Wall clock time and date at job start Tue Mar 31 2020 13:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47387 * 2 1 4 4 C 1.36936 * 119.99625 * 84.32349 * 3 2 1 5 5 H 1.07990 * 120.00224 * 32.48975 * 4 3 2 6 6 C 1.38817 * 119.99356 * 212.76160 * 4 3 2 7 7 N 1.31612 * 120.00555 * 10.70701 * 6 4 3 8 8 Si 1.86806 * 119.99619 * 190.70786 * 6 4 3 9 9 H 1.48502 * 109.46844 * 60.00123 * 8 6 4 10 10 H 1.48495 * 109.46903 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47111 * 300.00113 * 8 6 4 12 12 C 1.46503 * 119.99904 * 264.32781 * 3 2 1 13 13 H 1.08997 * 109.46764 * 183.65693 * 12 3 2 14 14 C 1.52996 * 109.47224 * 63.65636 * 12 3 2 15 15 C 1.52999 * 109.47145 * 303.65594 * 12 3 2 16 16 N 1.46510 * 109.47032 * 305.00275 * 15 12 3 17 17 C 1.34769 * 119.99824 * 179.97438 * 16 15 12 18 18 O 1.21687 * 120.00421 * 0.02562 * 17 16 15 19 19 C 1.46688 * 120.00105 * 179.97438 * 17 16 15 20 20 C 1.35657 * 126.12444 * 359.69960 * 19 17 16 21 21 N 1.30952 * 114.18787 * 179.78062 * 20 19 17 22 22 C 1.29429 * 117.36096 * 0.52753 * 21 20 19 23 23 C 1.50702 * 124.80251 * 179.72999 * 22 21 20 24 24 C 1.53000 * 117.50009 * 8.59243 * 23 22 21 25 25 C 1.52998 * 117.49691 * 299.97037 * 23 22 21 26 26 S 1.70958 * 110.39153 * 359.70313 * 22 21 20 27 27 H 1.09007 * 109.46758 * 299.99532 * 1 2 3 28 28 H 1.09002 * 109.47414 * 59.99836 * 1 2 3 29 29 H 1.09002 * 109.47455 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46916 * 240.00393 * 2 1 3 31 31 H 1.09002 * 109.47414 * 120.00164 * 2 1 3 32 32 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47296 * 299.99731 * 14 12 3 34 34 H 1.08996 * 109.47113 * 60.00263 * 14 12 3 35 35 H 1.09002 * 109.46766 * 179.97438 * 14 12 3 36 36 H 1.09003 * 109.47272 * 64.99704 * 15 12 3 37 37 H 1.08997 * 109.47169 * 185.00552 * 15 12 3 38 38 H 0.97000 * 119.99560 * 0.02562 * 16 15 12 39 39 H 1.08002 * 122.90876 * 359.95782 * 20 19 17 40 40 H 1.08999 * 115.54856 * 154.30130 * 23 22 21 41 41 H 1.09005 * 117.49960 * 0.02562 * 24 23 22 42 42 H 1.08995 * 117.49963 * 145.02074 * 24 23 22 43 43 H 1.08998 * 117.49751 * 214.98097 * 25 23 22 44 44 H 1.08994 * 117.50048 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1360 2.0658 1.1801 5 1 2.3891 1.5380 2.0876 6 6 1.9243 3.4374 1.2109 7 7 1.4087 4.0474 0.1648 8 14 2.3712 4.4174 2.7371 9 1 3.8235 4.2723 3.0108 10 1 2.0502 5.8504 2.5167 11 1 1.5956 3.9085 3.8968 12 6 2.3808 2.0300 -1.2626 13 1 2.7805 3.0234 -1.0589 14 6 1.1392 2.1515 -2.1483 15 6 3.4399 1.1917 -1.9811 16 7 4.5802 0.9749 -1.0873 17 6 5.6402 0.2574 -1.5092 18 8 5.6504 -0.2099 -2.6327 19 6 6.7823 0.0408 -0.6144 20 6 6.9048 0.5076 0.6534 21 7 8.0239 0.1700 1.2437 22 6 8.8643 -0.5412 0.5632 23 6 10.2003 -1.0163 1.0737 24 6 10.5054 -0.8044 2.5579 25 6 11.2120 0.0484 1.5023 26 16 8.2440 -0.8661 -0.9964 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2605 5.0057 0.1864 33 1 0.7396 1.1582 -2.3520 34 1 0.3848 2.7488 -1.6364 35 1 1.4089 2.6347 -3.0875 36 1 3.0117 0.2298 -2.2636 37 1 3.7741 1.7174 -2.8755 38 1 4.5719 1.3471 -0.1916 39 1 6.1439 1.1036 1.1353 40 1 10.5889 -1.9197 0.6036 41 1 9.7397 -0.3217 3.1653 42 1 11.0948 -1.5685 3.0646 43 1 12.2663 -0.1547 1.3145 44 1 10.9115 1.0924 1.4146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156510952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:31 Heat of formation + Delta-G solvation = 51.665254 kcal Electronic energy + Delta-G solvation = -25271.602659 eV Core-core repulsion = 21738.368310 eV Total energy + Delta-G solvation = -3533.234349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14892 -39.01166 -37.10469 -36.84144 -33.84423 -31.90566 -31.28515 -30.02479 -28.33634 -26.80497 -25.15053 -23.94737 -22.94281 -22.63173 -21.64629 -21.12589 -19.47965 -18.84380 -18.26929 -17.15134 -16.70276 -16.03892 -15.25781 -15.18277 -14.81590 -14.61306 -14.43739 -14.15892 -13.84307 -13.62272 -13.27143 -12.74632 -12.46057 -12.41038 -11.93353 -11.78461 -11.62228 -11.55047 -11.43526 -11.27012 -11.08852 -11.02432 -10.90252 -10.83866 -10.52023 -10.33185 -10.07073 -9.94498 -9.60284 -9.53917 -9.46710 -9.44271 -8.86996 -8.57489 -8.46122 -6.70933 -5.88979 -3.39704 0.25377 1.11507 1.66627 2.46323 3.31208 3.37732 3.39250 3.42373 3.58269 3.70637 3.91198 4.40081 4.50366 4.54483 4.69314 5.04107 5.13344 5.28470 5.32562 5.36404 5.38647 5.50832 5.73543 5.86561 5.92326 6.05412 6.09278 6.13277 6.30603 6.43153 6.48691 6.55424 6.69301 6.71194 6.78145 6.95157 6.99589 7.25971 7.52322 7.58993 7.61459 7.74629 7.98673 8.40699 8.55199 9.14855 9.74673 10.30605 11.17401 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.003751 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.392534 B = 7463.555368 C = 8741.558699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.177 3.823 13 H 0.107 0.893 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.687 5.687 17 C 0.584 3.416 18 O -0.555 6.555 19 C -0.285 4.285 20 C 0.095 3.905 21 N -0.476 5.476 22 C 0.064 3.936 23 C -0.100 4.100 24 C -0.148 4.148 25 C -0.155 4.155 26 S 0.219 5.781 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.255 0.745 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.411 0.589 39 H 0.186 0.814 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.759 -8.168 0.057 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.306 5.306 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.539 5.539 8 Si 0.729 3.271 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.070 3.930 13 H 0.124 0.876 14 C -0.201 4.201 15 C -0.024 4.024 16 N -0.337 5.337 17 C 0.368 3.632 18 O -0.435 6.435 19 C -0.410 4.410 20 C -0.063 4.063 21 N -0.191 5.191 22 C -0.210 4.210 23 C -0.121 4.121 24 C -0.187 4.187 25 C -0.194 4.194 26 S 0.478 5.522 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.249 0.751 39 H 0.203 0.797 40 H 0.146 0.854 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.203 -8.734 -1.137 17.570 hybrid contribution -0.838 1.317 1.635 2.261 sum 14.365 -7.417 0.498 16.175 Atomic orbital electron populations 1.22387 0.99763 0.98354 1.02087 1.20802 0.91955 0.87621 0.98052 1.43966 1.73903 1.09829 1.02899 1.19113 1.41942 0.90218 0.87829 0.91757 1.25173 0.98458 0.98142 0.97040 1.69913 1.45382 1.09334 1.29245 0.86434 0.78421 0.79186 0.83040 1.20911 1.21680 1.20940 1.20554 0.90847 0.96663 0.84934 0.87576 1.22115 1.00524 0.99477 0.97995 1.22242 0.86747 1.00773 0.92642 1.45742 1.16877 1.52004 1.19087 1.16743 0.81483 0.79340 0.85638 1.90794 1.81189 1.51608 1.19950 1.25901 1.02440 1.11799 1.00812 1.22287 0.94945 0.98691 0.90353 1.66025 1.02806 1.14020 1.36213 1.26464 0.99551 0.99754 0.95203 1.20525 0.90005 1.01474 1.00145 1.23023 1.03017 1.02595 0.90093 1.23055 0.96834 0.96809 1.02705 1.83877 1.08222 1.46966 1.13105 0.92913 0.93131 0.95376 0.94502 0.94618 0.93458 0.95257 0.90011 0.95192 0.92589 0.92424 0.75149 0.79676 0.85421 0.87186 0.88049 0.87826 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.02 37.15 0.37 -2.83 16 2 C 0.14 2.83 5.73 -4.04 -0.02 2.81 16 3 N -0.58 -12.83 1.83 -165.66 -0.30 -13.14 16 4 C -0.26 -6.34 9.51 -15.06 -0.14 -6.48 16 5 H 0.06 1.57 7.85 -52.49 -0.41 1.16 16 6 C 0.01 0.29 5.02 -17.43 -0.09 0.20 16 7 N -0.90 -23.19 9.91 55.49 0.55 -22.64 16 8 Si 0.90 20.18 29.57 -169.99 -5.03 15.15 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.18 3.73 1.92 -67.93 -0.13 3.60 16 13 H 0.11 2.54 5.96 -51.93 -0.31 2.23 16 14 C -0.14 -2.89 8.23 37.16 0.31 -2.58 16 15 C 0.10 1.93 4.85 -4.04 -0.02 1.91 16 16 N -0.69 -12.51 5.37 -61.61 -0.33 -12.84 16 17 C 0.58 10.65 7.79 -12.85 -0.10 10.55 16 18 O -0.55 -11.54 16.97 5.20 0.09 -11.45 16 19 C -0.29 -4.48 6.48 -37.09 -0.24 -4.72 16 20 C 0.09 1.41 10.93 -18.85 -0.21 1.21 16 21 N -0.48 -6.80 9.98 -11.50 -0.11 -6.91 16 22 C 0.06 0.79 6.96 -13.29 -0.09 0.70 16 23 C -0.10 -0.89 6.28 -91.77 -0.58 -1.47 16 24 C -0.15 -1.21 10.12 -26.73 -0.27 -1.48 16 25 C -0.15 -1.20 10.23 -26.73 -0.27 -1.47 16 26 S 0.22 2.83 23.01 -107.50 -2.47 0.35 16 27 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 31 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.03 0.56 6.49 -51.93 -0.34 0.22 16 34 H 0.08 1.90 7.12 -51.93 -0.37 1.53 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 1.09 6.75 -51.93 -0.35 0.74 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.41 7.47 6.80 -40.82 -0.28 7.20 16 39 H 0.19 2.63 7.15 -52.49 -0.38 2.25 16 40 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.11 1.09 7.84 -51.93 -0.41 0.68 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -27.88 371.90 -9.91 -37.79 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.42 Total: 8.14 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.49 Total: -0.06 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.20 Total: -55.53 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.47 Total: 0.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.88 -9.91 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156510952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.457 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds