Wall clock time and date at job start Tue Mar 31 2020 13:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47419 * 2 1 4 4 C 1.36941 * 119.99909 * 274.04294 * 3 2 1 5 5 H 1.07999 * 120.00027 * 174.70890 * 4 3 2 6 6 C 1.38817 * 119.99752 * 354.70173 * 4 3 2 7 7 N 1.31614 * 120.00086 * 31.38848 * 6 4 3 8 8 Si 1.86793 * 119.99719 * 211.38687 * 6 4 3 9 9 H 1.48500 * 109.47286 * 85.00303 * 8 6 4 10 10 H 1.48507 * 109.47004 * 204.99639 * 8 6 4 11 11 H 1.48501 * 109.47656 * 324.99784 * 8 6 4 12 12 C 1.46497 * 119.99888 * 94.03498 * 3 2 1 13 13 H 1.09005 * 109.46947 * 180.02562 * 12 3 2 14 14 C 1.53006 * 109.46754 * 60.00568 * 12 3 2 15 15 C 1.52998 * 109.47461 * 300.00470 * 12 3 2 16 16 N 1.46498 * 109.47032 * 304.99713 * 15 12 3 17 17 C 1.34770 * 120.00121 * 179.97438 * 16 15 12 18 18 O 1.21634 * 120.00378 * 0.02562 * 17 16 15 19 19 C 1.47269 * 120.00091 * 180.02562 * 17 16 15 20 20 C 1.35215 * 123.14089 * 180.02562 * 19 17 16 21 21 S 1.70943 * 108.82683 * 179.97438 * 20 19 17 22 22 C 1.70774 * 91.12785 * 0.02562 * 21 20 19 23 23 C 1.50700 * 124.71793 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49989 * 8.59994 * 23 22 21 25 25 C 1.52993 * 117.49933 * 299.97484 * 23 22 21 26 26 N 1.28644 * 110.56158 * 359.76379 * 22 21 20 27 27 H 1.08993 * 109.47003 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47197 * 300.00588 * 1 2 3 29 29 H 1.09004 * 109.47248 * 59.99680 * 1 2 3 30 30 H 1.09004 * 109.47057 * 240.00174 * 2 1 3 31 31 H 1.08998 * 109.46876 * 119.99721 * 2 1 3 32 32 H 0.97001 * 120.00109 * 179.97438 * 7 6 4 33 33 H 1.08992 * 109.47205 * 299.99297 * 14 12 3 34 34 H 1.09001 * 109.47113 * 60.00122 * 14 12 3 35 35 H 1.08998 * 109.46526 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.46727 * 185.00089 * 15 12 3 37 37 H 1.08996 * 109.47158 * 64.99966 * 15 12 3 38 38 H 0.97001 * 120.00012 * 0.02562 * 16 15 12 39 39 H 1.08000 * 125.58706 * 359.96226 * 20 19 17 40 40 H 1.09004 * 115.54805 * 154.29997 * 23 22 21 41 41 H 1.08997 * 117.49466 * 359.97438 * 24 23 22 42 42 H 1.08994 * 117.50214 * 145.02229 * 24 23 22 43 43 H 1.09005 * 117.49972 * 214.98151 * 25 23 22 44 44 H 1.09004 * 117.50142 * 359.97331 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4455 3.0983 -1.1789 6 6 1.9626 1.3957 -2.3874 7 7 1.0860 0.4166 -2.4609 8 14 2.9304 1.8985 -3.9039 9 1 4.2410 1.2003 -3.9088 10 1 2.1678 1.5281 -5.1231 11 1 3.1518 3.3668 -3.8855 12 6 2.3468 2.0420 1.2656 13 1 2.6904 3.0573 1.0669 14 6 3.4518 1.2593 1.9779 15 6 1.1020 2.0901 2.1539 16 7 0.0068 2.7349 1.4253 17 6 -1.1959 2.8883 2.0139 18 8 -1.3719 2.4919 3.1503 19 6 -2.2970 3.5360 1.2813 20 6 -3.5274 3.7229 1.8099 21 16 -4.5127 4.5037 0.6515 22 6 -3.2264 4.5349 -0.4712 23 6 -3.3122 5.1164 -1.8588 24 6 -4.5766 5.8986 -2.2201 25 6 -4.3393 4.5098 -2.8168 26 7 -2.1723 3.9978 0.0342 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.9423 -0.0436 -3.3026 33 1 3.1078 0.2443 2.1766 34 1 4.3386 1.2251 1.3450 35 1 3.6964 1.7512 2.9193 36 1 1.3221 2.6591 3.0571 37 1 0.8101 1.0757 2.4255 38 1 0.1469 3.0508 0.5189 39 1 -3.8370 3.4272 2.8014 40 1 -2.3690 5.4599 -2.2838 41 1 -5.3465 5.9920 -1.4543 42 1 -4.4655 6.7567 -2.8828 43 1 -4.0720 4.4544 -3.8721 44 1 -4.9528 3.6897 -2.4436 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157265744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:37 Heat of formation + Delta-G solvation = 66.106161 kcal Electronic energy + Delta-G solvation = -25953.251475 eV Core-core repulsion = 22420.643331 eV Total energy + Delta-G solvation = -3532.608144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.26906 -38.63692 -37.24717 -36.77322 -33.84340 -32.07831 -30.45400 -30.10607 -28.39285 -26.73784 -25.28455 -23.73720 -23.01119 -22.63554 -21.68406 -20.72246 -19.51980 -19.00906 -18.16568 -16.90616 -16.42780 -16.19124 -15.40930 -15.24359 -15.07390 -14.55367 -14.16964 -13.92636 -13.64894 -13.42307 -12.88227 -12.59086 -12.40839 -12.40054 -12.08771 -12.00255 -11.83775 -11.67404 -11.42380 -11.08366 -10.98828 -10.75892 -10.73361 -10.67525 -10.56050 -10.25677 -9.80009 -9.78606 -9.62748 -9.56588 -9.53248 -9.22947 -8.79868 -8.35786 -8.17072 -6.96146 -5.78881 -2.99176 0.57313 1.22483 1.63144 2.16310 3.41867 3.50311 3.52129 3.55047 3.64311 3.85024 3.99286 4.51753 4.58306 4.74055 4.84648 5.11208 5.26140 5.28246 5.37267 5.43016 5.45538 5.59866 5.65274 5.83219 5.87305 5.94528 6.02383 6.10758 6.16671 6.34212 6.36074 6.67643 6.75191 6.89280 7.04197 7.06060 7.18315 7.28012 7.56942 7.73804 7.86974 8.19091 8.21235 8.35430 8.71589 9.26107 9.89861 10.35015 11.24759 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.004993 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.565150 B = 5606.796340 C = 7492.827455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.166 3.834 3 N -0.593 5.593 4 C -0.259 4.259 5 H 0.075 0.925 6 C 0.010 3.990 7 N -0.879 5.879 8 Si 0.879 3.121 9 H -0.291 1.291 10 H -0.296 1.296 11 H -0.283 1.283 12 C 0.161 3.839 13 H 0.068 0.932 14 C -0.157 4.157 15 C 0.103 3.897 16 N -0.678 5.678 17 C 0.585 3.415 18 O -0.557 6.557 19 C 0.026 3.974 20 C -0.234 4.234 21 S 0.184 5.816 22 C 0.063 3.937 23 C -0.082 4.082 24 C -0.171 4.171 25 C -0.157 4.157 26 N -0.426 5.426 27 H 0.012 0.988 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.006 0.994 32 H 0.251 0.749 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.422 0.578 39 H 0.187 0.813 40 H 0.137 0.863 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 8.915 3.641 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.315 5.315 4 C -0.386 4.386 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.524 5.524 8 Si 0.709 3.291 9 H -0.218 1.218 10 H -0.223 1.223 11 H -0.209 1.209 12 C 0.052 3.948 13 H 0.086 0.914 14 C -0.217 4.217 15 C -0.024 4.024 16 N -0.328 5.328 17 C 0.368 3.632 18 O -0.437 6.437 19 C -0.109 4.109 20 C -0.376 4.376 21 S 0.442 5.558 22 C -0.216 4.216 23 C -0.104 4.104 24 C -0.210 4.210 25 C -0.196 4.196 26 N -0.140 5.140 27 H 0.031 0.969 28 H 0.037 0.963 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.261 0.739 39 H 0.204 0.796 40 H 0.155 0.845 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.534 8.826 3.969 15.056 hybrid contribution 1.261 -0.256 -0.750 1.490 sum -10.273 8.569 3.220 13.760 Atomic orbital electron populations 1.22415 0.99195 0.97813 1.01439 1.20895 0.92443 0.84523 0.97989 1.44256 1.75578 1.11201 1.00469 1.19186 1.41453 0.94742 0.83262 0.90686 1.24660 0.98730 0.98302 0.97068 1.70295 1.30401 1.26708 1.24974 0.86633 0.81264 0.77926 0.83275 1.21808 1.22266 1.20865 1.20549 0.91101 0.96498 0.86638 0.91363 1.22179 0.99667 1.00595 0.99235 1.22102 0.88208 0.97312 0.94729 1.45759 1.09779 1.57720 1.19520 1.17043 0.81923 0.79074 0.85163 1.90753 1.82876 1.51986 1.18042 1.20560 0.95240 1.04330 0.90798 1.26542 0.97483 1.06851 1.06752 1.82533 1.16773 1.52182 1.04350 1.26194 0.92211 1.02763 1.00461 1.20415 0.96862 1.04144 0.88998 1.23145 0.97874 0.96150 1.03786 1.23137 1.00818 0.96372 0.99297 1.66874 1.27983 1.10041 1.09064 0.96912 0.96307 0.89301 0.89791 0.97607 0.93890 0.92953 0.92217 0.93646 0.92651 0.91836 0.73943 0.79564 0.84539 0.88504 0.87282 0.87305 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.27 37.16 0.34 -3.23 16 2 C 0.17 3.95 5.01 -4.04 -0.02 3.93 16 3 N -0.59 -13.72 1.92 -165.65 -0.32 -14.04 16 4 C -0.26 -6.60 9.38 -15.06 -0.14 -6.74 16 5 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 6 C 0.01 0.28 4.97 -17.43 -0.09 0.19 16 7 N -0.88 -23.90 8.40 55.49 0.47 -23.43 16 8 Si 0.88 20.99 29.65 -169.99 -5.04 15.95 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.16 3.13 2.87 -67.93 -0.19 2.94 16 13 H 0.07 1.32 7.78 -51.93 -0.40 0.91 16 14 C -0.16 -2.66 9.18 37.16 0.34 -2.32 16 15 C 0.10 1.95 4.32 -4.04 -0.02 1.94 16 16 N -0.68 -13.63 3.99 -61.44 -0.24 -13.87 16 17 C 0.59 11.75 7.55 -12.59 -0.10 11.66 16 18 O -0.56 -12.05 16.71 5.25 0.09 -11.96 16 19 C 0.03 0.46 6.70 -84.52 -0.57 -0.11 16 20 C -0.23 -3.40 10.62 29.66 0.31 -3.09 16 21 S 0.18 2.07 21.65 -107.50 -2.33 -0.26 16 22 C 0.06 0.90 6.99 -13.61 -0.10 0.80 16 23 C -0.08 -0.95 6.33 -91.77 -0.58 -1.54 16 24 C -0.17 -1.39 10.01 -26.73 -0.27 -1.65 16 25 C -0.16 -1.51 10.23 -26.73 -0.27 -1.78 16 26 N -0.43 -7.53 10.12 -8.51 -0.09 -7.61 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.02 0.43 4.84 -51.93 -0.25 0.18 16 29 H 0.09 2.40 6.30 -51.93 -0.33 2.07 16 30 H 0.08 2.24 5.84 -51.93 -0.30 1.93 16 31 H 0.01 0.13 6.43 -51.93 -0.33 -0.21 16 32 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.30 6.92 -51.93 -0.36 0.94 16 38 H 0.42 9.11 7.41 -40.82 -0.30 8.81 16 39 H 0.19 2.43 8.03 -52.49 -0.42 2.01 16 40 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.10 0.70 7.21 -51.93 -0.37 0.32 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -29.64 365.88 -9.64 -39.28 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.35 Total: 9.44 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.34 Total: 1.00 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.18 Total: -58.96 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.04 Total: 15.95 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.33 Total: -0.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.64 -9.64 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157265744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.384 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds