Wall clock time and date at job start Tue Mar 31 2020 13:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47251 * 2 1 4 4 C 1.36929 * 119.99904 * 84.26818 * 3 2 1 5 5 H 1.08004 * 120.00490 * 28.85000 * 4 3 2 6 6 C 1.38817 * 120.00152 * 209.11957 * 4 3 2 7 7 N 1.31616 * 119.99704 * 18.62699 * 6 4 3 8 8 Si 1.86799 * 120.00010 * 198.62129 * 6 4 3 9 9 H 1.48500 * 109.46940 * 60.00497 * 8 6 4 10 10 H 1.48504 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47554 * 300.00380 * 8 6 4 12 12 C 1.46498 * 119.99936 * 264.27605 * 3 2 1 13 13 H 1.08995 * 109.47016 * 183.52300 * 12 3 2 14 14 C 1.53004 * 109.47324 * 63.52334 * 12 3 2 15 15 C 1.52998 * 109.47019 * 303.52177 * 12 3 2 16 16 N 1.46504 * 109.47148 * 305.00208 * 15 12 3 17 17 C 1.34776 * 119.99595 * 180.02562 * 16 15 12 18 18 O 1.21679 * 120.00450 * 359.97438 * 17 16 15 19 19 C 1.46688 * 119.99409 * 179.97438 * 17 16 15 20 20 S 1.76209 * 126.13102 * 359.68945 * 19 17 16 21 21 C 1.70951 * 90.31450 * 179.97438 * 20 19 17 22 22 N 1.29437 * 110.38995 * 0.34898 * 21 20 19 23 23 C 1.30940 * 117.36025 * 359.72409 * 22 21 20 24 24 C 1.50702 * 122.90043 * 179.97438 * 23 22 21 25 25 C 1.53005 * 117.49864 * 8.66671 * 24 23 22 26 26 C 1.52996 * 117.50152 * 300.04032 * 24 23 22 27 27 H 1.09000 * 109.47614 * 299.99974 * 1 2 3 28 28 H 1.09001 * 109.47226 * 60.00437 * 1 2 3 29 29 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47614 * 240.00025 * 2 1 3 31 31 H 1.09001 * 109.47226 * 119.99563 * 2 1 3 32 32 H 0.97001 * 120.00265 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46949 * 59.99619 * 14 12 3 34 34 H 1.08996 * 109.47024 * 179.97438 * 14 12 3 35 35 H 1.09005 * 109.47071 * 300.00031 * 14 12 3 36 36 H 1.09000 * 109.47346 * 65.00265 * 15 12 3 37 37 H 1.08999 * 109.47484 * 184.99926 * 15 12 3 38 38 H 0.96999 * 119.99841 * 359.97438 * 16 15 12 39 39 H 1.08000 * 124.80760 * 180.02562 * 21 20 19 40 40 H 1.09007 * 115.54705 * 154.36566 * 24 23 22 41 41 H 1.08994 * 117.49821 * 359.97438 * 25 24 23 42 42 H 1.09001 * 117.49698 * 145.02106 * 25 24 23 43 43 H 1.09002 * 117.49889 * 214.97734 * 26 24 23 44 44 H 1.08996 * 117.49822 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 1.1799 5 1 2.3292 1.5314 2.0979 6 6 1.9978 3.4475 1.1971 7 7 1.4072 4.0627 0.1946 8 14 2.6514 4.4330 2.6432 9 1 4.1152 4.2162 2.7687 10 1 2.3816 5.8763 2.4209 11 1 1.9767 3.9899 3.8896 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1416 2.1479 -2.1507 15 6 3.4439 1.1928 -1.9782 16 7 4.5830 0.9791 -1.0820 17 6 5.6457 0.2643 -1.5017 18 8 5.6589 -0.2040 -2.6247 19 6 6.7865 0.0509 -0.6046 20 16 6.9409 0.6581 1.0423 21 6 8.4780 -0.0773 1.1795 22 7 8.7863 -0.6862 0.0796 23 6 7.9147 -0.6435 -0.8966 24 6 8.1453 -1.3079 -2.2295 25 6 9.3628 -2.2252 -2.3604 26 6 9.3594 -0.8561 -3.0434 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3111 5.0278 0.2068 33 1 0.3850 2.7440 -1.6406 34 1 1.4120 2.6307 -3.0897 35 1 0.7443 1.1535 -2.3542 36 1 3.0183 0.2299 -2.2607 37 1 3.7788 1.7184 -2.8725 38 1 4.5726 1.3528 -0.1869 39 1 9.1055 -0.0352 2.0575 40 1 7.2453 -1.5839 -2.7791 41 1 9.9972 -2.3479 -1.4826 42 1 9.2640 -3.1050 -2.9962 43 1 9.2584 -0.8352 -4.1286 44 1 9.9912 -0.0780 -2.6151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155700393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:27 Heat of formation + Delta-G solvation = 40.306554 kcal Electronic energy + Delta-G solvation = -25764.043706 eV Core-core repulsion = 22230.316806 eV Total energy + Delta-G solvation = -3533.726899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53028 -40.25896 -38.56458 -37.43044 -35.38007 -33.73225 -32.71428 -31.56134 -30.09633 -27.88169 -26.40748 -25.72275 -23.88569 -23.30133 -23.23343 -22.45809 -21.18294 -20.28094 -19.05783 -18.77244 -17.88723 -17.06424 -16.78279 -16.56935 -16.33936 -15.96921 -15.60334 -15.36713 -15.24058 -15.02082 -14.70088 -14.36018 -14.03158 -13.66448 -13.33406 -13.26338 -13.09183 -12.98654 -12.84416 -12.64437 -12.50338 -12.39084 -12.16950 -12.12647 -11.74850 -11.71894 -11.41394 -11.28662 -11.26286 -11.10274 -10.69640 -10.63113 -10.42017 -10.03297 -9.70694 -8.59248 -7.79715 -5.23860 -0.78655 0.18673 0.58798 1.35337 1.52566 1.55581 1.59887 2.06395 2.20630 2.57584 2.98212 3.14951 3.35277 3.61935 3.65617 3.90627 3.97163 4.13380 4.22900 4.25753 4.44670 4.48542 4.52169 4.71904 4.75277 4.83131 4.87741 4.89565 4.90453 5.02729 5.05791 5.08915 5.17157 5.22442 5.29940 5.33707 5.45539 5.60454 5.75840 5.76117 5.92235 6.45451 6.49850 6.58932 7.11597 7.25729 7.94598 8.44860 9.25005 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.004284 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.713819 B = 6533.946787 C = 7633.551600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.064 0.936 6 C -0.032 4.032 7 N -0.914 5.914 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.302 1.302 11 H -0.284 1.284 12 C 0.183 3.817 13 H 0.074 0.926 14 C -0.132 4.132 15 C 0.114 3.886 16 N -0.698 5.698 17 C 0.588 3.412 18 O -0.563 6.563 19 C -0.319 4.319 20 S 0.192 5.808 21 C 0.050 3.950 22 N -0.491 5.491 23 C 0.168 3.832 24 C -0.122 4.122 25 C -0.145 4.145 26 C -0.151 4.151 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.247 0.753 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.250 0.750 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.276 -8.285 -0.290 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.082 0.918 6 C -0.230 4.230 7 N -0.558 5.558 8 Si 0.774 3.226 9 H -0.197 1.197 10 H -0.229 1.229 11 H -0.210 1.210 12 C 0.075 3.925 13 H 0.092 0.908 14 C -0.191 4.191 15 C -0.012 4.012 16 N -0.348 5.348 17 C 0.374 3.626 18 O -0.445 6.445 19 C -0.443 4.443 20 S 0.448 5.552 21 C -0.245 4.245 22 N -0.205 5.205 23 C 0.030 3.970 24 C -0.142 4.142 25 C -0.182 4.182 26 C -0.189 4.189 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.266 0.734 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.110 -8.066 -0.334 15.396 hybrid contribution -0.247 0.783 0.434 0.928 sum 12.863 -7.283 0.100 14.782 Atomic orbital electron populations 1.22256 0.98947 0.99809 1.00556 1.20868 0.92500 0.86413 0.98682 1.44106 1.74157 1.10347 1.02672 1.19276 1.42267 0.89460 0.87964 0.91814 1.25562 0.99520 0.98649 0.99230 1.70138 1.43929 1.08109 1.33667 0.85695 0.79215 0.77376 0.80292 1.19660 1.22898 1.21000 1.20370 0.91598 0.95458 0.85038 0.90817 1.21954 0.99304 0.99775 0.98089 1.21957 0.86548 1.00249 0.92416 1.45850 1.17306 1.52934 1.18683 1.16957 0.81428 0.78418 0.85787 1.90699 1.81210 1.51990 1.20621 1.25391 1.02751 1.14950 1.01231 1.84424 1.16744 1.47965 1.06051 1.29466 0.98452 0.95866 1.00666 1.66051 1.32223 1.21845 1.00372 1.19897 0.87430 0.94319 0.95351 1.20847 0.95642 1.05597 0.92141 1.23032 0.98087 0.93936 1.03124 1.22963 0.97879 0.98695 0.99338 0.95118 0.93899 0.92399 0.93436 0.94380 0.94367 0.93060 0.93654 0.93944 0.92466 0.92162 0.75676 0.73442 0.85989 0.87815 0.86778 0.87116 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.79 10.02 71.98 0.72 -5.06 16 2 C 0.14 5.46 5.73 86.38 0.49 5.95 16 3 N -0.59 -25.86 1.84 -678.03 -1.25 -27.11 16 4 C -0.26 -12.55 9.50 84.04 0.80 -11.75 16 5 H 0.06 3.07 7.90 -2.91 -0.02 3.05 16 6 C -0.03 -1.62 4.84 84.86 0.41 -1.21 16 7 N -0.91 -48.24 10.24 21.65 0.22 -48.01 16 8 Si 0.94 40.85 29.59 68.60 2.03 42.88 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.18 7.72 1.93 44.99 0.09 7.81 16 13 H 0.07 3.60 5.93 -2.39 -0.01 3.59 16 14 C -0.13 -5.33 8.25 71.98 0.59 -4.74 16 15 C 0.11 4.30 4.86 86.38 0.42 4.72 16 16 N -0.70 -25.76 5.38 -467.08 -2.51 -28.28 16 17 C 0.59 21.46 7.78 86.45 0.67 22.13 16 18 O -0.56 -22.67 14.32 -4.28 -0.06 -22.73 16 19 C -0.32 -10.01 6.48 23.88 0.15 -9.85 16 20 S 0.19 4.66 22.35 -56.49 -1.26 3.40 16 21 C 0.05 0.96 12.22 130.60 1.60 2.56 16 22 N -0.49 -12.30 9.80 -190.40 -1.87 -14.17 16 23 C 0.17 4.94 6.42 42.09 0.27 5.21 16 24 C -0.12 -3.37 5.44 -11.54 -0.06 -3.44 16 25 C -0.14 -3.04 10.09 30.60 0.31 -2.73 16 26 C -0.15 -3.39 10.23 30.60 0.31 -3.08 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.63 6.03 -2.39 -0.01 1.62 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.74 6.35 -2.39 -0.02 1.73 16 31 H 0.04 1.45 8.09 -2.39 -0.02 1.43 16 32 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 33 H 0.05 2.39 7.22 -2.39 -0.02 2.38 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.58 6.50 -2.38 -0.02 1.56 16 36 H 0.06 2.16 6.76 -2.39 -0.02 2.14 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.41 15.32 7.26 -92.71 -0.67 14.65 16 39 H 0.25 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.12 3.90 6.17 -2.38 -0.01 3.88 16 41 H 0.10 2.18 7.74 -2.39 -0.02 2.16 16 42 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -59.02 367.95 2.43 -56.59 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.35 Total: 30.91 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.78 Total: 6.51 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -5.41 Total: -117.57 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.06 Total: -22.73 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.26 Total: 3.40 kcal Total: -59.02 2.43 -56.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155700393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.898 kcal (2) G-P(sol) polarization free energy of solvation -59.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds