Wall clock time and date at job start Tue Mar 31 2020 13:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47419 * 2 1 4 4 C 1.36941 * 119.99909 * 274.04294 * 3 2 1 5 5 H 1.07999 * 120.00027 * 174.70890 * 4 3 2 6 6 C 1.38817 * 119.99752 * 354.70173 * 4 3 2 7 7 N 1.31614 * 120.00086 * 31.38848 * 6 4 3 8 8 Si 1.86793 * 119.99719 * 211.38687 * 6 4 3 9 9 H 1.48500 * 109.47286 * 85.00303 * 8 6 4 10 10 H 1.48507 * 109.47004 * 204.99639 * 8 6 4 11 11 H 1.48501 * 109.47656 * 324.99784 * 8 6 4 12 12 C 1.46497 * 119.99888 * 94.03498 * 3 2 1 13 13 H 1.09005 * 109.46947 * 180.02562 * 12 3 2 14 14 C 1.53006 * 109.46754 * 60.00568 * 12 3 2 15 15 C 1.52998 * 109.47461 * 300.00470 * 12 3 2 16 16 N 1.46498 * 109.47032 * 304.99713 * 15 12 3 17 17 C 1.34770 * 120.00121 * 179.97438 * 16 15 12 18 18 O 1.21634 * 120.00378 * 0.02562 * 17 16 15 19 19 C 1.47269 * 120.00091 * 180.02562 * 17 16 15 20 20 C 1.35215 * 123.14089 * 180.02562 * 19 17 16 21 21 S 1.70943 * 108.82683 * 179.97438 * 20 19 17 22 22 C 1.70774 * 91.12785 * 0.02562 * 21 20 19 23 23 C 1.50700 * 124.71793 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49989 * 8.59994 * 23 22 21 25 25 C 1.52993 * 117.49933 * 299.97484 * 23 22 21 26 26 N 1.28644 * 110.56158 * 359.76379 * 22 21 20 27 27 H 1.08993 * 109.47003 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47197 * 300.00588 * 1 2 3 29 29 H 1.09004 * 109.47248 * 59.99680 * 1 2 3 30 30 H 1.09004 * 109.47057 * 240.00174 * 2 1 3 31 31 H 1.08998 * 109.46876 * 119.99721 * 2 1 3 32 32 H 0.97001 * 120.00109 * 179.97438 * 7 6 4 33 33 H 1.08992 * 109.47205 * 299.99297 * 14 12 3 34 34 H 1.09001 * 109.47113 * 60.00122 * 14 12 3 35 35 H 1.08998 * 109.46526 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.46727 * 185.00089 * 15 12 3 37 37 H 1.08996 * 109.47158 * 64.99966 * 15 12 3 38 38 H 0.97001 * 120.00012 * 0.02562 * 16 15 12 39 39 H 1.08000 * 125.58706 * 359.96226 * 20 19 17 40 40 H 1.09004 * 115.54805 * 154.29997 * 23 22 21 41 41 H 1.08997 * 117.49466 * 359.97438 * 24 23 22 42 42 H 1.08994 * 117.50214 * 145.02229 * 24 23 22 43 43 H 1.09005 * 117.49972 * 214.98151 * 25 23 22 44 44 H 1.09004 * 117.50142 * 359.97331 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4455 3.0983 -1.1789 6 6 1.9626 1.3957 -2.3874 7 7 1.0860 0.4166 -2.4609 8 14 2.9304 1.8985 -3.9039 9 1 4.2410 1.2003 -3.9088 10 1 2.1678 1.5281 -5.1231 11 1 3.1518 3.3668 -3.8855 12 6 2.3468 2.0420 1.2656 13 1 2.6904 3.0573 1.0669 14 6 3.4518 1.2593 1.9779 15 6 1.1020 2.0901 2.1539 16 7 0.0068 2.7349 1.4253 17 6 -1.1959 2.8883 2.0139 18 8 -1.3719 2.4919 3.1503 19 6 -2.2970 3.5360 1.2813 20 6 -3.5274 3.7229 1.8099 21 16 -4.5127 4.5037 0.6515 22 6 -3.2264 4.5349 -0.4712 23 6 -3.3122 5.1164 -1.8588 24 6 -4.5766 5.8986 -2.2201 25 6 -4.3393 4.5098 -2.8168 26 7 -2.1723 3.9978 0.0342 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.9423 -0.0436 -3.3026 33 1 3.1078 0.2443 2.1766 34 1 4.3386 1.2251 1.3450 35 1 3.6964 1.7512 2.9193 36 1 1.3221 2.6591 3.0571 37 1 0.8101 1.0757 2.4255 38 1 0.1469 3.0508 0.5189 39 1 -3.8370 3.4272 2.8014 40 1 -2.3690 5.4599 -2.2838 41 1 -5.3465 5.9920 -1.4543 42 1 -4.4655 6.7567 -2.8828 43 1 -4.0720 4.4544 -3.8721 44 1 -4.9528 3.6897 -2.4436 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157265744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:36 Heat of formation + Delta-G solvation = 49.140347 kcal Electronic energy + Delta-G solvation = -25953.987168 eV Core-core repulsion = 22420.643331 eV Total energy + Delta-G solvation = -3533.343837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55432 -40.01109 -38.66190 -37.93273 -35.56411 -33.78722 -32.02978 -31.57343 -30.25752 -28.06537 -26.46705 -25.65780 -24.30826 -23.47434 -23.31974 -21.78946 -20.96726 -20.58446 -19.39934 -18.78710 -17.73149 -17.24205 -17.15659 -16.66253 -16.51798 -15.86939 -15.60636 -15.31765 -15.02281 -14.79273 -14.49158 -14.33319 -14.11060 -13.70365 -13.55168 -13.29281 -13.18017 -13.02572 -12.78142 -12.57991 -12.47803 -12.40860 -12.39827 -12.11702 -11.87543 -11.63035 -11.52516 -11.42533 -11.22519 -11.15889 -10.78988 -10.57595 -10.19929 -10.06711 -9.69062 -8.88333 -7.79688 -4.99177 -0.54331 0.21364 0.53949 0.89654 1.49182 1.55190 1.58904 2.25394 2.35841 2.57504 2.76569 3.02460 3.28452 3.63563 3.69566 3.81630 4.01954 4.03582 4.09915 4.15866 4.36618 4.41908 4.58067 4.65169 4.71386 4.73389 4.76860 4.82773 4.97641 4.99765 5.08042 5.10119 5.19031 5.23316 5.26706 5.33485 5.40135 5.57552 5.70639 5.87595 6.16973 6.36567 6.38407 6.68912 7.15569 7.26292 7.98019 8.39670 9.22724 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.004993 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.565150 B = 5606.796340 C = 7492.827455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.174 3.826 3 N -0.600 5.600 4 C -0.255 4.255 5 H 0.075 0.925 6 C -0.035 4.035 7 N -0.901 5.901 8 Si 0.935 3.065 9 H -0.295 1.295 10 H -0.304 1.304 11 H -0.277 1.277 12 C 0.159 3.841 13 H 0.070 0.930 14 C -0.147 4.147 15 C 0.109 3.891 16 N -0.683 5.683 17 C 0.581 3.419 18 O -0.581 6.581 19 C -0.011 4.011 20 C -0.242 4.242 21 S 0.297 5.703 22 C 0.043 3.957 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.160 4.160 26 N -0.471 5.471 27 H 0.016 0.984 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.243 0.757 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.414 0.586 39 H 0.198 0.802 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 10.437 4.043 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 N -0.322 5.322 4 C -0.384 4.384 5 H 0.093 0.907 6 C -0.231 4.231 7 N -0.547 5.547 8 Si 0.766 3.234 9 H -0.223 1.223 10 H -0.232 1.232 11 H -0.202 1.202 12 C 0.051 3.949 13 H 0.088 0.912 14 C -0.206 4.206 15 C -0.017 4.017 16 N -0.331 5.331 17 C 0.365 3.635 18 O -0.463 6.463 19 C -0.147 4.147 20 C -0.385 4.385 21 S 0.555 5.445 22 C -0.236 4.236 23 C -0.138 4.138 24 C -0.177 4.177 25 C -0.199 4.199 26 N -0.186 5.186 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.251 0.749 39 H 0.215 0.785 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.133 0.867 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.825 10.377 4.384 17.070 hybrid contribution 1.543 -0.649 -0.850 1.877 sum -11.282 9.727 3.534 15.310 Atomic orbital electron populations 1.22197 0.99472 0.97497 0.99827 1.20689 0.92027 0.84994 0.97367 1.44356 1.75633 1.10943 1.01277 1.19374 1.40039 0.94793 0.84205 0.90744 1.25175 0.99622 0.99142 0.99174 1.70434 1.31494 1.27974 1.24835 0.85748 0.79503 0.77669 0.80516 1.22309 1.23168 1.20244 1.20758 0.91969 0.96743 0.85409 0.91156 1.22055 0.98110 1.00227 1.00252 1.22044 0.87702 0.96786 0.95135 1.45819 1.10342 1.57859 1.19093 1.17430 0.82352 0.78627 0.85054 1.90712 1.83364 1.53240 1.18975 1.20337 0.95725 1.06904 0.91685 1.26908 0.97365 1.06090 1.08134 1.82015 1.12927 1.48980 1.00530 1.26696 0.92990 1.01939 1.01943 1.20522 0.97913 1.06864 0.88483 1.23300 0.95199 0.95861 1.03327 1.23248 0.99748 0.97623 0.99264 1.66844 1.30427 1.11873 1.09481 0.96531 0.96146 0.92410 0.92591 0.95826 0.94724 0.93282 0.92709 0.90433 0.90896 0.93216 0.74930 0.78472 0.85982 0.87059 0.85114 0.86652 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 9.27 71.98 0.67 -5.73 16 2 C 0.17 8.39 5.01 86.38 0.43 8.83 16 3 N -0.60 -27.95 1.92 -678.00 -1.30 -29.25 16 4 C -0.26 -13.17 9.38 84.03 0.79 -12.39 16 5 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 6 C -0.04 -1.89 4.97 84.86 0.42 -1.47 16 7 N -0.90 -50.39 8.40 21.65 0.18 -50.21 16 8 Si 0.94 44.01 29.65 68.60 2.03 46.05 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.16 6.07 2.87 44.99 0.13 6.20 16 13 H 0.07 2.66 7.78 -2.38 -0.02 2.64 16 14 C -0.15 -4.72 9.18 71.98 0.66 -4.06 16 15 C 0.11 4.13 4.32 86.38 0.37 4.50 16 16 N -0.68 -28.05 3.99 -466.53 -1.86 -29.91 16 17 C 0.58 23.85 7.55 86.62 0.65 24.50 16 18 O -0.58 -25.46 16.71 -4.14 -0.07 -25.53 16 19 C -0.01 -0.42 6.70 40.56 0.27 -0.14 16 20 C -0.24 -6.79 10.62 67.12 0.71 -6.08 16 21 S 0.30 5.93 21.65 -56.49 -1.22 4.70 16 22 C 0.04 1.18 6.99 88.58 0.62 1.80 16 23 C -0.12 -2.59 6.33 -11.54 -0.07 -2.66 16 24 C -0.14 -1.83 10.01 30.60 0.31 -1.52 16 25 C -0.16 -2.79 10.23 30.59 0.31 -2.48 16 26 N -0.47 -17.03 10.12 -180.82 -1.83 -18.86 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.02 0.95 4.84 -2.39 -0.01 0.94 16 29 H 0.06 3.22 6.30 -2.39 -0.02 3.20 16 30 H 0.06 3.04 5.84 -2.38 -0.01 3.03 16 31 H 0.02 1.04 6.43 -2.39 -0.02 1.03 16 32 H 0.24 13.50 8.31 -92.71 -0.77 12.73 16 33 H 0.05 1.60 6.66 -2.39 -0.02 1.59 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.05 2.02 6.92 -2.39 -0.02 2.00 16 38 H 0.41 18.50 7.41 -92.71 -0.69 17.81 16 39 H 0.20 4.91 8.03 -2.91 -0.02 4.88 16 40 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.11 1.13 7.21 -2.39 -0.02 1.12 16 42 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -66.00 365.88 2.55 -63.45 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.34 Total: 30.25 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.28 Total: 9.30 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -4.81 Total: -128.22 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.07 Total: -25.53 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.22 Total: 4.70 kcal Total: -66.00 2.55 -63.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157265744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.588 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds