Wall clock time and date at job start Tue Mar 31 2020 14:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44070 * 2 1 4 4 C 1.36545 * 106.70917 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98783 * 180.02562 * 4 3 2 6 6 O 1.21694 * 120.00205 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00176 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99852 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46747 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47202 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.47129 * 180.02562 * 10 9 8 12 12 C 1.46903 * 111.00011 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47079 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00337 * 359.97438 * 13 12 11 15 15 N 1.34785 * 119.99776 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99888 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99947 * 359.97438 * 16 15 13 18 18 C 1.38945 * 119.99826 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00468 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99752 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47031 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47043 * 119.99807 * 20 18 16 23 23 H 1.48497 * 109.47099 * 239.99471 * 20 18 16 24 24 O 1.34911 * 108.02206 * 0.02562 * 4 3 2 25 25 C 1.33931 * 109.38652 * 359.97438 * 24 4 3 26 26 C 1.50700 * 125.61431 * 179.97438 * 25 24 4 27 27 H 1.08997 * 109.46979 * 90.02911 * 1 2 3 28 28 H 1.09004 * 109.46936 * 210.02679 * 1 2 3 29 29 H 1.08994 * 109.47307 * 330.02305 * 1 2 3 30 30 H 1.08003 * 126.64463 * 0.26137 * 3 2 1 31 31 H 0.97000 * 119.99616 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.47523 * 299.99926 * 8 7 5 33 33 H 1.08997 * 109.47037 * 60.00707 * 8 7 5 34 34 H 1.09003 * 109.47236 * 299.99883 * 9 8 7 35 35 H 1.09005 * 109.47647 * 60.00042 * 9 8 7 36 36 H 1.09001 * 109.47070 * 299.99545 * 10 9 8 37 37 H 1.09003 * 109.47378 * 59.99761 * 10 9 8 38 38 H 1.00895 * 111.00082 * 56.04725 * 11 10 9 39 39 H 1.09008 * 109.46389 * 299.99834 * 12 11 10 40 40 H 1.09002 * 109.47609 * 59.99158 * 12 11 10 41 41 H 0.96994 * 119.99961 * 359.97438 * 15 13 12 42 42 H 0.96998 * 120.00267 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.47131 * 0.03035 * 26 25 24 44 44 H 1.09005 * 109.46477 * 120.02904 * 26 25 24 45 45 H 1.09000 * 109.47245 * 240.02580 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4942 -0.0003 6 8 4.7470 2.7077 0.0011 7 7 6.0521 0.9093 -0.0004 8 6 7.2625 1.7346 -0.0007 9 6 8.4964 0.8299 -0.0014 10 6 9.7607 1.6916 -0.0010 11 7 10.9454 0.8229 -0.0024 12 6 12.1809 1.6177 -0.0014 13 6 13.3719 0.6945 -0.0022 14 8 13.2079 -0.5072 -0.0030 15 7 14.6197 1.2043 -0.0021 16 6 15.7033 0.3644 -0.0033 17 1 15.5571 -0.7057 -0.0040 18 6 16.9895 0.8900 -0.0027 19 7 17.1674 2.1919 -0.0013 20 14 18.4660 -0.2544 -0.0036 21 1 17.9995 -1.6642 -0.0045 22 1 19.2862 -0.0032 -1.2158 23 1 19.2860 -0.0055 1.2091 24 8 3.5858 -0.6803 -0.0015 25 6 2.3097 -1.0870 -0.0010 26 6 1.8456 -2.5208 -0.0022 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5134 30 1 2.0265 2.1625 0.0040 31 1 6.1245 -0.0580 -0.0011 32 1 7.2733 2.3637 -0.8907 33 1 7.2735 2.3637 0.8893 34 1 8.4860 0.2004 0.8884 35 1 8.4854 0.2008 -0.8916 36 1 9.7714 2.3213 -0.8907 37 1 9.7716 2.3203 0.8893 38 1 10.9256 0.1857 -0.7843 39 1 12.2083 2.2476 -0.8907 40 1 12.2086 2.2453 0.8893 41 1 14.7509 2.1653 -0.0019 42 1 18.0653 2.5588 -0.0012 43 1 2.7114 -3.1829 -0.0031 44 1 1.2451 -2.7089 0.8879 45 1 1.2445 -2.7073 -0.8921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156585977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:56 Heat of formation + Delta-G solvation = -99.380284 kcal Electronic energy + Delta-G solvation = -25153.384536 eV Core-core repulsion = 21170.847490 eV Total energy + Delta-G solvation = -3982.537046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.79181 -40.66358 -40.15530 -37.70305 -36.22338 -35.76980 -35.34478 -33.31731 -33.12826 -32.34046 -29.66989 -28.81399 -27.47423 -26.25780 -24.61805 -23.08745 -22.64636 -22.21188 -21.09991 -20.60887 -19.90572 -18.92587 -17.88844 -17.67220 -17.25791 -17.10511 -16.62001 -16.56960 -16.32778 -15.95540 -15.48153 -15.39526 -15.08307 -14.72251 -14.54866 -14.33330 -14.14508 -14.04720 -13.66028 -13.62605 -13.56859 -13.38921 -13.20415 -13.07939 -12.87568 -12.75890 -12.47383 -12.43942 -12.40297 -12.11072 -11.89098 -11.53805 -11.51658 -10.78397 -10.36074 -10.32364 -10.01984 -9.39082 -9.33802 -8.47093 -5.96032 -0.06763 1.24025 1.36771 1.42166 1.52392 1.56493 2.01376 2.04524 2.07405 2.29575 2.93327 3.20298 3.51134 3.54159 3.76933 3.84744 3.97251 4.09802 4.14738 4.29756 4.33353 4.43706 4.48046 4.54397 4.58090 4.65998 4.69403 4.69859 4.72816 4.78156 4.87689 5.03811 5.04162 5.08476 5.13187 5.15192 5.27308 5.40911 5.54530 5.81627 5.87962 6.09363 6.33024 6.40887 6.59618 6.90194 7.12199 7.55717 8.10811 8.70523 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036043 B = 0.001443 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.661963 B =19394.250901 C =20127.217318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.205 4.205 3 C -0.119 4.119 4 C -0.108 4.108 5 C 0.601 3.399 6 O -0.560 6.560 7 N -0.708 5.708 8 C 0.125 3.875 9 C -0.116 4.116 10 C 0.064 3.936 11 N -0.684 5.684 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.624 6.624 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.271 1.271 24 O -0.169 6.169 25 C 0.020 3.980 26 C -0.079 4.079 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.416 0.584 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.345 0.655 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.545 -3.708 -0.985 33.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.140 4.140 4 C -0.159 4.159 5 C 0.389 3.611 6 O -0.441 6.441 7 N -0.359 5.359 8 C 0.002 3.998 9 C -0.155 4.155 10 C -0.066 4.066 11 N -0.317 5.317 12 C -0.068 4.068 13 C 0.224 3.776 14 O -0.510 6.510 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.097 0.903 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.196 1.196 24 O -0.065 6.065 25 C -0.032 4.032 26 C -0.134 4.134 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.177 0.823 31 H 0.252 0.748 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.164 0.836 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -33.228 -3.794 -0.300 33.446 hybrid contribution 1.164 0.355 -0.865 1.493 sum -32.064 -3.439 -1.165 32.269 Atomic orbital electron populations 1.20272 0.86352 1.03914 1.03176 1.20590 0.99102 0.90989 1.09979 1.22087 0.90838 1.01294 0.99801 1.21757 0.95968 0.80942 1.17267 1.16688 0.81988 0.86040 0.76407 1.90859 1.86647 1.13755 1.52853 1.45847 1.04967 1.11583 1.73460 1.21347 0.82185 0.93478 1.02823 1.21596 0.91599 0.98217 1.04051 1.21896 0.88254 0.94579 1.01835 1.60037 1.00449 1.19769 1.51439 1.21537 0.87873 0.94186 1.03201 1.20902 0.84972 0.89514 0.82197 1.90484 1.86257 1.17588 1.56689 1.41943 1.04585 1.09503 1.65007 1.19722 0.85317 0.91487 1.49940 0.90290 1.26041 1.01059 0.97895 0.96211 1.69675 1.24367 1.11752 1.50338 0.84863 0.77218 0.77880 0.78321 1.19753 1.19561 1.19639 1.83993 1.30154 1.21088 1.71296 1.23469 0.79758 0.99019 1.00942 1.20657 1.02732 0.84335 1.05712 0.90393 0.89515 0.91115 0.82304 0.74772 0.91049 0.91051 0.90310 0.90439 0.93797 0.90070 0.83605 0.91442 0.87777 0.76951 0.91288 0.89645 0.87257 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.17 71.24 0.72 0.14 16 2 C -0.21 -2.90 6.14 -20.06 -0.12 -3.02 16 3 C -0.12 -2.28 10.57 22.39 0.24 -2.04 16 4 C -0.11 -2.28 7.13 24.07 0.17 -2.11 16 5 C 0.60 14.25 7.79 86.44 0.67 14.93 16 6 O -0.56 -16.83 16.86 -4.33 -0.07 -16.91 16 7 N -0.71 -13.24 5.55 -467.11 -2.59 -15.83 16 8 C 0.13 2.26 5.67 86.38 0.49 2.75 16 9 C -0.12 -2.07 5.59 30.59 0.17 -1.90 16 10 C 0.06 1.36 5.69 86.30 0.49 1.85 16 11 N -0.68 -20.85 6.12 -517.91 -3.17 -24.03 16 12 C 0.06 2.18 6.17 85.55 0.53 2.71 16 13 C 0.44 20.84 7.82 87.65 0.69 21.52 16 14 O -0.62 -34.67 15.78 -3.05 -0.05 -34.71 16 15 N -0.57 -29.56 5.29 -306.99 -1.62 -31.18 16 16 C -0.34 -19.15 9.68 84.04 0.81 -18.33 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 19 N -0.92 -49.80 13.05 21.66 0.28 -49.51 16 20 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 O -0.17 -3.05 10.40 -5.02 -0.05 -3.10 16 25 C 0.02 0.27 7.31 24.97 0.18 0.46 16 26 C -0.08 -0.35 9.92 71.24 0.71 0.35 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 0.30 7.88 -2.38 -0.02 0.28 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.42 6.22 8.23 -92.71 -0.76 5.45 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.35 10.92 8.43 -89.70 -0.76 10.17 16 39 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.40 19.39 7.90 -92.71 -0.73 18.65 16 42 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 45 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -75.18 390.89 -0.25 -75.43 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -1.22 Total: 37.71 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.22 Total: 17.11 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -7.11 Total: -120.55 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.17 Total: -54.72 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.18 -0.25 -75.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156585977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.950 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds