Wall clock time and date at job start Tue Mar 31 2020 13:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46915 * 2 1 4 4 C 1.36932 * 120.00238 * 275.90941 * 3 2 1 5 5 H 1.08003 * 119.99939 * 34.07382 * 4 3 2 6 6 C 1.38808 * 120.00512 * 214.07462 * 4 3 2 7 7 N 1.31621 * 120.00003 * 17.05199 * 6 4 3 8 8 Si 1.86798 * 120.00488 * 197.05175 * 6 4 3 9 9 H 1.48504 * 109.46851 * 59.99786 * 8 6 4 10 10 H 1.48499 * 109.47374 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47118 * 300.00010 * 8 6 4 12 12 C 1.46505 * 119.99996 * 95.91486 * 3 2 1 13 13 H 1.09004 * 109.47358 * 177.14450 * 12 3 2 14 14 C 1.52998 * 109.47164 * 57.14178 * 12 3 2 15 15 C 1.52995 * 109.47029 * 297.14484 * 12 3 2 16 16 N 1.46501 * 109.47283 * 305.00019 * 15 12 3 17 17 C 1.34773 * 120.00102 * 180.02562 * 16 15 12 18 18 O 1.21633 * 120.00248 * 359.97438 * 17 16 15 19 19 C 1.47270 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.33558 * 123.13973 * 0.02562 * 19 17 16 21 21 C 1.28654 * 115.76763 * 180.02562 * 20 19 17 22 22 S 1.70765 * 110.55774 * 359.97438 * 21 20 19 23 23 C 1.35207 * 123.14351 * 179.72847 * 19 17 16 24 24 C 1.50690 * 125.58645 * 0.02562 * 23 19 17 25 25 C 1.53004 * 117.50161 * 188.74563 * 24 23 19 26 26 C 1.52995 * 117.50364 * 120.08448 * 24 23 19 27 27 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47651 * 300.00390 * 1 2 3 29 29 H 1.09002 * 109.46826 * 60.00155 * 1 2 3 30 30 H 1.09002 * 109.46826 * 119.99845 * 2 1 3 31 31 H 1.08994 * 109.46955 * 239.99843 * 2 1 3 32 32 H 0.97003 * 120.00744 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47520 * 300.00484 * 14 12 3 34 34 H 1.09001 * 109.47269 * 60.00325 * 14 12 3 35 35 H 1.09003 * 109.47254 * 179.97438 * 14 12 3 36 36 H 1.09005 * 109.47685 * 64.99973 * 15 12 3 37 37 H 1.09001 * 109.47324 * 184.99776 * 15 12 3 38 38 H 0.96999 * 120.00035 * 359.97438 * 16 15 12 39 39 H 1.08004 * 124.71748 * 180.02562 * 21 20 19 40 40 H 1.09004 * 115.55321 * 334.41318 * 24 23 19 41 41 H 1.08996 * 117.49499 * 359.97438 * 25 24 23 42 42 H 1.09003 * 117.49723 * 145.01719 * 25 24 23 43 43 H 1.09001 * 117.50363 * 214.98181 * 26 24 23 44 44 H 1.09008 * 117.49789 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0674 -1.1795 5 1 1.4233 1.8925 -1.9761 6 6 3.1560 2.9879 -1.3516 7 7 4.1989 2.9695 -0.5488 8 14 3.0550 4.2528 -2.7224 9 1 1.8457 5.0935 -2.5320 10 1 4.2651 5.1131 -2.6924 11 1 2.9735 3.5579 -4.0322 12 6 2.3857 2.0283 1.2620 13 1 2.7713 3.0275 1.0593 14 6 3.4621 1.1993 1.9657 15 6 1.1519 2.1304 2.1609 16 7 0.0790 2.8210 1.4410 17 6 -1.1105 3.0272 2.0401 18 8 -1.2934 2.6395 3.1784 19 6 -2.1888 3.7220 1.3167 20 7 -2.0566 4.1731 0.0665 21 6 -3.0890 4.7597 -0.4285 22 16 -4.3656 4.7849 0.7055 23 6 -3.4069 3.9577 1.8539 24 6 -3.8461 3.5601 3.2394 25 6 -5.3257 3.7337 3.5887 26 6 -4.2810 4.6768 4.1905 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 4.9149 3.6129 -0.6687 33 1 3.0766 0.2002 2.1684 34 1 4.3412 1.1266 1.3254 35 1 3.7358 1.6810 2.9045 36 1 0.8190 1.1296 2.4362 37 1 1.4039 2.6900 3.0617 38 1 0.2250 3.1306 0.5334 39 1 -3.1413 5.1774 -1.4231 40 1 -3.3240 2.7063 3.6713 41 1 -5.9812 4.1359 2.8163 42 1 -5.7766 2.9942 4.2505 43 1 -4.0453 4.5577 5.2480 44 1 -4.2498 5.6993 3.8138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155221231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:33 Heat of formation + Delta-G solvation = 36.488011 kcal Electronic energy + Delta-G solvation = -26097.199934 eV Core-core repulsion = 22563.307451 eV Total energy + Delta-G solvation = -3533.892484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58144 -39.78482 -38.53128 -38.14319 -35.23067 -33.74488 -32.72583 -31.48105 -29.97166 -28.06575 -26.12671 -25.78788 -23.69270 -23.36885 -23.18042 -22.83084 -21.06764 -20.52383 -19.12974 -18.73728 -17.88109 -16.97754 -16.87501 -16.58682 -16.34855 -16.03406 -15.60495 -15.27647 -15.08266 -14.97394 -14.64094 -14.33469 -14.00920 -13.73201 -13.52388 -13.20128 -13.13405 -13.00720 -12.79919 -12.76961 -12.55041 -12.50803 -12.40389 -12.09856 -12.06836 -11.87985 -11.64203 -11.39204 -11.19324 -10.91245 -10.65287 -10.42637 -10.24712 -10.07453 -9.69374 -8.52033 -7.82090 -5.32832 -0.50984 0.23800 0.60179 1.00007 1.48553 1.51632 1.56865 2.33437 2.41454 2.54821 2.91556 3.20233 3.32079 3.47494 3.64951 3.79034 4.03673 4.08544 4.19451 4.25038 4.42223 4.54101 4.57841 4.63603 4.68105 4.77897 4.81137 4.88121 4.90243 4.94577 4.97172 5.03028 5.15643 5.17966 5.19188 5.28864 5.50685 5.56653 5.69244 5.75116 5.83832 6.40144 6.51073 6.75625 7.22014 7.26174 7.92356 8.44517 9.21222 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.004345 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.102098 B = 6442.827834 C = 7470.031386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.259 4.259 5 H 0.054 0.946 6 C -0.029 4.029 7 N -0.913 5.913 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.297 1.297 11 H -0.280 1.280 12 C 0.179 3.821 13 H 0.070 0.930 14 C -0.133 4.133 15 C 0.113 3.887 16 N -0.686 5.686 17 C 0.579 3.421 18 O -0.572 6.572 19 C -0.030 4.030 20 N -0.470 5.470 21 C -0.014 4.014 22 S 0.284 5.716 23 C -0.163 4.163 24 C -0.117 4.117 25 C -0.152 4.152 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.249 0.751 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.413 0.587 39 H 0.234 0.766 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.664 4.052 5.195 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 N -0.311 5.311 4 C -0.389 4.389 5 H 0.071 0.929 6 C -0.226 4.226 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.207 1.207 10 H -0.223 1.223 11 H -0.206 1.206 12 C 0.072 3.928 13 H 0.088 0.912 14 C -0.192 4.192 15 C -0.012 4.012 16 N -0.334 5.334 17 C 0.364 3.636 18 O -0.453 6.453 19 C -0.164 4.164 20 N -0.184 5.184 21 C -0.313 4.313 22 S 0.541 5.459 23 C -0.288 4.288 24 C -0.137 4.137 25 C -0.190 4.190 26 C -0.194 4.194 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.250 0.750 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.064 4.200 5.543 21.235 hybrid contribution 1.604 0.232 -0.934 1.870 sum -18.460 4.432 4.609 19.536 Atomic orbital electron populations 1.22221 0.98581 1.00035 1.00302 1.20832 0.92590 0.86267 0.98854 1.43941 1.76036 1.09154 1.02013 1.19111 1.06893 1.18822 0.94119 0.92878 1.25664 0.94427 1.02774 0.99779 1.70117 1.07661 1.36795 1.41167 0.85626 0.76459 0.79801 0.80212 1.20658 1.22312 1.20627 1.20389 0.90010 0.98024 0.84424 0.91246 1.21845 0.99347 0.98898 0.99095 1.22012 0.88557 0.95746 0.94929 1.45845 1.11872 1.56685 1.18998 1.17455 0.82045 0.78883 0.85206 1.90657 1.81904 1.54235 1.18529 1.20236 0.95697 1.08325 0.92143 1.66990 1.30401 1.11386 1.09637 1.28957 0.92202 1.03211 1.06966 1.82148 1.14964 1.47574 1.01226 1.25137 0.97262 1.03667 1.02685 1.20604 0.99959 1.03566 0.89592 1.23298 0.89253 1.02696 1.03706 1.23181 1.02050 0.95070 0.99057 0.92350 0.94155 0.94872 0.93258 0.94904 0.94218 0.93477 0.93414 0.92870 0.92680 0.92648 0.75020 0.74957 0.86338 0.87088 0.86190 0.87205 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 9.95 71.98 0.72 -5.08 16 2 C 0.14 5.87 5.75 86.38 0.50 6.37 16 3 N -0.59 -28.00 1.88 -678.05 -1.28 -29.28 16 4 C -0.26 -13.62 9.07 84.03 0.76 -12.86 16 5 H 0.05 2.85 7.89 -2.91 -0.02 2.82 16 6 C -0.03 -1.55 4.86 84.86 0.41 -1.13 16 7 N -0.91 -50.87 10.90 21.65 0.24 -50.64 16 8 Si 0.95 44.04 29.59 68.60 2.03 46.07 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 C 0.18 8.11 1.95 44.99 0.09 8.20 16 13 H 0.07 3.64 5.94 -2.38 -0.01 3.63 16 14 C -0.13 -5.52 9.05 71.98 0.65 -4.87 16 15 C 0.11 4.67 4.36 86.38 0.38 5.05 16 16 N -0.69 -28.68 4.28 -466.51 -1.99 -30.68 16 17 C 0.58 23.30 7.75 86.62 0.67 23.97 16 18 O -0.57 -24.17 14.16 -4.14 -0.06 -24.23 16 19 C -0.03 -1.04 6.70 40.56 0.27 -0.77 16 20 N -0.47 -15.54 10.12 -193.02 -1.95 -17.50 16 21 C -0.01 -0.33 12.17 130.71 1.59 1.26 16 22 S 0.28 4.95 21.77 -56.49 -1.23 3.72 16 23 C -0.16 -4.42 6.04 24.98 0.15 -4.27 16 24 C -0.12 -2.88 5.40 -11.54 -0.06 -2.95 16 25 C -0.15 -2.38 10.04 30.62 0.31 -2.07 16 26 C -0.16 -2.86 10.24 30.62 0.31 -2.55 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.60 5.32 -2.39 -0.01 1.59 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.93 6.29 -2.39 -0.02 1.92 16 31 H 0.03 1.41 8.09 -2.39 -0.02 1.40 16 32 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 33 H 0.05 1.78 6.56 -2.39 -0.02 1.76 16 34 H 0.05 2.25 7.69 -2.39 -0.02 2.23 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 2.25 6.98 -2.38 -0.02 2.24 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.41 18.70 7.26 -92.71 -0.67 18.02 16 39 H 0.23 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.12 3.67 6.17 -2.38 -0.01 3.66 16 41 H 0.11 1.35 7.28 -2.39 -0.02 1.33 16 42 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -65.18 366.17 2.85 -62.33 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.35 Total: 31.90 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.75 Total: 8.30 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -4.99 Total: -128.09 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.23 Total: 3.72 kcal Total: -65.18 2.85 -62.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155221231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.813 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds