15 -2.19 6.04 -35.39 -0.21 -2.40 16 24 C -0.08 -1.05 5.40 -91.78 -0.50 -1.54 16 25 C -0.18 -1.68 10.04 -26.69 -0.27 -1.95 16 26 C -0.16 -1.66 10.24 -26.70 -0.27 -1.93 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.98 5.32 -51.93 -0.28 0.71 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.74 6.29 -51.93 -0.33 0.42 16 31 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 33 H 0.03 0.61 6.56 -51.93 -0.34 0.27 16 34 H 0.08 1.77 7.69 -51.93 -0.40 1.37 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 1.12 6.98 -51.93 -0.36 0.75 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.42 9.16 7.26 -40.82 -0.30 8.86 16 39 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.15 2.25 6.17 -51.93 -0.32 1.93 16 41 H 0.09 0.78 7.28 -51.93 -0.38 0.41 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -28.95 366.17 -9.21 -38.16 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.36 Total: 10.44 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.98 Total: 0.24 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.09 Total: -58.62 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.34 Total: -0.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.95 -9.21 -38.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155221231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.209 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds