Wall clock time and date at job start Tue Mar 31 2020 14:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00339 * 2 1 4 4 C 1.50698 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.38146 * 120.34949 * 0.02562 * 4 3 2 6 6 C 1.39660 * 118.49961 * 179.97438 * 5 4 3 7 7 N 1.38530 * 120.48063 * 180.02562 * 6 5 4 8 8 C 1.46492 * 120.00214 * 0.02562 * 7 6 5 9 9 H 1.09000 * 109.41753 * 35.14066 * 8 7 6 10 10 C 1.52965 * 109.41387 * 155.00132 * 8 7 6 11 11 C 1.53234 * 109.40434 * 183.70248 * 10 8 7 12 12 C 1.51270 * 108.53658 * 305.37168 * 11 10 8 13 13 C 1.37875 * 120.84631 * 231.32500 * 12 11 10 14 14 N 1.31509 * 120.00571 * 0.02562 * 13 12 11 15 15 Si 1.86797 * 119.99688 * 179.97438 * 13 12 11 16 16 H 1.48506 * 109.47201 * 90.00323 * 15 13 12 17 17 H 1.48501 * 109.47455 * 210.00155 * 15 13 12 18 18 H 1.48502 * 109.47529 * 330.00488 * 15 13 12 19 19 C 1.51265 * 118.29920 * 51.34632 * 12 11 10 20 20 C 1.52960 * 109.41402 * 275.34939 * 8 7 6 21 21 N 1.32914 * 119.03270 * 359.73331 * 6 5 4 22 22 C 1.32507 * 120.60669 * 0.53813 * 21 6 5 23 23 S 1.76199 * 119.18211 * 179.72187 * 22 21 6 24 24 C 1.81002 * 100.00182 * 179.73410 * 23 22 21 25 25 N 1.32470 * 120.35001 * 179.97438 * 4 3 2 26 26 H 1.08992 * 109.46995 * 300.00278 * 1 2 3 27 27 H 1.08998 * 109.46741 * 60.00235 * 1 2 3 28 28 H 1.08998 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47190 * 59.99327 * 3 2 1 30 30 H 1.09010 * 109.46865 * 300.00068 * 3 2 1 31 31 H 1.08000 * 120.75244 * 0.02562 * 5 4 3 32 32 H 0.97001 * 119.99547 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.48168 * 303.67534 * 10 8 7 34 34 H 1.08993 * 109.48495 * 63.72141 * 10 8 7 35 35 H 1.09001 * 109.62324 * 65.08449 * 11 10 8 36 36 H 1.08993 * 109.62679 * 185.46313 * 11 10 8 37 37 H 0.96993 * 120.00816 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.62910 * 68.36708 * 19 12 11 39 39 H 1.09002 * 109.62540 * 188.74395 * 19 12 11 40 40 H 1.09001 * 109.48203 * 296.27861 * 20 8 7 41 41 H 1.09004 * 109.48097 * 56.31693 * 20 8 7 42 42 H 1.09005 * 109.46889 * 299.99975 * 24 23 22 43 43 H 1.09000 * 109.47231 * 59.99947 * 24 23 22 44 44 H 1.08992 * 109.47075 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1142 -0.0571 0.0006 6 6 5.5093 -0.1224 0.0006 7 7 6.1554 -1.3478 0.0000 8 6 5.3749 -2.5875 -0.0012 9 1 4.4707 -2.4458 -0.5932 10 6 6.2107 -3.7140 -0.6113 11 6 5.3630 -4.9875 -0.6975 12 6 4.8138 -5.2938 0.6783 13 6 4.9635 -6.5454 1.2367 14 7 5.5908 -7.4913 0.5723 15 14 4.2766 -6.8974 2.9378 16 1 2.8814 -7.3914 2.8158 17 1 5.1105 -7.9294 3.6047 18 1 4.2916 -5.6512 3.7453 19 6 4.0959 -4.1918 1.4255 20 6 4.9895 -2.9471 1.4347 21 7 6.2080 1.0083 -0.0047 22 6 5.5925 2.1817 0.0008 23 16 6.5557 3.6571 0.0009 24 6 5.2349 4.8948 0.0010 25 7 4.2701 2.2731 0.0002 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 3.5193 -0.9585 -0.0003 32 1 7.1247 -1.3850 -0.0003 33 1 6.5355 -3.4252 -1.6110 34 1 7.0831 -3.8997 0.0151 35 1 4.5393 -4.8325 -1.3944 36 1 5.9817 -5.8166 -1.0408 37 1 5.6964 -8.3717 0.9653 38 1 3.1548 -3.9631 0.9252 39 1 3.8982 -4.5117 2.4486 40 1 5.8908 -3.1509 2.0128 41 1 4.4489 -2.1147 1.8853 42 1 4.6185 4.7683 -0.8891 43 1 4.6184 4.7682 0.8909 44 1 5.6725 5.8930 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:14 Heat of formation + Delta-G solvation = -24.947355 kcal Electronic energy + Delta-G solvation = -25311.539909 eV Core-core repulsion = 21774.983387 eV Total energy + Delta-G solvation = -3536.556521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.96445 -39.42512 -38.81961 -36.48252 -34.67351 -33.63691 -32.09816 -31.41798 -29.69079 -29.08041 -28.71437 -26.87453 -25.37763 -24.07304 -23.26280 -22.83135 -21.27943 -19.41259 -18.84376 -18.10344 -17.38077 -17.06175 -16.81442 -16.44446 -16.40529 -16.16312 -16.05794 -15.62892 -15.28806 -15.08377 -14.64764 -14.37311 -14.22366 -14.04080 -13.74911 -13.57024 -13.46178 -13.36835 -12.93794 -12.82217 -12.57396 -12.36701 -12.20561 -12.06521 -11.91822 -11.73955 -11.41801 -11.37342 -11.25415 -10.88881 -10.62614 -10.58502 -10.52541 -10.36889 -9.26817 -8.71236 -8.16971 -6.11369 -0.11286 0.22598 0.25175 1.25712 1.39170 1.42562 1.49745 2.00322 2.40975 2.47848 2.67712 3.11309 3.40011 3.74204 3.86485 3.96953 4.12829 4.24576 4.34091 4.36005 4.40612 4.41534 4.45805 4.55256 4.62310 4.62402 4.68020 4.82453 4.91783 4.93147 4.94892 5.02598 5.03827 5.17431 5.24038 5.27027 5.56213 5.60944 5.70846 5.74786 5.81012 6.11707 6.23816 6.33408 6.52741 6.94775 7.01934 7.46937 8.93689 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.003444 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.451332 B = 8128.380858 C = 9317.134085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.121 3.879 4 C 0.200 3.800 5 C -0.285 4.285 6 C 0.443 3.557 7 N -0.695 5.695 8 C 0.175 3.825 9 H 0.075 0.925 10 C -0.102 4.102 11 C 0.012 3.988 12 C -0.497 4.497 13 C 0.024 3.976 14 N -0.930 5.930 15 Si 0.937 3.063 16 H -0.273 1.273 17 H -0.294 1.294 18 H -0.251 1.251 19 C -0.018 4.018 20 C -0.109 4.109 21 N -0.589 5.589 22 C 0.324 3.676 23 S -0.013 6.013 24 C -0.130 4.130 25 N -0.566 5.566 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.407 0.593 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.005 0.995 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.026 0.974 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 23.142 -0.755 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.044 3.956 4 C 0.056 3.944 5 C -0.315 4.315 6 C 0.196 3.804 7 N -0.324 5.324 8 C 0.071 3.929 9 H 0.093 0.907 10 C -0.141 4.141 11 C -0.026 4.026 12 C -0.517 4.517 13 C -0.174 4.174 14 N -0.570 5.570 15 Si 0.764 3.236 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.176 1.176 19 C -0.056 4.056 20 C -0.148 4.148 21 N -0.318 5.318 22 C -0.053 4.053 23 S 0.219 5.781 24 C -0.299 4.299 25 N -0.292 5.292 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.166 0.834 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.023 0.977 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.064 23.630 -0.762 24.179 hybrid contribution -1.561 -1.892 0.727 2.558 sum -6.625 21.738 -0.035 22.726 Atomic orbital electron populations 1.22964 0.78289 1.04012 1.01506 1.87875 1.22231 1.27073 1.95774 1.20992 0.85433 0.85566 1.03620 1.21307 0.96778 0.87844 0.88435 1.21972 0.93632 1.01354 1.14560 1.18732 0.89243 0.86237 0.86198 1.44922 1.09557 1.01464 1.76437 1.20875 0.94106 0.81052 0.96860 0.90702 1.21712 0.98415 0.95193 0.98744 1.19277 0.94802 0.93258 0.95304 1.20611 1.34162 0.95111 1.01789 1.25574 0.95334 0.95842 1.00691 1.69955 1.43606 1.03818 1.39651 0.85862 0.78457 0.77881 0.81427 1.19895 1.22117 1.17560 1.19776 0.95437 0.93331 0.97028 1.21865 0.99682 0.97636 0.95605 1.67975 1.40490 0.97204 1.26155 1.24952 0.90528 0.96639 0.93192 1.85735 1.10434 0.91379 1.90568 1.23609 0.99928 0.99228 1.07159 1.68356 1.04511 1.32146 1.24185 0.92381 0.92262 0.88966 0.88837 0.88718 0.83372 0.75642 0.92634 0.93121 0.97672 0.95034 0.92815 0.95538 0.94582 0.93479 0.93358 0.89133 0.89183 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.64 9.25 -148.98 -1.38 -11.02 16 3 C 0.12 2.49 6.50 71.24 0.46 2.95 16 4 C 0.20 5.62 6.81 42.44 0.29 5.91 16 5 C -0.28 -9.18 8.19 22.59 0.18 -8.99 16 6 C 0.44 15.09 7.68 133.20 1.02 16.11 16 7 N -0.69 -23.14 5.22 -324.24 -1.69 -24.83 16 8 C 0.18 6.38 2.05 44.97 0.09 6.47 16 9 H 0.07 2.79 6.51 -2.39 -0.02 2.77 16 10 C -0.10 -4.07 5.40 30.66 0.17 -3.90 16 11 C 0.01 0.56 5.96 30.11 0.18 0.74 16 12 C -0.50 -25.33 5.51 -16.17 -0.09 -25.42 16 13 C 0.02 1.29 5.46 84.65 0.46 1.75 16 14 N -0.93 -53.76 12.73 21.45 0.27 -53.48 16 15 Si 0.94 42.44 27.53 68.60 1.89 44.33 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 18 H -0.25 -10.72 6.11 99.48 0.61 -10.12 16 19 C -0.02 -0.78 5.59 30.10 0.17 -0.61 16 20 C -0.11 -4.24 5.45 30.66 0.17 -4.07 16 21 N -0.59 -20.01 10.43 -194.02 -2.02 -22.03 16 22 C 0.32 9.75 7.85 180.44 1.42 11.16 16 23 S -0.01 -0.30 22.89 -56.49 -1.29 -1.60 16 24 C -0.13 -1.82 9.62 113.37 1.09 -0.73 16 25 N -0.57 -15.76 9.07 -184.77 -1.68 -17.43 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.15 4.99 5.36 -2.91 -0.02 4.97 16 32 H 0.41 12.82 8.72 -92.71 -0.81 12.01 16 33 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.03 1.70 7.08 -2.39 -0.02 1.68 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 39 H 0.04 1.58 4.59 -2.39 -0.01 1.57 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.77 7.76 -2.38 -0.02 1.75 16 42 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 43 H 0.09 1.30 8.11 -2.40 -0.02 1.28 16 44 H 0.13 1.05 8.14 -2.40 -0.02 1.03 16 Total: -1.00 -63.16 364.66 1.07 -62.09 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.11 Total: 20.91 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 6.86 Total: 3.06 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -5.12 Total: -117.78 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.38 Total: -11.02 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.89 Total: 44.33 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -1.29 Total: -1.60 kcal Total: -63.16 1.07 -62.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.141 kcal (2) G-P(sol) polarization free energy of solvation -63.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds