Wall clock time and date at job start Tue Mar 31 2020 14:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35124 * 125.61662 * 2 1 4 4 C 1.40368 * 107.11650 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.64396 * 180.02562 * 4 3 2 6 6 C 1.36544 * 106.70703 * 0.02562 * 4 3 2 7 7 C 1.46656 * 125.98722 * 179.97438 * 6 4 3 8 8 O 1.21690 * 119.99825 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99952 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47473 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47496 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00306 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47559 * 180.02562 * 14 13 12 16 16 O 1.21298 * 119.99680 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00644 * 179.97438 * 15 14 13 18 18 C 1.37087 * 120.00226 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00489 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99900 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99938 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47281 * 60.00380 * 22 20 18 24 24 H 1.48495 * 109.47229 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47194 * 300.00421 * 22 20 18 26 26 O 1.33931 * 125.61469 * 180.27322 * 2 1 3 27 27 H 1.08996 * 109.47423 * 89.99634 * 1 2 3 28 28 H 1.09007 * 109.46828 * 209.99697 * 1 2 3 29 29 H 1.08998 * 109.46696 * 329.99349 * 1 2 3 30 30 H 1.08001 * 126.44311 * 0.03147 * 3 2 1 31 31 H 1.08999 * 109.47538 * 269.95528 * 5 4 3 32 32 H 1.08996 * 109.47572 * 29.96325 * 5 4 3 33 33 H 1.09000 * 109.47152 * 149.95920 * 5 4 3 34 34 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47024 * 300.00478 * 10 9 7 36 36 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 37 37 H 1.09000 * 109.47250 * 300.00222 * 11 10 9 38 38 H 1.09004 * 109.46862 * 60.00198 * 11 10 9 39 39 H 1.09000 * 109.46870 * 300.00218 * 12 11 10 40 40 H 1.08996 * 109.47261 * 59.99829 * 12 11 10 41 41 H 1.00904 * 111.00138 * 56.04655 * 13 12 11 42 42 H 1.09004 * 109.47349 * 299.99850 * 14 13 12 43 43 H 1.09002 * 109.47087 * 59.99867 * 14 13 12 44 44 H 0.96999 * 119.99691 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99608 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 4.8617 1.5143 -0.0003 6 6 3.5823 -0.7117 -0.0015 7 6 4.7415 -1.6102 -0.0029 8 8 5.8680 -1.1499 -0.0029 9 7 4.5590 -2.9455 -0.0043 10 6 5.7168 -3.8431 -0.0062 11 6 5.2362 -5.2955 -0.0081 12 6 6.4454 -6.2329 -0.0095 13 7 5.9840 -7.6275 -0.0119 14 6 7.1205 -8.5581 -0.0139 15 6 6.6092 -9.9757 -0.0170 16 8 5.4152 -10.1897 -0.0170 17 7 7.4783 -11.0058 -0.0197 18 6 7.0131 -12.2953 -0.0220 19 1 5.9501 -12.4859 -0.0220 20 6 7.9093 -13.3572 -0.0254 21 7 9.2028 -13.1253 -0.0259 22 14 7.2754 -15.1143 -0.0292 23 1 6.4479 -15.3395 -1.2416 24 1 8.4243 -16.0551 -0.0319 25 1 6.4498 -15.3454 1.1834 26 8 2.2869 -1.0888 -0.0052 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3632 0.8899 0.5139 30 1 1.9613 2.1260 0.0005 31 1 5.1601 1.7221 -1.0278 32 1 4.6512 2.4522 0.5136 33 1 5.6684 0.9916 0.5136 34 1 3.6610 -3.3123 -0.0047 35 1 6.3180 -3.6585 -0.8965 36 1 6.3195 -3.6606 0.8835 37 1 4.6347 -5.4804 0.8819 38 1 4.6338 -5.4778 -0.8981 39 1 7.0472 -6.0482 -0.8993 40 1 7.0475 -6.0506 0.8806 41 1 5.3710 -7.8043 -0.7937 42 1 7.7269 -8.3892 -0.9038 43 1 7.7274 -8.3923 0.8762 44 1 8.4331 -10.8346 -0.0201 45 1 9.8284 -13.8667 -0.0279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156313713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:09 Heat of formation + Delta-G solvation = -72.360908 kcal Electronic energy + Delta-G solvation = -25331.330345 eV Core-core repulsion = 21349.964947 eV Total energy + Delta-G solvation = -3981.365398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.12793 -39.76583 -38.31637 -36.63504 -35.12812 -34.33726 -33.83425 -32.93055 -31.53577 -31.12397 -28.36218 -28.09677 -26.71360 -24.78519 -23.31529 -22.01901 -21.74336 -21.56890 -19.96397 -19.22796 -18.39338 -17.86348 -16.97264 -16.53607 -16.15270 -15.83463 -15.70170 -15.29855 -14.66306 -14.60006 -14.31201 -14.20301 -14.03150 -13.61464 -13.55739 -13.47780 -13.36835 -13.32608 -13.05732 -12.85776 -12.76426 -12.08702 -12.02638 -11.85893 -11.81634 -11.47261 -11.43009 -11.07489 -10.94303 -10.44196 -10.42852 -10.20981 -10.04626 -9.49839 -9.48816 -8.79673 -8.47231 -8.07513 -7.95800 -6.41313 -3.82248 0.66415 1.89808 2.21669 2.84205 2.84909 3.20484 3.26186 3.30585 3.91071 4.07482 4.11646 4.29670 4.38147 4.43010 4.79605 4.79962 4.90386 4.93214 4.99076 5.03409 5.11439 5.16838 5.23147 5.26106 5.38153 5.40086 5.42941 5.47954 5.60552 5.70271 5.76502 5.79558 5.92682 5.98081 6.00272 6.05192 6.13200 6.27086 6.47931 7.12975 7.19001 7.55282 7.64029 7.75846 8.06347 8.61616 9.17994 9.54561 10.06066 10.76301 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.001504 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.435153 B =18607.129650 C =19448.882417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 C -0.225 4.225 4 C -0.081 4.081 5 C -0.096 4.096 6 C -0.091 4.091 7 C 0.604 3.396 8 O -0.519 6.519 9 N -0.719 5.719 10 C 0.120 3.880 11 C -0.130 4.130 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 O -0.162 6.162 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.620 29.561 -0.818 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.244 4.244 4 C -0.084 4.084 5 C -0.152 4.152 6 C -0.143 4.143 7 C 0.390 3.610 8 O -0.397 6.397 9 N -0.370 5.370 10 C -0.003 4.003 11 C -0.168 4.168 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.469 6.469 17 N -0.200 5.200 18 C -0.431 4.431 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.759 3.241 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 O -0.059 6.059 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.173 0.827 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.241 0.759 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.590 29.222 -0.137 31.436 hybrid contribution 0.244 -0.753 -0.919 1.213 sum -11.345 28.469 -1.056 30.665 Atomic orbital electron populations 1.20440 0.84431 1.04645 1.04089 1.22798 0.94296 0.84046 1.01670 1.21488 0.91851 0.99857 1.11240 1.20633 0.96407 0.92190 0.99156 1.20440 0.93851 0.97958 1.02970 1.21788 0.81901 0.94136 1.16431 1.16492 0.86042 0.81477 0.76959 1.90856 1.22086 1.75947 1.50840 1.45912 1.11049 1.05420 1.74577 1.21410 0.87643 0.88336 1.02925 1.21751 0.99189 0.92052 1.03833 1.21820 0.95697 0.88331 1.00884 1.60051 1.17924 1.00934 1.51305 1.21671 0.92813 0.92422 1.01298 1.19812 0.87226 0.85899 0.84512 1.90519 1.15738 1.85122 1.55483 1.41853 1.08497 1.05307 1.64308 1.19662 0.94548 0.81085 1.47771 0.87965 1.25266 0.94962 1.00402 0.97278 1.69607 1.01031 1.33176 1.50468 0.85907 0.77944 0.81231 0.79061 1.19931 1.20974 1.19885 1.83997 1.15858 1.34801 1.71227 0.89459 0.89974 0.88878 0.82694 0.90724 0.91428 0.89413 0.75880 0.91022 0.90778 0.90008 0.91149 0.95180 0.90696 0.83178 0.93804 0.89521 0.77432 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.41 36.01 0.37 0.10 16 2 C 0.02 0.18 7.31 -35.41 -0.26 -0.08 16 3 C -0.23 -1.72 10.73 -39.89 -0.43 -2.15 16 4 C -0.08 -0.78 6.20 -104.44 -0.65 -1.43 16 5 C -0.10 -0.81 9.81 36.00 0.35 -0.45 16 6 C -0.09 -0.97 7.13 -36.80 -0.26 -1.23 16 7 C 0.60 6.96 7.79 -12.86 -0.10 6.86 16 8 O -0.52 -7.21 14.74 5.20 0.08 -7.14 16 9 N -0.72 -6.83 5.55 -61.63 -0.34 -7.18 16 10 C 0.12 1.13 5.67 -4.05 -0.02 1.11 16 11 C -0.13 -1.25 5.59 -26.74 -0.15 -1.40 16 12 C 0.06 0.73 5.68 -3.83 -0.02 0.71 16 13 N -0.67 -10.65 6.13 -115.06 -0.70 -11.35 16 14 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.46 7.82 -10.99 -0.09 10.38 16 16 O -0.58 -15.96 15.78 5.54 0.09 -15.87 16 17 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 18 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 22 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 O -0.16 -1.53 10.40 4.99 0.05 -1.48 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.88 6.45 -51.93 -0.33 0.55 16 34 H 0.41 3.20 8.23 -40.82 -0.34 2.87 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.35 5.68 8.43 -39.29 -0.33 5.34 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -33.97 387.67 -7.62 -41.59 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.75 Total: 12.61 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.52 Total: 5.20 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.38 Total: -56.83 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.22 Total: -24.49 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.97 -7.62 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156313713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.772 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds