Wall clock time and date at job start Tue Mar 31 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36940 * 120.00244 * 2 1 4 4 H 1.07998 * 119.99589 * 202.56024 * 3 2 1 5 5 C 1.38803 * 119.99816 * 22.55688 * 3 2 1 6 6 N 1.31616 * 120.00189 * 10.32400 * 5 3 2 7 7 Si 1.86804 * 119.99847 * 190.31806 * 5 3 2 8 8 H 1.48506 * 109.46884 * 94.98789 * 7 5 3 9 9 H 1.48498 * 109.47071 * 214.98733 * 7 5 3 10 10 H 1.48502 * 109.47005 * 334.98967 * 7 5 3 11 11 C 1.46506 * 119.99689 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47196 * 264.66254 * 11 2 1 13 13 H 1.08998 * 109.69890 * 297.88492 * 12 11 2 14 14 C 1.53196 * 109.58522 * 58.23576 * 12 11 2 15 15 C 1.53035 * 109.30996 * 174.42129 * 14 12 11 16 16 C 1.53038 * 109.54213 * 298.63426 * 15 14 12 17 17 C 1.53195 * 109.31035 * 61.36857 * 16 15 14 18 18 N 1.46919 * 109.58591 * 177.52506 * 12 11 2 19 19 C 1.34776 * 120.63523 * 6.60669 * 18 12 11 20 20 O 1.21288 * 119.99427 * 5.29865 * 19 18 12 21 21 C 1.50693 * 120.00541 * 185.30376 * 19 18 12 22 22 C 1.50701 * 109.47386 * 184.44942 * 21 19 18 23 23 C 1.33638 * 126.03596 * 85.78796 * 22 21 19 24 24 N 1.31782 * 114.49995 * 180.02562 * 23 22 21 25 25 C 1.29037 * 117.12332 * 359.97438 * 24 23 22 26 26 S 1.70976 * 110.16359 * 359.72932 * 25 24 23 27 27 H 1.09000 * 109.47067 * 275.22320 * 1 2 3 28 28 H 1.09001 * 109.46454 * 35.21861 * 1 2 3 29 29 H 1.08996 * 109.47261 * 155.22098 * 1 2 3 30 30 H 0.97004 * 120.00247 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46849 * 144.66323 * 11 2 1 32 32 H 1.09001 * 109.47361 * 24.66516 * 11 2 1 33 33 H 1.09002 * 109.49826 * 54.47228 * 14 12 11 34 34 H 1.08996 * 109.49571 * 294.37611 * 14 12 11 35 35 H 1.09002 * 109.45747 * 178.61212 * 15 14 12 36 36 H 1.09002 * 109.45205 * 58.65453 * 15 14 12 37 37 H 1.08999 * 109.49758 * 181.32038 * 16 15 14 38 38 H 1.08996 * 109.49493 * 301.41574 * 16 15 14 39 39 H 1.08996 * 109.58762 * 65.15093 * 17 16 15 40 40 H 1.08997 * 109.58402 * 185.58349 * 17 16 15 41 41 H 1.09004 * 109.46670 * 304.44632 * 21 19 18 42 42 H 1.08997 * 109.47382 * 64.44269 * 21 19 18 43 43 H 1.07997 * 122.75416 * 359.97438 * 23 22 21 44 44 H 1.07999 * 124.91270 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1678 1.2216 -0.3588 5 6 1.5354 2.3420 0.4611 6 7 0.3780 2.2689 1.0835 7 14 2.3515 4.0017 0.1985 8 1 1.8108 4.6297 -1.0338 9 1 2.0743 4.8795 1.3639 10 1 3.8179 3.8154 0.0568 11 6 2.1975 -1.2688 0.0006 12 6 2.5687 -1.6428 1.4370 13 1 3.2266 -0.8817 1.8565 14 6 1.2974 -1.7468 2.2854 15 6 1.6613 -2.2555 3.6821 16 6 2.2846 -3.6490 3.5731 17 6 3.5671 -3.5665 2.7393 18 7 3.2514 -2.9437 1.4465 19 6 3.5818 -3.5544 0.2913 20 8 3.4033 -2.9883 -0.7664 21 6 4.1727 -4.9404 0.3138 22 6 4.5512 -5.3480 -1.0868 23 6 5.7044 -5.0699 -1.7020 24 7 5.7954 -5.5383 -2.9304 25 6 4.7831 -6.1966 -3.3854 26 16 3.5544 -6.2821 -2.1996 27 1 -0.3633 0.0936 1.0234 28 1 -0.3632 0.8396 -0.5927 29 1 -0.3633 -0.9330 -0.4307 30 1 -0.0512 3.0768 1.4061 31 1 3.1051 -1.1646 -0.5938 32 1 1.5704 -2.0506 -0.4279 33 1 0.6019 -2.4418 1.8149 34 1 0.8323 -0.7644 2.3657 35 1 0.7618 -2.3070 4.2956 36 1 2.3759 -1.5730 4.1422 37 1 2.5220 -4.0203 4.5700 38 1 1.5798 -4.3260 3.0905 39 1 4.3065 -2.9623 3.2650 40 1 3.9614 -4.5693 2.5752 41 1 5.0604 -4.9466 0.9464 42 1 3.4389 -5.6419 0.7107 43 1 6.4967 -4.5066 -1.2315 44 1 4.7226 -6.6339 -4.3711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158102040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:06 Heat of formation + Delta-G solvation = 51.269600 kcal Electronic energy + Delta-G solvation = -26092.771501 eV Core-core repulsion = 22559.519995 eV Total energy + Delta-G solvation = -3533.251506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38536 -39.48620 -37.16021 -35.47682 -33.22311 -32.44045 -31.69474 -30.00387 -27.98272 -26.47334 -25.65593 -24.75955 -24.15169 -22.32469 -20.93862 -20.38349 -20.08457 -18.74795 -18.05780 -17.00788 -16.23066 -16.07041 -15.29333 -15.19961 -14.65616 -14.34582 -14.22558 -14.01826 -13.92796 -13.52688 -13.45499 -13.23917 -13.06731 -12.69127 -12.60999 -12.36906 -12.14987 -11.53802 -11.29185 -11.06106 -10.93849 -10.85195 -10.62332 -10.58532 -10.40217 -10.21971 -10.04680 -9.81410 -9.73244 -9.69920 -9.37960 -9.05761 -8.75175 -8.40061 -8.17076 -6.63150 -5.63318 -3.08381 0.63029 1.29350 1.67497 2.76840 2.83878 3.27133 3.43347 3.49796 3.51509 4.25125 4.56091 4.59017 4.66550 4.86462 4.88942 5.00455 5.14922 5.17357 5.22774 5.45910 5.51993 5.56830 5.57878 5.63233 5.78077 5.95746 5.99780 6.06369 6.07881 6.22150 6.24376 6.52948 6.57177 6.70846 6.87112 7.01247 7.05904 7.39590 7.50433 7.63139 7.71207 7.83990 7.90981 8.42259 8.55964 9.35190 9.99676 10.48743 11.40883 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.003907 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.678073 B = 7164.427020 C = 8335.425182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.602 5.602 3 C -0.245 4.245 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.912 5.912 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.165 3.835 12 C 0.125 3.875 13 H 0.070 0.930 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.105 3.895 18 N -0.605 5.605 19 C 0.509 3.491 20 O -0.514 6.514 21 C -0.066 4.066 22 C -0.192 4.192 23 C 0.042 3.958 24 N -0.470 5.470 25 C 0.012 3.988 26 S 0.131 5.869 27 H 0.030 0.970 28 H 0.041 0.959 29 H -0.008 1.008 30 H 0.250 0.750 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.173 0.827 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -20.375 2.820 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.375 4.375 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.558 5.558 7 Si 0.732 3.268 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.038 3.962 12 C 0.020 3.980 13 H 0.088 0.912 14 C -0.159 4.159 15 C -0.158 4.158 16 C -0.171 4.171 17 C -0.019 4.019 18 N -0.339 5.339 19 C 0.294 3.706 20 O -0.390 6.390 21 C -0.109 4.109 22 C -0.314 4.314 23 C -0.109 4.109 24 N -0.183 5.183 25 C -0.285 4.285 26 S 0.383 5.617 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.011 0.989 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.190 0.810 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.174 -20.316 1.920 21.052 hybrid contribution 0.992 1.484 0.546 1.867 sum 6.167 -18.832 2.466 19.969 Atomic orbital electron populations 1.20843 0.82962 0.95120 0.99186 1.44238 1.01834 1.01149 1.85287 1.19250 0.97912 0.85657 1.34680 0.91596 1.24982 0.97641 0.98273 0.98809 1.70051 1.17422 1.26791 1.41509 0.86274 0.78909 0.84456 0.77168 1.21668 1.21881 1.20562 1.21480 0.96929 0.87142 0.90693 1.22519 0.92463 0.80993 1.01992 0.91155 1.21925 0.97407 1.03073 0.93525 1.21538 1.00371 0.95509 0.98343 1.21909 0.97159 0.98565 0.99463 1.21739 0.97361 0.97941 0.84826 1.48452 1.58646 1.22039 1.04799 1.20286 0.79057 0.86977 0.84232 1.90817 1.52966 1.64588 1.30584 1.20157 1.03004 0.96047 0.91644 1.25319 0.97858 1.07021 1.01157 1.21646 0.98010 1.01410 0.89845 1.66294 1.28022 1.10938 1.13044 1.28300 0.92478 1.03161 1.04599 1.83941 1.21763 1.48794 1.07192 0.95167 0.94074 0.98911 0.93976 0.91205 0.93867 0.93031 0.88471 0.92263 0.92057 0.91340 0.91817 0.91375 0.90448 0.87209 0.87893 0.81034 0.78646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 8.11 59.85 0.49 4.64 16 2 N -0.60 -15.65 2.52 -181.11 -0.46 -16.11 16 3 C -0.24 -6.92 9.67 -15.06 -0.15 -7.06 16 4 H 0.07 1.88 7.85 -52.49 -0.41 1.46 16 5 C 0.00 0.01 5.16 -17.44 -0.09 -0.08 16 6 N -0.91 -26.48 10.54 55.49 0.58 -25.90 16 7 Si 0.90 22.37 29.57 -169.99 -5.03 17.34 16 8 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.16 3.72 3.65 -4.04 -0.01 3.71 16 12 C 0.12 2.36 3.19 -67.60 -0.22 2.14 16 13 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 14 C -0.12 -2.16 4.61 -26.61 -0.12 -2.28 16 15 C -0.12 -1.64 5.88 -26.69 -0.16 -1.80 16 16 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 17 C 0.10 1.09 6.33 -3.71 -0.02 1.07 16 18 N -0.60 -8.88 2.97 -165.22 -0.49 -9.37 16 19 C 0.51 7.62 7.52 -10.99 -0.08 7.54 16 20 O -0.51 -9.97 11.59 5.55 0.06 -9.91 16 21 C -0.07 -0.68 4.64 -29.04 -0.13 -0.81 16 22 C -0.19 -2.27 5.10 -35.92 -0.18 -2.45 16 23 C 0.04 0.53 11.25 -19.18 -0.22 0.32 16 24 N -0.47 -6.27 10.54 -15.75 -0.17 -6.44 16 25 C 0.01 0.13 12.23 51.59 0.63 0.76 16 26 S 0.13 1.38 23.22 -107.50 -2.50 -1.11 16 27 H 0.03 0.80 6.12 -51.93 -0.32 0.48 16 28 H 0.04 1.13 7.24 -51.93 -0.38 0.75 16 29 H -0.01 -0.18 7.79 -51.93 -0.40 -0.58 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.07 1.73 6.24 -51.93 -0.32 1.40 16 32 H 0.04 0.99 6.83 -51.93 -0.35 0.64 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 2.12 6.26 -51.93 -0.33 1.80 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.56 5.91 -51.93 -0.31 0.25 16 41 H 0.11 0.83 7.48 -51.93 -0.39 0.44 16 42 H 0.10 0.84 8.06 -51.93 -0.42 0.42 16 43 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 44 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -33.20 356.89 -9.61 -42.80 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.57 Total: -0.83 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.43 Total: 4.14 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.53 Total: -57.82 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.06 Total: -9.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.50 Total: -1.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.20 -9.61 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158102040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.073 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds