Wall clock time and date at job start Tue Mar 31 2020 14:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00688 * 3 2 1 5 5 H 1.48505 * 109.46687 * 30.00130 * 3 2 1 6 6 H 1.48498 * 109.47151 * 149.99800 * 3 2 1 7 7 C 1.37878 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99746 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46745 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46962 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.39007 * 119.99962 * 180.02562 * 12 11 10 14 14 N 1.32441 * 119.69872 * 359.97438 * 13 12 11 15 15 C 1.32024 * 121.60813 * 180.02562 * 14 13 12 16 16 Cl 1.73599 * 119.59008 * 179.97438 * 15 14 13 17 17 C 1.38249 * 120.82283 * 0.02562 * 15 14 13 18 18 C 1.38776 * 119.31186 * 359.97438 * 17 15 14 19 19 C 1.38382 * 118.52254 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.43250 * 180.27428 * 19 18 17 21 21 N 1.46895 * 109.47512 * 259.71756 * 20 19 18 22 22 C 1.48533 * 110.99608 * 52.60199 * 21 20 19 23 23 C 1.54941 * 103.22560 * 159.72293 * 22 21 20 24 24 C 1.54589 * 102.92035 * 322.58936 * 23 22 21 25 25 C 1.47895 * 111.00496 * 170.00367 * 21 20 19 26 26 H 0.97000 * 119.99813 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46834 * 60.00033 * 9 7 2 28 28 H 1.09001 * 109.47104 * 299.99730 * 9 7 2 29 29 H 1.09000 * 109.47297 * 60.00476 * 10 9 7 30 30 H 1.08993 * 109.47383 * 300.00096 * 10 9 7 31 31 H 1.09005 * 109.46930 * 60.00102 * 11 10 9 32 32 H 1.08993 * 109.47383 * 300.00381 * 11 10 9 33 33 H 0.97002 * 119.99976 * 0.02562 * 12 11 10 34 34 H 1.07997 * 120.34025 * 179.97438 * 17 15 14 35 35 H 1.08003 * 120.73810 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.47408 * 19.72662 * 20 19 18 37 37 H 1.09013 * 109.46901 * 139.72105 * 20 19 18 38 38 H 1.09000 * 110.67240 * 278.15835 * 22 21 20 39 39 H 1.09001 * 110.66827 * 41.29583 * 22 21 20 40 40 H 1.09008 * 110.72333 * 204.23113 * 23 22 21 41 41 H 1.09002 * 110.72046 * 80.94933 * 23 22 21 42 42 H 1.09005 * 110.31273 * 263.03537 * 24 23 22 43 43 H 1.09003 * 110.30896 * 140.87794 * 24 23 22 44 44 H 1.09001 * 109.91392 * 333.50875 * 25 21 20 45 45 H 1.08999 * 109.91888 * 94.60682 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 7 6.0400 -4.0176 -0.0015 13 6 7.4066 -4.2716 -0.0019 14 7 8.2619 -3.2604 -0.0034 15 6 9.5673 -3.4582 -0.0043 16 17 10.6410 -2.0941 -0.0069 17 6 10.0898 -4.7382 -0.0042 18 6 9.2262 -5.8245 -0.0026 19 6 7.8632 -5.5851 -0.0017 20 6 6.8867 -6.7329 0.0063 21 7 6.3788 -6.9532 -1.3544 22 6 7.4960 -7.1009 -2.3220 23 6 6.8334 -7.8256 -3.5205 24 6 5.8548 -8.8057 -2.8337 25 6 5.6067 -8.2121 -1.4346 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6800 -0.8912 29 1 3.6580 -3.1505 -0.8908 30 1 3.6586 -3.1501 0.8892 31 1 5.9156 -2.1223 0.8873 32 1 5.9142 -2.1229 -0.8926 33 1 5.4096 -4.7549 -0.0008 34 1 11.1589 -4.8910 -0.0053 35 1 9.6093 -6.8343 -0.0021 36 1 7.3885 -7.6345 0.3573 37 1 6.0551 -6.4978 0.6708 38 1 7.8747 -6.1245 -2.6244 39 1 8.2943 -7.7099 -1.8979 40 1 7.5781 -8.3686 -4.1025 41 1 6.2928 -7.1174 -4.1485 42 1 6.3058 -9.7946 -2.7506 43 1 4.9205 -8.8611 -3.3924 44 1 5.9508 -8.9081 -0.6696 45 1 4.5451 -8.0059 -1.2984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157640922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:17 Heat of formation + Delta-G solvation = 24.935047 kcal Electronic energy + Delta-G solvation = -24763.505945 eV Core-core repulsion = 21227.068781 eV Total energy + Delta-G solvation = -3536.437164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70200 -38.88622 -36.92685 -36.11430 -34.03031 -33.60543 -31.97254 -31.20745 -29.61743 -29.01053 -26.79954 -25.93848 -23.57766 -22.50786 -21.85488 -21.08492 -21.00208 -20.21425 -17.85292 -17.06624 -16.58493 -16.42716 -16.18987 -15.49532 -15.19948 -14.93880 -14.42529 -14.22559 -14.07353 -13.86271 -13.77988 -13.35671 -13.03251 -12.65013 -12.54862 -12.46788 -11.95771 -11.86961 -11.67833 -11.64932 -11.45473 -11.34575 -11.32302 -11.00462 -10.90333 -10.83229 -10.27583 -10.01252 -9.81210 -9.69272 -9.53760 -9.51391 -9.18970 -8.69090 -8.52495 -7.61994 -6.03380 -4.01670 0.91600 1.30903 1.73940 3.33728 3.37230 3.41213 3.45939 3.53879 3.90550 4.29930 4.40453 4.47321 4.48411 4.64134 4.68500 4.83103 4.98810 5.01341 5.05314 5.21578 5.25358 5.30945 5.39535 5.44192 5.53485 5.56820 5.62724 5.73240 5.74745 5.75062 5.83701 5.91490 6.01404 6.11129 6.21239 6.52605 6.57573 6.62030 6.72399 6.82398 7.18186 7.27636 7.40426 7.41384 7.79731 8.13766 8.53956 9.00881 9.59155 11.09954 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.009030 B = 0.003544 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.080172 B = 7898.681039 C =10474.204395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.113 4.113 11 C 0.124 3.876 12 N -0.702 5.702 13 C 0.449 3.551 14 N -0.539 5.539 15 C 0.234 3.766 16 Cl -0.040 7.040 17 C -0.230 4.230 18 C -0.016 4.016 19 C -0.209 4.209 20 C 0.099 3.901 21 N -0.512 5.512 22 C 0.041 3.959 23 C -0.125 4.125 24 C -0.130 4.130 25 C 0.034 3.966 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.389 -18.657 -2.437 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.151 4.151 11 C 0.001 3.999 12 N -0.332 5.332 13 C 0.209 3.791 14 N -0.260 5.260 15 C 0.067 3.933 16 Cl -0.012 7.012 17 C -0.255 4.255 18 C -0.043 4.043 19 C -0.217 4.217 20 C -0.029 4.029 21 N -0.236 5.236 22 C -0.087 4.087 23 C -0.163 4.163 24 C -0.168 4.168 25 C -0.094 4.094 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.530 -16.912 -2.544 26.720 hybrid contribution 1.031 -0.612 0.250 1.225 sum 21.560 -17.524 -2.294 27.879 Atomic orbital electron populations 1.69915 1.06315 1.26899 1.51171 1.25022 0.94731 0.99199 0.94502 0.86784 0.80430 0.83553 0.78594 1.20246 1.21410 1.18867 1.21108 0.89361 0.94477 1.50899 0.91043 1.19483 0.97186 0.91484 0.96577 1.21692 0.90900 1.00902 1.01632 1.21609 0.95701 0.80921 1.01667 1.44998 1.01581 1.09763 1.76827 1.17862 0.85733 0.87062 0.88413 1.66425 1.02143 1.35079 1.22323 1.21209 0.88535 0.87477 0.96059 1.98401 1.60843 1.45616 1.96337 1.21330 1.01219 0.90624 1.12295 1.21093 0.91519 0.98764 0.92882 1.19959 0.94753 0.93693 1.13327 1.20970 0.96316 0.94671 0.90990 1.64906 1.20128 1.33578 1.05018 1.23169 0.92753 1.00313 0.92460 1.22492 0.98307 0.98163 0.97374 1.22385 1.00228 0.98487 0.95737 1.22907 0.99837 0.89923 0.96735 0.92743 0.96384 0.96780 0.92126 0.92335 0.92072 0.92001 0.74752 0.84492 0.84707 0.93434 0.89804 0.90211 0.93880 0.91209 0.90587 0.91685 0.90855 0.93766 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 10 C -0.11 -2.19 5.27 -26.73 -0.14 -2.33 16 11 C 0.12 2.11 5.69 -4.04 -0.02 2.09 16 12 N -0.70 -10.15 5.62 -60.43 -0.34 -10.49 16 13 C 0.45 6.27 7.46 -155.01 -1.16 5.11 16 14 N -0.54 -8.25 9.54 -9.55 -0.09 -8.34 16 15 C 0.23 3.05 7.27 -17.46 -0.13 2.92 16 16 Cl -0.04 -0.49 29.10 -51.86 -1.51 -2.00 16 17 C -0.23 -2.35 9.87 -39.38 -0.39 -2.74 16 18 C -0.02 -0.15 9.16 -39.33 -0.36 -0.51 16 19 C -0.21 -2.29 4.33 -104.26 -0.45 -2.74 16 20 C 0.10 0.91 4.47 -4.98 -0.02 0.89 16 21 N -0.51 -4.93 5.39 -231.90 -1.25 -6.18 16 22 C 0.04 0.36 5.23 -1.90 -0.01 0.35 16 23 C -0.13 -0.98 7.06 -24.87 -0.18 -1.16 16 24 C -0.13 -0.94 6.93 -25.38 -0.18 -1.11 16 25 C 0.03 0.27 6.70 -2.76 -0.02 0.26 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.41 5.47 6.69 -40.82 -0.27 5.19 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.05 0.37 7.70 -51.93 -0.40 -0.03 16 37 H 0.08 0.79 7.12 -51.92 -0.37 0.42 16 38 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 39 H 0.04 0.34 7.84 -51.93 -0.41 -0.07 16 40 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.04 0.32 7.57 -51.93 -0.39 -0.08 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -31.42 375.72 -12.27 -43.69 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.26 Total: 0.25 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.59 Total: -12.67 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.91 Total: -52.30 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.42 -12.27 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.626 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds