Wall clock time and date at job start Tue Mar 31 2020 14:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00688 * 3 2 1 5 5 H 1.48505 * 109.46687 * 30.00130 * 3 2 1 6 6 H 1.48498 * 109.47151 * 149.99800 * 3 2 1 7 7 C 1.37878 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99746 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46745 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46962 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.39007 * 119.99962 * 180.02562 * 12 11 10 14 14 N 1.32441 * 119.69872 * 359.97438 * 13 12 11 15 15 C 1.32024 * 121.60813 * 180.02562 * 14 13 12 16 16 Cl 1.73599 * 119.59008 * 179.97438 * 15 14 13 17 17 C 1.38249 * 120.82283 * 0.02562 * 15 14 13 18 18 C 1.38776 * 119.31186 * 359.97438 * 17 15 14 19 19 C 1.38382 * 118.52254 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.43250 * 180.27428 * 19 18 17 21 21 N 1.46895 * 109.47512 * 259.71756 * 20 19 18 22 22 C 1.48533 * 110.99608 * 52.60199 * 21 20 19 23 23 C 1.54941 * 103.22560 * 159.72293 * 22 21 20 24 24 C 1.54589 * 102.92035 * 322.58936 * 23 22 21 25 25 C 1.47895 * 111.00496 * 170.00367 * 21 20 19 26 26 H 0.97000 * 119.99813 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46834 * 60.00033 * 9 7 2 28 28 H 1.09001 * 109.47104 * 299.99730 * 9 7 2 29 29 H 1.09000 * 109.47297 * 60.00476 * 10 9 7 30 30 H 1.08993 * 109.47383 * 300.00096 * 10 9 7 31 31 H 1.09005 * 109.46930 * 60.00102 * 11 10 9 32 32 H 1.08993 * 109.47383 * 300.00381 * 11 10 9 33 33 H 0.97002 * 119.99976 * 0.02562 * 12 11 10 34 34 H 1.07997 * 120.34025 * 179.97438 * 17 15 14 35 35 H 1.08003 * 120.73810 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.47408 * 19.72662 * 20 19 18 37 37 H 1.09013 * 109.46901 * 139.72105 * 20 19 18 38 38 H 1.09000 * 110.67240 * 278.15835 * 22 21 20 39 39 H 1.09001 * 110.66827 * 41.29583 * 22 21 20 40 40 H 1.09008 * 110.72333 * 204.23113 * 23 22 21 41 41 H 1.09002 * 110.72046 * 80.94933 * 23 22 21 42 42 H 1.09005 * 110.31273 * 263.03537 * 24 23 22 43 43 H 1.09003 * 110.30896 * 140.87794 * 24 23 22 44 44 H 1.09001 * 109.91392 * 333.50875 * 25 21 20 45 45 H 1.08999 * 109.91888 * 94.60682 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 7 6.0400 -4.0176 -0.0015 13 6 7.4066 -4.2716 -0.0019 14 7 8.2619 -3.2604 -0.0034 15 6 9.5673 -3.4582 -0.0043 16 17 10.6410 -2.0941 -0.0069 17 6 10.0898 -4.7382 -0.0042 18 6 9.2262 -5.8245 -0.0026 19 6 7.8632 -5.5851 -0.0017 20 6 6.8867 -6.7329 0.0063 21 7 6.3788 -6.9532 -1.3544 22 6 7.4960 -7.1009 -2.3220 23 6 6.8334 -7.8256 -3.5205 24 6 5.8548 -8.8057 -2.8337 25 6 5.6067 -8.2121 -1.4346 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6800 -0.8912 29 1 3.6580 -3.1505 -0.8908 30 1 3.6586 -3.1501 0.8892 31 1 5.9156 -2.1223 0.8873 32 1 5.9142 -2.1229 -0.8926 33 1 5.4096 -4.7549 -0.0008 34 1 11.1589 -4.8910 -0.0053 35 1 9.6093 -6.8343 -0.0021 36 1 7.3885 -7.6345 0.3573 37 1 6.0551 -6.4978 0.6708 38 1 7.8747 -6.1245 -2.6244 39 1 8.2943 -7.7099 -1.8979 40 1 7.5781 -8.3686 -4.1025 41 1 6.2928 -7.1174 -4.1485 42 1 6.3058 -9.7946 -2.7506 43 1 4.9205 -8.8611 -3.3924 44 1 5.9508 -8.9081 -0.6696 45 1 4.5451 -8.0059 -1.2984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157640922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:17 Heat of formation + Delta-G solvation = 5.580070 kcal Electronic energy + Delta-G solvation = -24764.345240 eV Core-core repulsion = 21227.068781 eV Total energy + Delta-G solvation = -3537.276459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59213 -39.57903 -37.95289 -37.29527 -35.46485 -34.74305 -33.67658 -32.19612 -30.72746 -29.67871 -28.40046 -26.71020 -25.04014 -23.34195 -23.12512 -22.09259 -21.67289 -21.56392 -19.03807 -18.75196 -17.86195 -17.11812 -16.92682 -16.44011 -16.37374 -16.33545 -15.84201 -15.38506 -15.17306 -14.82400 -14.71655 -14.41188 -14.17600 -13.98758 -13.75562 -13.69684 -13.18714 -12.95736 -12.75529 -12.60884 -12.48365 -12.32247 -12.25055 -12.15982 -11.96579 -11.86871 -11.70347 -11.65123 -11.40937 -11.33276 -11.08316 -10.77013 -10.53610 -10.50464 -9.34188 -8.62886 -8.30204 -6.34084 0.03704 0.44550 0.83656 1.36013 1.37236 1.49683 2.29656 2.35714 2.67817 3.05377 3.19470 3.55591 3.71173 3.79702 3.88600 3.98794 4.13673 4.16492 4.20804 4.22080 4.29865 4.39123 4.52005 4.54683 4.64678 4.73183 4.77264 4.91171 4.91561 4.95353 4.96300 5.00170 5.03502 5.10555 5.16228 5.24552 5.34631 5.41144 5.50480 5.55002 5.63743 5.98141 6.05082 6.10866 6.27448 6.37251 6.73427 7.14580 7.30637 8.86401 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.009030 B = 0.003544 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.080172 B = 7898.681039 C =10474.204395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.035 0.965 9 C -0.008 4.008 10 C -0.099 4.099 11 C 0.146 3.854 12 N -0.707 5.707 13 C 0.425 3.575 14 N -0.575 5.575 15 C 0.206 3.794 16 Cl -0.043 7.043 17 C -0.213 4.213 18 C -0.009 4.009 19 C -0.200 4.200 20 C 0.101 3.899 21 N -0.533 5.533 22 C 0.043 3.957 23 C -0.125 4.125 24 C -0.127 4.127 25 C 0.033 3.967 26 H 0.266 0.734 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.418 0.582 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.229 -20.246 -2.338 31.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.054 0.946 9 C -0.046 4.046 10 C -0.137 4.137 11 C 0.022 3.978 12 N -0.340 5.340 13 C 0.188 3.812 14 N -0.297 5.297 15 C 0.042 3.958 16 Cl -0.015 7.015 17 C -0.237 4.237 18 C -0.034 4.034 19 C -0.208 4.208 20 C -0.027 4.027 21 N -0.257 5.257 22 C -0.084 4.084 23 C -0.163 4.163 24 C -0.165 4.165 25 C -0.095 4.095 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.257 0.743 34 H 0.183 0.817 35 H 0.192 0.808 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.417 -18.527 -2.446 29.960 hybrid contribution 0.163 -0.239 0.205 0.355 sum 23.580 -18.767 -2.241 30.220 Atomic orbital electron populations 1.70059 1.08197 1.28147 1.52669 1.25972 0.95594 1.03381 0.94128 0.85698 0.79514 0.78490 0.79219 1.19227 1.20811 1.17215 1.21454 0.91874 0.93233 1.50352 0.94637 1.19423 0.94071 0.94446 0.96639 1.21452 0.92718 0.98050 1.01513 1.21108 0.93494 0.82599 1.00636 1.44709 1.02319 1.08435 1.78497 1.18101 0.85077 0.88207 0.89864 1.66278 1.03456 1.36509 1.23412 1.21522 0.88066 0.88582 0.97666 1.98391 1.60593 1.46060 1.96442 1.21712 1.02845 0.89579 1.09614 1.21543 0.90485 1.00327 0.91093 1.20188 0.96006 0.92852 1.11724 1.20983 0.95998 0.94818 0.90889 1.64843 1.20806 1.34778 1.05323 1.23120 0.93062 0.99516 0.92719 1.22485 0.98683 0.98048 0.97089 1.22379 1.00063 0.99027 0.95007 1.22921 0.99137 0.89648 0.97753 0.92467 0.96121 0.96404 0.92482 0.92244 0.92940 0.93233 0.74260 0.81713 0.80763 0.91016 0.90365 0.92399 0.92043 0.89565 0.92370 0.89952 0.91180 0.92271 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 2 C 0.01 0.36 5.47 84.65 0.46 0.83 16 3 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.53 -31.15 9.66 25.60 0.25 -30.90 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 10 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 11 C 0.15 5.01 5.69 86.38 0.49 5.51 16 12 N -0.71 -20.45 5.62 -345.10 -1.94 -22.39 16 13 C 0.43 11.59 7.46 133.03 0.99 12.58 16 14 N -0.58 -17.38 9.54 -184.13 -1.76 -19.13 16 15 C 0.21 5.13 7.27 84.67 0.62 5.74 16 16 Cl -0.04 -1.01 29.10 -2.72 -0.08 -1.09 16 17 C -0.21 -3.73 9.87 22.40 0.22 -3.51 16 18 C -0.01 -0.13 9.16 22.43 0.21 0.08 16 19 C -0.20 -3.93 4.33 -19.63 -0.09 -4.02 16 20 C 0.10 1.62 4.47 85.56 0.38 2.00 16 21 N -0.53 -9.35 5.39 -887.58 -4.78 -14.13 16 22 C 0.04 0.68 5.23 86.65 0.45 1.13 16 23 C -0.12 -1.75 7.06 31.80 0.22 -1.52 16 24 C -0.13 -1.56 6.93 31.47 0.22 -1.35 16 25 C 0.03 0.47 6.70 86.45 0.58 1.05 16 26 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 28 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.42 11.06 6.69 -92.71 -0.62 10.44 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.07 0.81 7.70 -2.39 -0.02 0.79 16 37 H 0.08 1.35 7.12 -2.38 -0.02 1.33 16 38 H 0.06 1.16 7.90 -2.39 -0.02 1.14 16 39 H 0.06 0.72 7.84 -2.39 -0.02 0.70 16 40 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.67 7.57 -2.39 -0.02 0.65 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.82 375.72 -0.78 -70.61 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.30 Total: 15.27 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 5.29 Total: -16.37 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -8.18 Total: -115.76 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -69.82 -0.78 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.187 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds