Wall clock time and date at job start Tue Mar 31 2020 13:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47251 * 2 1 4 4 C 1.36929 * 119.99904 * 84.26818 * 3 2 1 5 5 H 1.08004 * 120.00490 * 28.85000 * 4 3 2 6 6 C 1.38817 * 120.00152 * 209.11957 * 4 3 2 7 7 N 1.31616 * 119.99704 * 18.62699 * 6 4 3 8 8 Si 1.86799 * 120.00010 * 198.62129 * 6 4 3 9 9 H 1.48500 * 109.46940 * 60.00497 * 8 6 4 10 10 H 1.48504 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47554 * 300.00380 * 8 6 4 12 12 C 1.46498 * 119.99936 * 264.27605 * 3 2 1 13 13 H 1.08995 * 109.47016 * 183.52300 * 12 3 2 14 14 C 1.53004 * 109.47324 * 63.52334 * 12 3 2 15 15 C 1.52998 * 109.47019 * 303.52177 * 12 3 2 16 16 N 1.46504 * 109.47148 * 305.00208 * 15 12 3 17 17 C 1.34776 * 119.99595 * 180.02562 * 16 15 12 18 18 O 1.21679 * 120.00450 * 359.97438 * 17 16 15 19 19 C 1.46688 * 119.99409 * 179.97438 * 17 16 15 20 20 S 1.76209 * 126.13102 * 359.68945 * 19 17 16 21 21 C 1.70951 * 90.31450 * 179.97438 * 20 19 17 22 22 N 1.29437 * 110.38995 * 0.34898 * 21 20 19 23 23 C 1.30940 * 117.36025 * 359.72409 * 22 21 20 24 24 C 1.50702 * 122.90043 * 179.97438 * 23 22 21 25 25 C 1.53005 * 117.49864 * 8.66671 * 24 23 22 26 26 C 1.52996 * 117.50152 * 300.04032 * 24 23 22 27 27 H 1.09000 * 109.47614 * 299.99974 * 1 2 3 28 28 H 1.09001 * 109.47226 * 60.00437 * 1 2 3 29 29 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47614 * 240.00025 * 2 1 3 31 31 H 1.09001 * 109.47226 * 119.99563 * 2 1 3 32 32 H 0.97001 * 120.00265 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46949 * 59.99619 * 14 12 3 34 34 H 1.08996 * 109.47024 * 179.97438 * 14 12 3 35 35 H 1.09005 * 109.47071 * 300.00031 * 14 12 3 36 36 H 1.09000 * 109.47346 * 65.00265 * 15 12 3 37 37 H 1.08999 * 109.47484 * 184.99926 * 15 12 3 38 38 H 0.96999 * 119.99841 * 359.97438 * 16 15 12 39 39 H 1.08000 * 124.80760 * 180.02562 * 21 20 19 40 40 H 1.09007 * 115.54705 * 154.36566 * 24 23 22 41 41 H 1.08994 * 117.49821 * 359.97438 * 25 24 23 42 42 H 1.09001 * 117.49698 * 145.02106 * 25 24 23 43 43 H 1.09002 * 117.49889 * 214.97734 * 26 24 23 44 44 H 1.08996 * 117.49822 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 1.1799 5 1 2.3292 1.5314 2.0979 6 6 1.9978 3.4475 1.1971 7 7 1.4072 4.0627 0.1946 8 14 2.6514 4.4330 2.6432 9 1 4.1152 4.2162 2.7687 10 1 2.3816 5.8763 2.4209 11 1 1.9767 3.9899 3.8896 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1416 2.1479 -2.1507 15 6 3.4439 1.1928 -1.9782 16 7 4.5830 0.9791 -1.0820 17 6 5.6457 0.2643 -1.5017 18 8 5.6589 -0.2040 -2.6247 19 6 6.7865 0.0509 -0.6046 20 16 6.9409 0.6581 1.0423 21 6 8.4780 -0.0773 1.1795 22 7 8.7863 -0.6862 0.0796 23 6 7.9147 -0.6435 -0.8966 24 6 8.1453 -1.3079 -2.2295 25 6 9.3628 -2.2252 -2.3604 26 6 9.3594 -0.8561 -3.0434 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3111 5.0278 0.2068 33 1 0.3850 2.7440 -1.6406 34 1 1.4120 2.6307 -3.0897 35 1 0.7443 1.1535 -2.3542 36 1 3.0183 0.2299 -2.2607 37 1 3.7788 1.7184 -2.8725 38 1 4.5726 1.3528 -0.1869 39 1 9.1055 -0.0352 2.0575 40 1 7.2453 -1.5839 -2.7791 41 1 9.9972 -2.3479 -1.4826 42 1 9.2640 -3.1050 -2.9962 43 1 9.2584 -0.8352 -4.1286 44 1 9.9912 -0.0780 -2.6151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155700393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:28 Heat of formation + Delta-G solvation = 54.884465 kcal Electronic energy + Delta-G solvation = -25763.411560 eV Core-core repulsion = 22230.316806 eV Total energy + Delta-G solvation = -3533.094754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39887 -38.89457 -36.92482 -36.44899 -33.84131 -31.91623 -31.23443 -30.30461 -28.35632 -26.62306 -25.05510 -23.96363 -22.84594 -22.31961 -21.67190 -21.15954 -19.61452 -18.89627 -17.96880 -17.13860 -16.58393 -15.80040 -15.41456 -15.10953 -14.82757 -14.54000 -14.35204 -14.24186 -13.83053 -13.62011 -13.30728 -12.75898 -12.43443 -12.27632 -11.95666 -11.63476 -11.59544 -11.50837 -11.43473 -11.31450 -11.07834 -10.82807 -10.76561 -10.51763 -10.36807 -10.34675 -9.96150 -9.93500 -9.62932 -9.55126 -9.52147 -9.48083 -8.76718 -8.57286 -8.46268 -6.78585 -5.91030 -3.34613 0.27684 1.22404 1.60762 2.43099 3.29406 3.36385 3.37475 3.37873 3.57879 3.96028 4.12183 4.39625 4.66432 4.88677 5.06332 5.18701 5.19596 5.25103 5.34317 5.50534 5.65074 5.80419 5.85180 6.04982 6.06607 6.10853 6.15632 6.27463 6.31548 6.41239 6.46685 6.52400 6.67186 6.68525 6.75410 6.93228 6.97770 7.24200 7.47256 7.55309 7.57610 7.73975 7.98017 8.36275 8.53599 9.11906 9.74312 10.28999 11.16105 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.004284 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.713819 B = 6533.946787 C = 7633.551600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.066 0.934 6 C 0.009 3.991 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.101 3.899 16 N -0.696 5.696 17 C 0.587 3.413 18 O -0.539 6.539 19 C -0.279 4.279 20 S 0.188 5.812 21 C 0.019 3.981 22 N -0.474 5.474 23 C 0.162 3.838 24 C -0.091 4.091 25 C -0.165 4.165 26 C -0.159 4.159 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.255 0.745 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.409 0.591 39 H 0.203 0.797 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.427 -7.111 -1.110 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.084 0.916 6 C -0.191 4.191 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.024 4.024 16 N -0.346 5.346 17 C 0.371 3.629 18 O -0.419 6.419 19 C -0.403 4.403 20 S 0.444 5.556 21 C -0.276 4.276 22 N -0.188 5.188 23 C 0.024 3.976 24 C -0.112 4.112 25 C -0.203 4.203 26 C -0.196 4.196 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.220 0.780 40 H 0.161 0.839 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.258 -6.873 -1.164 13.241 hybrid contribution 0.264 0.486 0.650 0.853 sum 11.522 -6.386 -0.515 13.183 Atomic orbital electron populations 1.22388 0.99713 0.98375 1.02112 1.20800 0.91988 0.87560 0.98118 1.44014 1.73803 1.09766 1.02952 1.19116 1.43404 0.89252 0.87299 0.91596 1.25035 0.98825 0.97841 0.97358 1.69997 1.42573 1.08675 1.32240 0.86505 0.79198 0.79301 0.82616 1.20858 1.21683 1.20900 1.20533 0.90941 0.96614 0.85022 0.87898 1.22116 1.00487 0.99600 0.98006 1.22206 0.86800 1.00804 0.92573 1.45889 1.17201 1.52511 1.18955 1.16704 0.81167 0.79259 0.85740 1.90723 1.80614 1.51112 1.19470 1.25625 1.02787 1.12218 0.99671 1.84460 1.15504 1.47761 1.07890 1.28640 0.99430 0.99140 1.00404 1.65966 1.32435 1.20515 0.99895 1.19673 0.87645 0.95447 0.94803 1.20870 0.95338 1.03138 0.91837 1.22972 1.00497 0.93658 1.03155 1.22896 0.99637 0.98272 0.98841 0.92887 0.93131 0.95354 0.94446 0.94583 0.93510 0.90026 0.95117 0.95117 0.92486 0.92361 0.75422 0.77994 0.83916 0.87937 0.88610 0.88279 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.02 37.15 0.37 -2.79 16 2 C 0.14 2.80 5.73 -4.04 -0.02 2.77 16 3 N -0.58 -12.76 1.84 -165.66 -0.30 -13.06 16 4 C -0.26 -6.31 9.50 -15.06 -0.14 -6.45 16 5 H 0.07 1.60 7.90 -52.48 -0.41 1.18 16 6 C 0.01 0.23 4.84 -17.43 -0.08 0.14 16 7 N -0.89 -23.05 10.24 55.49 0.57 -22.48 16 8 Si 0.89 19.82 29.59 -169.99 -5.03 14.79 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.18 3.69 1.93 -67.93 -0.13 3.56 16 13 H 0.10 2.46 5.93 -51.93 -0.31 2.15 16 14 C -0.14 -2.88 8.25 37.16 0.31 -2.57 16 15 C 0.10 1.91 4.86 -4.04 -0.02 1.89 16 16 N -0.70 -12.76 5.38 -61.62 -0.33 -13.09 16 17 C 0.59 10.62 7.78 -12.85 -0.10 10.52 16 18 O -0.54 -10.67 14.32 5.21 0.07 -10.59 16 19 C -0.28 -4.43 6.48 -37.09 -0.24 -4.67 16 20 S 0.19 2.44 22.35 -107.50 -2.40 0.03 16 21 C 0.02 0.21 12.22 51.75 0.63 0.85 16 22 N -0.47 -6.49 9.80 -11.53 -0.11 -6.60 16 23 C 0.16 2.45 6.42 -83.89 -0.54 1.92 16 24 C -0.09 -1.30 5.44 -91.77 -0.50 -1.80 16 25 C -0.17 -1.90 10.09 -26.72 -0.27 -2.17 16 26 C -0.16 -1.90 10.23 -26.73 -0.27 -2.17 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.98 6.03 -51.93 -0.31 0.67 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 31 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.08 1.88 7.22 -51.93 -0.37 1.50 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 36 H 0.06 1.09 6.76 -51.93 -0.35 0.74 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.41 7.65 7.26 -40.82 -0.30 7.36 16 39 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.14 2.24 6.17 -51.92 -0.32 1.92 16 41 H 0.10 1.20 7.74 -51.93 -0.40 0.80 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -27.13 367.95 -9.39 -36.52 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.38 Total: 9.89 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.01 Total: -0.95 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.18 Total: -55.24 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.40 Total: 0.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.13 -9.39 -36.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155700393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.403 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds