Wall clock time and date at job start Tue Mar 31 2020 14:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44070 * 2 1 4 4 C 1.36545 * 106.70917 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98783 * 180.02562 * 4 3 2 6 6 O 1.21694 * 120.00205 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00176 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99852 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46747 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47202 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.47129 * 180.02562 * 10 9 8 12 12 C 1.46903 * 111.00011 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47079 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00337 * 359.97438 * 13 12 11 15 15 N 1.34785 * 119.99776 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99888 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99947 * 359.97438 * 16 15 13 18 18 C 1.38945 * 119.99826 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00468 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99752 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47031 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47043 * 119.99807 * 20 18 16 23 23 H 1.48497 * 109.47099 * 239.99471 * 20 18 16 24 24 O 1.34911 * 108.02206 * 0.02562 * 4 3 2 25 25 C 1.33931 * 109.38652 * 359.97438 * 24 4 3 26 26 C 1.50700 * 125.61431 * 179.97438 * 25 24 4 27 27 H 1.08997 * 109.46979 * 90.02911 * 1 2 3 28 28 H 1.09004 * 109.46936 * 210.02679 * 1 2 3 29 29 H 1.08994 * 109.47307 * 330.02305 * 1 2 3 30 30 H 1.08003 * 126.64463 * 0.26137 * 3 2 1 31 31 H 0.97000 * 119.99616 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.47523 * 299.99926 * 8 7 5 33 33 H 1.08997 * 109.47037 * 60.00707 * 8 7 5 34 34 H 1.09003 * 109.47236 * 299.99883 * 9 8 7 35 35 H 1.09005 * 109.47647 * 60.00042 * 9 8 7 36 36 H 1.09001 * 109.47070 * 299.99545 * 10 9 8 37 37 H 1.09003 * 109.47378 * 59.99761 * 10 9 8 38 38 H 1.00895 * 111.00082 * 56.04725 * 11 10 9 39 39 H 1.09008 * 109.46389 * 299.99834 * 12 11 10 40 40 H 1.09002 * 109.47609 * 59.99158 * 12 11 10 41 41 H 0.96994 * 119.99961 * 359.97438 * 15 13 12 42 42 H 0.96998 * 120.00267 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.47131 * 0.03035 * 26 25 24 44 44 H 1.09005 * 109.46477 * 120.02904 * 26 25 24 45 45 H 1.09000 * 109.47245 * 240.02580 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4942 -0.0003 6 8 4.7470 2.7077 0.0011 7 7 6.0521 0.9093 -0.0004 8 6 7.2625 1.7346 -0.0007 9 6 8.4964 0.8299 -0.0014 10 6 9.7607 1.6916 -0.0010 11 7 10.9454 0.8229 -0.0024 12 6 12.1809 1.6177 -0.0014 13 6 13.3719 0.6945 -0.0022 14 8 13.2079 -0.5072 -0.0030 15 7 14.6197 1.2043 -0.0021 16 6 15.7033 0.3644 -0.0033 17 1 15.5571 -0.7057 -0.0040 18 6 16.9895 0.8900 -0.0027 19 7 17.1674 2.1919 -0.0013 20 14 18.4660 -0.2544 -0.0036 21 1 17.9995 -1.6642 -0.0045 22 1 19.2862 -0.0032 -1.2158 23 1 19.2860 -0.0055 1.2091 24 8 3.5858 -0.6803 -0.0015 25 6 2.3097 -1.0870 -0.0010 26 6 1.8456 -2.5208 -0.0022 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5134 30 1 2.0265 2.1625 0.0040 31 1 6.1245 -0.0580 -0.0011 32 1 7.2733 2.3637 -0.8907 33 1 7.2735 2.3637 0.8893 34 1 8.4860 0.2004 0.8884 35 1 8.4854 0.2008 -0.8916 36 1 9.7714 2.3213 -0.8907 37 1 9.7716 2.3203 0.8893 38 1 10.9256 0.1857 -0.7843 39 1 12.2083 2.2476 -0.8907 40 1 12.2086 2.2453 0.8893 41 1 14.7509 2.1653 -0.0019 42 1 18.0653 2.5588 -0.0012 43 1 2.7114 -3.1829 -0.0031 44 1 1.2451 -2.7089 0.8879 45 1 1.2445 -2.7073 -0.8921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156585977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:57 Heat of formation + Delta-G solvation = -73.202019 kcal Electronic energy + Delta-G solvation = -25152.249361 eV Core-core repulsion = 21170.847490 eV Total energy + Delta-G solvation = -3981.401871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.15163 -39.78381 -38.32008 -36.61512 -35.14812 -34.70704 -33.84469 -32.52813 -31.51453 -31.11815 -29.20907 -27.67690 -26.46420 -24.79160 -23.42275 -22.30543 -21.77981 -21.49886 -19.94420 -19.21981 -18.22066 -17.86091 -16.99070 -16.55505 -16.17656 -15.97101 -15.83270 -15.32263 -14.64596 -14.61602 -14.32081 -14.19940 -14.10454 -13.70385 -13.53916 -13.50270 -13.38378 -13.36448 -13.16564 -12.89513 -12.76982 -12.09228 -12.02906 -11.87191 -11.81997 -11.48285 -11.43926 -11.10594 -10.96214 -10.61577 -10.34252 -10.22402 -10.12812 -9.52092 -9.49751 -8.79293 -8.47470 -8.07752 -7.95984 -6.41680 -3.82554 0.65452 1.84538 2.19316 2.81735 2.83892 3.16491 3.27065 3.34364 3.90796 4.07100 4.13354 4.29303 4.32952 4.38773 4.72107 4.79159 4.85372 4.89023 4.96833 5.02814 5.10899 5.16389 5.17801 5.25493 5.27169 5.39379 5.40381 5.46485 5.50124 5.57697 5.61240 5.78613 5.90906 5.97792 5.99918 6.02025 6.07708 6.26857 6.45780 7.09939 7.18661 7.55476 7.63885 7.72314 8.06592 8.61324 9.17994 9.54435 10.05755 10.76135 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036043 B = 0.001443 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.661963 B =19394.250901 C =20127.217318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.195 4.195 3 C -0.113 4.113 4 C -0.080 4.080 5 C 0.603 3.397 6 O -0.521 6.521 7 N -0.718 5.718 8 C 0.120 3.880 9 C -0.130 4.130 10 C 0.063 3.937 11 N -0.670 5.670 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 O -0.161 6.161 25 C 0.018 3.982 26 C -0.078 4.078 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.160 0.840 31 H 0.407 0.593 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.412 -3.047 -0.892 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.196 4.196 3 C -0.133 4.133 4 C -0.132 4.132 5 C 0.389 3.611 6 O -0.399 6.399 7 N -0.368 5.368 8 C -0.004 4.004 9 C -0.168 4.168 10 C -0.067 4.067 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.468 6.468 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 O -0.057 6.057 25 C -0.034 4.034 26 C -0.134 4.134 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.242 0.758 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -32.090 -3.141 -0.208 32.244 hybrid contribution 0.917 0.196 -0.896 1.297 sum -31.172 -2.944 -1.105 31.331 Atomic orbital electron populations 1.20184 0.88512 1.02862 1.02308 1.20221 0.97596 0.91739 1.10024 1.21834 0.90521 1.00528 1.00449 1.21953 0.96165 0.80303 1.14778 1.16522 0.81251 0.86338 0.76977 1.90895 1.86012 1.12241 1.50750 1.45913 1.05428 1.11089 1.74410 1.21427 0.82362 0.93613 1.02982 1.21753 0.92589 0.98624 1.03852 1.21823 0.89343 0.94677 1.00896 1.60039 0.99923 1.18967 1.51294 1.21673 0.89861 0.95359 1.01312 1.19813 0.84000 0.89125 0.84469 1.90518 1.85494 1.15363 1.55433 1.41872 1.04250 1.09579 1.64342 1.19761 0.83626 0.92026 1.47499 0.87857 1.25262 0.99033 0.96321 0.97318 1.69617 1.23341 1.10672 1.50661 0.85799 0.80633 0.80203 0.77698 1.19212 1.20775 1.20739 1.84006 1.28927 1.21761 1.71032 1.22626 0.80537 0.97266 1.02960 1.20417 1.02117 0.86956 1.03952 0.91248 0.91441 0.91246 0.82256 0.75812 0.90979 0.90731 0.89987 0.91126 0.95170 0.90688 0.83168 0.93791 0.89521 0.77440 0.91917 0.90069 0.89175 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.17 36.01 0.37 -0.01 16 2 C -0.19 -1.48 6.14 -104.93 -0.64 -2.13 16 3 C -0.11 -1.06 10.57 -39.39 -0.42 -1.48 16 4 C -0.08 -0.84 7.13 -36.80 -0.26 -1.10 16 5 C 0.60 6.98 7.79 -12.86 -0.10 6.88 16 6 O -0.52 -7.57 16.86 5.19 0.09 -7.48 16 7 N -0.72 -6.79 5.55 -61.63 -0.34 -7.13 16 8 C 0.12 1.13 5.67 -4.04 -0.02 1.10 16 9 C -0.13 -1.24 5.59 -26.73 -0.15 -1.39 16 10 C 0.06 0.73 5.69 -3.82 -0.02 0.71 16 11 N -0.67 -10.62 6.12 -115.05 -0.70 -11.32 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 C 0.44 10.46 7.82 -10.98 -0.09 10.37 16 14 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 15 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 16 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 17 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 20 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 O -0.16 -1.49 10.40 5.00 0.05 -1.44 16 25 C 0.02 0.14 7.31 -35.42 -0.26 -0.12 16 26 C -0.08 -0.28 9.92 36.01 0.36 0.08 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.21 7.88 -51.93 -0.41 -0.20 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 31 H 0.41 3.14 8.23 -40.82 -0.34 2.81 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 39 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -34.33 390.89 -7.62 -41.96 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.83 Total: 11.90 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -1.51 Total: 5.73 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.38 Total: -56.77 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.23 Total: -24.77 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.33 -7.62 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156585977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.246 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds