Wall clock time and date at job start Tue Mar 31 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48504 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47129 * 299.99570 * 3 2 1 6 6 H 1.48500 * 109.47521 * 59.99836 * 3 2 1 7 7 C 1.37875 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47384 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47013 * 179.97438 * 11 10 9 13 13 C 1.38402 * 119.99746 * 179.97438 * 12 11 10 14 14 N 1.32500 * 119.21154 * 0.25316 * 13 12 11 15 15 C 1.32377 * 120.71685 * 180.31627 * 14 13 12 16 16 Cl 1.73599 * 120.42248 * 179.71621 * 15 14 13 17 17 C 1.38833 * 119.15799 * 359.43545 * 15 14 13 18 18 C 1.38480 * 118.55298 * 0.28156 * 17 15 14 19 19 C 1.50696 * 120.39561 * 180.02562 * 18 17 15 20 20 C 1.52996 * 109.47395 * 34.99736 * 19 18 17 21 21 C 1.52996 * 109.47480 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.46975 * 59.99727 * 21 20 19 23 23 C 1.53002 * 109.47539 * 300.00517 * 22 21 20 24 24 C 1.52995 * 109.47191 * 59.99426 * 23 22 21 25 25 N 1.32338 * 119.21162 * 359.97438 * 18 17 15 26 26 H 0.97003 * 120.00137 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47320 * 59.99974 * 9 7 2 28 28 H 1.09001 * 109.47199 * 300.00013 * 9 7 2 29 29 H 1.08995 * 109.47237 * 59.99530 * 10 9 7 30 30 H 1.09001 * 109.46646 * 299.99960 * 10 9 7 31 31 H 1.08995 * 109.47452 * 59.99497 * 11 10 9 32 32 H 1.08995 * 109.46822 * 299.99165 * 11 10 9 33 33 H 0.97003 * 119.99861 * 359.97438 * 12 11 10 34 34 H 1.08005 * 120.72400 * 180.25730 * 17 15 14 35 35 H 1.09004 * 109.46994 * 154.99917 * 19 18 17 36 36 H 1.09002 * 109.46845 * 300.00457 * 20 19 18 37 37 H 1.08998 * 109.47091 * 59.99674 * 20 19 18 38 38 H 1.09002 * 109.47302 * 299.99990 * 21 20 19 39 39 H 1.08998 * 109.47721 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47573 * 179.97438 * 22 21 20 41 41 H 1.09004 * 109.47041 * 60.00535 * 22 21 20 42 42 H 1.09002 * 109.46617 * 299.99662 * 23 22 21 43 43 H 1.08998 * 109.47390 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47065 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46644 * 60.00437 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0037 13 6 1.9708 -7.4055 0.0047 14 7 0.6649 -7.6296 0.0003 15 6 0.1910 -8.8656 0.0074 16 17 -1.5215 -9.1504 0.0089 17 6 1.0808 -9.9313 0.0077 18 6 2.4387 -9.6597 0.0065 19 6 3.4413 -10.7848 0.0062 20 6 2.8978 -11.9521 -0.8201 21 6 3.9154 -13.0946 -0.8198 22 6 4.1614 -13.5581 0.6173 23 6 4.7049 -12.3908 1.4438 24 6 3.6874 -11.2483 1.4434 25 7 2.8455 -8.4004 0.0046 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8879 28 1 0.6247 -2.5562 0.8920 29 1 2.8719 -3.6035 0.8926 30 1 2.8718 -3.6051 -0.8873 31 1 0.8538 -5.0454 -0.8868 32 1 0.8534 -5.0443 0.8931 33 1 3.3859 -5.9233 0.0032 34 1 0.7218 -10.9499 0.0093 35 1 4.3780 -10.4366 -0.4290 36 1 1.9610 -12.3002 -0.3848 37 1 2.7220 -11.6218 -1.8438 38 1 4.8523 -12.7468 -1.2549 39 1 3.5280 -13.9264 -1.4081 40 1 4.8860 -14.3723 0.6176 41 1 3.2245 -13.9060 1.0524 42 1 5.6419 -12.0429 1.0087 43 1 4.8806 -12.7211 2.4675 44 1 4.0744 -10.4169 2.0325 45 1 2.7504 -11.5962 1.8784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157643372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:12 Heat of formation + Delta-G solvation = 5.178828 kcal Electronic energy + Delta-G solvation = -24027.801442 eV Core-core repulsion = 20490.507584 eV Total energy + Delta-G solvation = -3537.293858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24654 -38.87326 -37.07054 -36.34489 -34.09974 -33.63378 -32.25731 -31.15715 -30.89251 -29.51939 -26.67033 -24.80353 -23.86749 -22.94467 -22.83353 -21.38499 -20.48965 -20.00797 -18.01465 -17.50543 -16.31285 -16.03948 -15.73465 -15.57983 -14.97619 -14.62969 -14.56586 -14.50470 -14.37041 -14.23083 -14.06189 -13.02093 -12.81043 -12.63482 -12.56858 -12.32045 -11.89281 -11.82052 -11.74739 -11.51566 -11.42324 -11.07134 -10.97305 -10.83303 -10.75722 -10.70782 -10.59749 -10.54190 -10.20393 -10.16675 -9.75498 -9.51065 -9.26152 -9.12801 -8.38285 -8.04307 -6.02683 -4.05595 0.89728 1.05207 1.51554 2.95069 3.29708 3.37267 3.41108 3.69211 3.84818 4.31159 4.40300 4.43049 4.47236 4.60792 4.78910 4.87703 4.89807 5.05136 5.07479 5.11226 5.16747 5.27586 5.31780 5.33268 5.46093 5.65590 5.66979 5.73771 5.75326 5.76017 5.77696 5.84639 5.94899 6.02412 6.08029 6.13649 6.57640 6.58178 6.82940 6.92417 7.06380 7.51632 7.62591 7.74502 7.96035 8.26904 8.37290 9.01107 9.58657 11.08592 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002234 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.788138 B =12531.790002 C =13790.314398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.131 3.869 12 N -0.684 5.684 13 C 0.589 3.411 14 N -0.565 5.565 15 C 0.272 3.728 16 Cl -0.022 7.022 17 C -0.285 4.285 18 C 0.241 3.759 19 C -0.036 4.036 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.108 4.108 25 N -0.570 5.570 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.415 0.585 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 -29.986 0.493 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.160 4.160 11 C 0.008 3.992 12 N -0.318 5.318 13 C 0.232 3.768 14 N -0.291 5.291 15 C 0.096 3.904 16 Cl 0.007 6.993 17 C -0.312 4.312 18 C 0.091 3.909 19 C -0.056 4.056 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.146 4.146 25 N -0.293 5.293 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.253 0.747 34 H 0.168 0.832 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.554 -28.685 0.482 29.221 hybrid contribution 0.118 0.370 -0.005 0.388 sum 5.672 -28.315 0.477 28.881 Atomic orbital electron populations 1.69974 1.06042 1.26583 1.50637 1.25032 0.94872 0.99329 0.95287 0.86524 0.80065 0.83729 0.77597 1.19751 1.20998 1.20992 1.21233 0.93047 0.90889 1.50810 0.92578 1.19018 0.93780 0.90730 0.97703 1.21916 0.99889 0.93131 1.01060 1.21716 0.91303 0.84009 1.02205 1.44667 1.10488 1.00339 1.76353 1.19147 0.83253 0.87233 0.87187 1.67191 1.15037 1.23158 1.23715 1.21644 0.87607 0.89342 0.91791 1.98425 1.09902 1.95034 1.95945 1.21995 0.93504 1.00389 1.15325 1.21282 0.91917 0.91074 0.86606 1.20161 0.96987 0.90822 0.97586 1.21661 0.99087 0.94447 1.00005 1.21523 0.99365 0.97785 0.96896 1.21569 1.01212 0.97681 0.95459 1.21525 0.98546 0.95219 1.00233 1.21532 0.99990 0.98471 0.94588 1.67766 1.38541 0.99518 1.23523 0.92980 0.96208 0.96223 0.92615 0.92622 0.91560 0.91567 0.74718 0.83247 0.88599 0.91101 0.91420 0.91744 0.91655 0.91990 0.91853 0.91688 0.91686 0.91361 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.64 4.97 -27.89 -0.14 0.51 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.13 2.30 5.65 -4.04 -0.02 2.28 16 12 N -0.68 -10.69 5.70 -62.31 -0.36 -11.04 16 13 C 0.59 9.33 8.42 -322.83 -2.72 6.61 16 14 N -0.56 -9.19 9.58 -11.02 -0.11 -9.29 16 15 C 0.27 3.70 7.33 -17.10 -0.13 3.58 16 16 Cl -0.02 -0.26 29.15 -51.86 -1.51 -1.77 16 17 C -0.28 -3.16 9.06 -39.27 -0.36 -3.52 16 18 C 0.24 2.77 5.82 -82.29 -0.48 2.29 16 19 C -0.04 -0.30 2.54 -91.78 -0.23 -0.53 16 20 C -0.11 -0.74 4.65 -26.74 -0.12 -0.86 16 21 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 22 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 23 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 24 C -0.11 -0.79 5.18 -26.73 -0.14 -0.93 16 25 N -0.57 -8.06 10.39 -10.18 -0.11 -8.17 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.42 5.80 8.59 -40.82 -0.35 5.45 16 34 H 0.15 1.24 6.43 -52.48 -0.34 0.90 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.42 6.57 -51.93 -0.34 0.07 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -30.73 378.12 -13.36 -44.09 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.33 Total: -1.06 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -5.36 Total: -8.95 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.17 Total: -54.59 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.51 Total: -1.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.73 -13.36 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157643372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.270 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds