Wall clock time and date at job start Tue Mar 31 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48504 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47129 * 299.99570 * 3 2 1 6 6 H 1.48500 * 109.47521 * 59.99836 * 3 2 1 7 7 C 1.37875 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47384 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47013 * 179.97438 * 11 10 9 13 13 C 1.38402 * 119.99746 * 179.97438 * 12 11 10 14 14 N 1.32500 * 119.21154 * 0.25316 * 13 12 11 15 15 C 1.32377 * 120.71685 * 180.31627 * 14 13 12 16 16 Cl 1.73599 * 120.42248 * 179.71621 * 15 14 13 17 17 C 1.38833 * 119.15799 * 359.43545 * 15 14 13 18 18 C 1.38480 * 118.55298 * 0.28156 * 17 15 14 19 19 C 1.50696 * 120.39561 * 180.02562 * 18 17 15 20 20 C 1.52996 * 109.47395 * 34.99736 * 19 18 17 21 21 C 1.52996 * 109.47480 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.46975 * 59.99727 * 21 20 19 23 23 C 1.53002 * 109.47539 * 300.00517 * 22 21 20 24 24 C 1.52995 * 109.47191 * 59.99426 * 23 22 21 25 25 N 1.32338 * 119.21162 * 359.97438 * 18 17 15 26 26 H 0.97003 * 120.00137 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47320 * 59.99974 * 9 7 2 28 28 H 1.09001 * 109.47199 * 300.00013 * 9 7 2 29 29 H 1.08995 * 109.47237 * 59.99530 * 10 9 7 30 30 H 1.09001 * 109.46646 * 299.99960 * 10 9 7 31 31 H 1.08995 * 109.47452 * 59.99497 * 11 10 9 32 32 H 1.08995 * 109.46822 * 299.99165 * 11 10 9 33 33 H 0.97003 * 119.99861 * 359.97438 * 12 11 10 34 34 H 1.08005 * 120.72400 * 180.25730 * 17 15 14 35 35 H 1.09004 * 109.46994 * 154.99917 * 19 18 17 36 36 H 1.09002 * 109.46845 * 300.00457 * 20 19 18 37 37 H 1.08998 * 109.47091 * 59.99674 * 20 19 18 38 38 H 1.09002 * 109.47302 * 299.99990 * 21 20 19 39 39 H 1.08998 * 109.47721 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47573 * 179.97438 * 22 21 20 41 41 H 1.09004 * 109.47041 * 60.00535 * 22 21 20 42 42 H 1.09002 * 109.46617 * 299.99662 * 23 22 21 43 43 H 1.08998 * 109.47390 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47065 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46644 * 60.00437 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0037 13 6 1.9708 -7.4055 0.0047 14 7 0.6649 -7.6296 0.0003 15 6 0.1910 -8.8656 0.0074 16 17 -1.5215 -9.1504 0.0089 17 6 1.0808 -9.9313 0.0077 18 6 2.4387 -9.6597 0.0065 19 6 3.4413 -10.7848 0.0062 20 6 2.8978 -11.9521 -0.8201 21 6 3.9154 -13.0946 -0.8198 22 6 4.1614 -13.5581 0.6173 23 6 4.7049 -12.3908 1.4438 24 6 3.6874 -11.2483 1.4434 25 7 2.8455 -8.4004 0.0046 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8879 28 1 0.6247 -2.5562 0.8920 29 1 2.8719 -3.6035 0.8926 30 1 2.8718 -3.6051 -0.8873 31 1 0.8538 -5.0454 -0.8868 32 1 0.8534 -5.0443 0.8931 33 1 3.3859 -5.9233 0.0032 34 1 0.7218 -10.9499 0.0093 35 1 4.3780 -10.4366 -0.4290 36 1 1.9610 -12.3002 -0.3848 37 1 2.7220 -11.6218 -1.8438 38 1 4.8523 -12.7468 -1.2549 39 1 3.5280 -13.9264 -1.4081 40 1 4.8860 -14.3723 0.6176 41 1 3.2245 -13.9060 1.0524 42 1 5.6419 -12.0429 1.0087 43 1 4.8806 -12.7211 2.4675 44 1 4.0744 -10.4169 2.0325 45 1 2.7504 -11.5962 1.8784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157643372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:12 Heat of formation + Delta-G solvation = -9.129435 kcal Electronic energy + Delta-G solvation = -24028.421894 eV Core-core repulsion = 20490.507584 eV Total energy + Delta-G solvation = -3537.914311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27108 -39.52091 -38.14211 -37.58046 -35.61720 -34.91046 -33.75417 -32.21813 -31.61472 -30.50260 -28.43132 -25.83746 -25.12954 -24.30208 -23.38060 -22.33075 -22.09710 -20.63015 -19.12867 -18.64825 -18.34013 -16.97886 -16.86234 -16.52192 -16.31712 -15.95678 -15.91095 -15.70234 -15.03032 -14.99334 -14.77065 -14.31584 -13.99998 -13.76642 -13.69411 -13.37324 -13.18750 -13.05810 -12.79470 -12.68337 -12.54427 -12.36022 -12.22090 -12.06190 -11.84994 -11.79944 -11.51864 -11.50779 -11.32493 -11.21245 -11.16653 -11.13412 -10.84226 -10.57262 -10.33076 -9.21219 -8.20997 -6.32162 -0.14529 0.03171 0.50764 1.40390 1.40443 1.53762 1.77587 2.40776 2.62974 2.95729 3.12664 3.48638 3.63098 3.82791 3.88883 4.09297 4.12997 4.18125 4.18957 4.29631 4.37344 4.42966 4.52902 4.57464 4.64188 4.65851 4.75754 4.90345 4.92001 5.00346 5.13019 5.16694 5.19570 5.23631 5.29957 5.30797 5.43561 5.46603 5.48780 5.60282 5.68612 5.68889 5.82304 5.86715 6.21284 6.38251 6.84747 7.15860 7.37161 8.91174 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002234 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.788138 B =12531.790002 C =13790.314398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.103 4.103 11 C 0.153 3.847 12 N -0.685 5.685 13 C 0.574 3.426 14 N -0.598 5.598 15 C 0.253 3.747 16 Cl -0.011 7.011 17 C -0.265 4.265 18 C 0.237 3.763 19 C -0.031 4.031 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.104 4.104 25 N -0.578 5.578 26 H 0.263 0.737 27 H -0.006 1.006 28 H -0.006 1.006 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.422 0.578 34 H 0.182 0.818 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -31.865 0.485 32.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.141 4.141 11 C 0.029 3.971 12 N -0.322 5.322 13 C 0.217 3.783 14 N -0.325 5.325 15 C 0.079 3.921 16 Cl 0.017 6.983 17 C -0.292 4.292 18 C 0.088 3.912 19 C -0.051 4.051 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.143 4.143 25 N -0.301 5.301 26 H 0.072 0.928 27 H 0.013 0.987 28 H 0.013 0.987 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.261 0.739 34 H 0.199 0.801 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.977 -30.622 0.473 31.411 hybrid contribution -0.364 0.818 0.003 0.895 sum 6.613 -29.804 0.476 30.533 Atomic orbital electron populations 1.70111 1.07829 1.27736 1.51640 1.26010 0.95793 1.03494 0.94798 0.85371 0.79117 0.78679 0.77695 1.18414 1.20482 1.20469 1.21687 0.93662 0.92067 1.50462 0.91800 1.18905 0.94285 0.92619 0.95252 1.21611 0.98602 0.92042 1.01886 1.21209 0.90999 0.83915 1.01002 1.44337 1.10300 1.00029 1.77507 1.19226 0.83553 0.87434 0.88099 1.67138 1.15517 1.24880 1.24958 1.21995 0.88510 0.89298 0.92297 1.98423 1.09106 1.94860 1.95901 1.22342 0.92919 1.01239 1.12700 1.21940 0.93011 0.90946 0.85329 1.20260 0.95918 0.90307 0.98592 1.21671 0.99868 0.93963 0.99416 1.21515 0.98945 0.97568 0.97292 1.21569 1.01681 0.97461 0.95022 1.21511 0.97950 0.94886 1.00894 1.21515 1.00676 0.98545 0.93541 1.67817 1.38359 1.00240 1.23718 0.92775 0.98711 0.98723 0.91692 0.91703 0.92838 0.92839 0.73892 0.80051 0.89111 0.90055 0.91742 0.91921 0.90519 0.91100 0.91357 0.91839 0.91050 0.92934 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.63 9.11 25.60 0.23 -30.39 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.10 -4.14 5.27 30.59 0.16 -3.98 16 11 C 0.15 5.55 5.65 86.38 0.49 6.04 16 12 N -0.69 -21.62 5.70 -351.05 -2.00 -23.62 16 13 C 0.57 18.29 8.42 261.49 2.20 20.49 16 14 N -0.60 -19.62 9.58 -188.79 -1.81 -21.43 16 15 C 0.25 6.72 7.33 84.75 0.62 7.34 16 16 Cl -0.01 -0.27 29.15 -2.72 -0.08 -0.34 16 17 C -0.27 -5.45 9.06 22.47 0.20 -5.24 16 18 C 0.24 5.14 5.82 42.54 0.25 5.39 16 19 C -0.03 -0.46 2.54 -11.54 -0.03 -0.49 16 20 C -0.11 -1.15 4.65 30.59 0.14 -1.01 16 21 C -0.12 -0.91 5.92 30.59 0.18 -0.73 16 22 C -0.12 -0.88 5.92 30.59 0.18 -0.70 16 23 C -0.11 -1.09 5.92 30.59 0.18 -0.91 16 24 C -0.10 -1.36 5.18 30.59 0.16 -1.20 16 25 N -0.58 -16.08 10.39 -186.11 -1.93 -18.02 16 26 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 27 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.42 11.74 8.59 -92.71 -0.80 10.95 16 34 H 0.18 2.44 6.43 -2.91 -0.02 2.42 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 0.68 6.57 -2.39 -0.02 0.66 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.98 378.12 2.26 -64.72 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.19 Total: 12.78 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.58 Total: -3.55 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -5.46 Total: -120.00 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.34 kcal Total: -66.98 2.26 -64.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157643372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.594 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds