Wall clock time and date at job start Tue Mar 31 2020 14:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35124 * 125.61662 * 2 1 4 4 C 1.40368 * 107.11650 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.64396 * 180.02562 * 4 3 2 6 6 C 1.36544 * 106.70703 * 0.02562 * 4 3 2 7 7 C 1.46656 * 125.98722 * 179.97438 * 6 4 3 8 8 O 1.21690 * 119.99825 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99952 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47473 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47496 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00306 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47559 * 180.02562 * 14 13 12 16 16 O 1.21298 * 119.99680 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00644 * 179.97438 * 15 14 13 18 18 C 1.37087 * 120.00226 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00489 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99900 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99938 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47281 * 60.00380 * 22 20 18 24 24 H 1.48495 * 109.47229 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47194 * 300.00421 * 22 20 18 26 26 O 1.33931 * 125.61469 * 180.27322 * 2 1 3 27 27 H 1.08996 * 109.47423 * 89.99634 * 1 2 3 28 28 H 1.09007 * 109.46828 * 209.99697 * 1 2 3 29 29 H 1.08998 * 109.46696 * 329.99349 * 1 2 3 30 30 H 1.08001 * 126.44311 * 0.03147 * 3 2 1 31 31 H 1.08999 * 109.47538 * 269.95528 * 5 4 3 32 32 H 1.08996 * 109.47572 * 29.96325 * 5 4 3 33 33 H 1.09000 * 109.47152 * 149.95920 * 5 4 3 34 34 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47024 * 300.00478 * 10 9 7 36 36 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 37 37 H 1.09000 * 109.47250 * 300.00222 * 11 10 9 38 38 H 1.09004 * 109.46862 * 60.00198 * 11 10 9 39 39 H 1.09000 * 109.46870 * 300.00218 * 12 11 10 40 40 H 1.08996 * 109.47261 * 59.99829 * 12 11 10 41 41 H 1.00904 * 111.00138 * 56.04655 * 13 12 11 42 42 H 1.09004 * 109.47349 * 299.99850 * 14 13 12 43 43 H 1.09002 * 109.47087 * 59.99867 * 14 13 12 44 44 H 0.96999 * 119.99691 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99608 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 4.8617 1.5143 -0.0003 6 6 3.5823 -0.7117 -0.0015 7 6 4.7415 -1.6102 -0.0029 8 8 5.8680 -1.1499 -0.0029 9 7 4.5590 -2.9455 -0.0043 10 6 5.7168 -3.8431 -0.0062 11 6 5.2362 -5.2955 -0.0081 12 6 6.4454 -6.2329 -0.0095 13 7 5.9840 -7.6275 -0.0119 14 6 7.1205 -8.5581 -0.0139 15 6 6.6092 -9.9757 -0.0170 16 8 5.4152 -10.1897 -0.0170 17 7 7.4783 -11.0058 -0.0197 18 6 7.0131 -12.2953 -0.0220 19 1 5.9501 -12.4859 -0.0220 20 6 7.9093 -13.3572 -0.0254 21 7 9.2028 -13.1253 -0.0259 22 14 7.2754 -15.1143 -0.0292 23 1 6.4479 -15.3395 -1.2416 24 1 8.4243 -16.0551 -0.0319 25 1 6.4498 -15.3454 1.1834 26 8 2.2869 -1.0888 -0.0052 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3632 0.8899 0.5139 30 1 1.9613 2.1260 0.0005 31 1 5.1601 1.7221 -1.0278 32 1 4.6512 2.4522 0.5136 33 1 5.6684 0.9916 0.5136 34 1 3.6610 -3.3123 -0.0047 35 1 6.3180 -3.6585 -0.8965 36 1 6.3195 -3.6606 0.8835 37 1 4.6347 -5.4804 0.8819 38 1 4.6338 -5.4778 -0.8981 39 1 7.0472 -6.0482 -0.8993 40 1 7.0475 -6.0506 0.8806 41 1 5.3710 -7.8043 -0.7937 42 1 7.7269 -8.3892 -0.9038 43 1 7.7274 -8.3923 0.8762 44 1 8.4331 -10.8346 -0.0201 45 1 9.8284 -13.8667 -0.0279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156313713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:08 Heat of formation + Delta-G solvation = -98.183284 kcal Electronic energy + Delta-G solvation = -25332.450088 eV Core-core repulsion = 21349.964947 eV Total energy + Delta-G solvation = -3982.485140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.76649 -40.62085 -40.15259 -37.71032 -36.24421 -35.76533 -35.02769 -33.47766 -33.27938 -32.39139 -29.10650 -28.89768 -27.91061 -26.33459 -24.56410 -22.70072 -22.63444 -22.26575 -21.10090 -20.62638 -19.90839 -19.13223 -17.87923 -17.65898 -17.24333 -17.06025 -16.59738 -16.35650 -16.30532 -15.94067 -15.45245 -15.37605 -15.06992 -14.79400 -14.52479 -14.32422 -14.08961 -14.02218 -13.71072 -13.63705 -13.54976 -13.37780 -13.26165 -13.19619 -12.86150 -12.73039 -12.60101 -12.44791 -12.42859 -12.11954 -11.88343 -11.50261 -11.29138 -10.67952 -10.36003 -10.30454 -10.02149 -9.43747 -9.34007 -8.46674 -5.95779 -0.04736 1.29773 1.40203 1.42147 1.53194 1.56562 2.02958 2.04786 2.10830 2.29863 2.93675 3.20535 3.51332 3.56677 3.75958 3.80581 3.97733 4.10931 4.15662 4.33171 4.43713 4.48046 4.48225 4.54544 4.56235 4.58119 4.66553 4.70844 4.71899 4.74031 4.77561 4.96885 5.07568 5.14459 5.16133 5.24206 5.29976 5.40508 5.49264 5.83978 5.87885 6.09269 6.36458 6.40949 6.59742 6.95038 7.12030 7.55726 8.10894 8.70381 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.001504 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.435153 B =18607.129650 C =19448.882417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.028 3.972 3 C -0.234 4.234 4 C -0.089 4.089 5 C -0.094 4.094 6 C -0.123 4.123 7 C 0.600 3.400 8 O -0.552 6.552 9 N -0.711 5.711 10 C 0.127 3.873 11 C -0.117 4.117 12 C 0.064 3.936 13 N -0.685 5.685 14 C 0.064 3.936 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.337 4.337 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.272 1.272 26 O -0.172 6.172 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.182 0.818 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.345 0.655 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 30.590 -0.937 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 C -0.252 4.252 4 C -0.092 4.092 5 C -0.150 4.150 6 C -0.174 4.174 7 C 0.388 3.612 8 O -0.433 6.433 9 N -0.362 5.362 10 C 0.003 3.997 11 C -0.155 4.155 12 C -0.065 4.065 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.467 4.467 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.197 1.197 26 O -0.069 6.069 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.199 0.801 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.470 30.260 -0.254 32.730 hybrid contribution 0.439 -0.979 -0.881 1.388 sum -12.031 29.281 -1.135 31.677 Atomic orbital electron populations 1.20672 0.81526 1.05980 1.05363 1.23651 0.95848 0.83466 0.99446 1.21820 0.90812 1.01289 1.11324 1.21003 0.97754 0.92158 0.98284 1.20436 0.92934 0.98488 1.03165 1.21675 0.82243 0.94441 1.19060 1.16676 0.86056 0.81973 0.76525 1.90826 1.23309 1.76556 1.52605 1.45853 1.11534 1.04965 1.73819 1.21318 0.87555 0.88059 1.02751 1.21594 0.98381 0.91532 1.03973 1.21893 0.96664 0.86156 1.01830 1.60050 1.17565 1.02642 1.51444 1.21537 0.93484 0.88590 1.03194 1.20900 0.86555 0.87930 0.82242 1.90486 1.17577 1.86267 1.56738 1.41928 1.08908 1.05167 1.64969 1.19655 0.93915 0.82935 1.50188 0.90263 1.26055 0.95104 1.03896 0.96170 1.69669 1.01726 1.34514 1.50135 0.84972 0.77776 0.76527 0.78949 1.19646 1.19470 1.19749 1.83985 1.15550 1.35801 1.71558 0.88033 0.89517 0.86644 0.80099 0.90405 0.89248 0.91438 0.74956 0.91101 0.91100 0.90386 0.90523 0.93799 0.90065 0.83629 0.91453 0.87766 0.76945 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.41 71.24 0.74 0.41 16 2 C 0.03 0.37 7.31 24.97 0.18 0.55 16 3 C -0.23 -3.17 10.73 22.07 0.24 -2.93 16 4 C -0.09 -1.68 6.20 -19.74 -0.12 -1.81 16 5 C -0.09 -1.56 9.81 71.23 0.70 -0.86 16 6 C -0.12 -2.63 7.13 24.07 0.17 -2.46 16 7 C 0.60 14.15 7.79 86.44 0.67 14.83 16 8 O -0.55 -15.88 14.74 -4.32 -0.06 -15.95 16 9 N -0.71 -13.44 5.55 -467.12 -2.59 -16.03 16 10 C 0.13 2.30 5.67 86.38 0.49 2.79 16 11 C -0.12 -2.10 5.59 30.59 0.17 -1.92 16 12 C 0.06 1.38 5.68 86.30 0.49 1.87 16 13 N -0.68 -20.96 6.13 -517.95 -3.17 -24.14 16 14 C 0.06 2.19 6.17 85.56 0.53 2.72 16 15 C 0.44 20.85 7.82 87.66 0.69 21.54 16 16 O -0.62 -34.73 15.78 -3.09 -0.05 -34.78 16 17 N -0.57 -29.57 5.29 -306.98 -1.62 -31.19 16 18 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.77 13.05 21.66 0.28 -49.48 16 22 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 O -0.17 -3.15 10.40 -5.07 -0.05 -3.20 16 27 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 29 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.41 6.45 -2.39 -0.02 1.40 16 34 H 0.41 6.40 8.23 -92.71 -0.76 5.63 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.35 10.98 8.43 -89.69 -0.76 10.23 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 45 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -74.46 387.67 -0.23 -74.69 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -1.21 Total: 39.04 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.23 Total: 16.03 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -7.11 Total: -120.84 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.17 Total: -53.93 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -74.46 -0.23 -74.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156313713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.496 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds