Wall clock time and date at job start Tue Mar 31 2020 13:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00150 * 2 1 4 4 C 1.50700 * 109.47492 * 293.95470 * 3 2 1 5 5 C 1.38863 * 120.33941 * 270.02518 * 4 3 2 6 6 C 1.38320 * 118.50494 * 179.72346 * 5 4 3 7 7 C 1.39119 * 119.09715 * 0.47019 * 6 5 4 8 8 N 1.39150 * 119.70431 * 179.79669 * 7 6 5 9 9 C 1.38382 * 120.00207 * 353.95285 * 8 7 6 10 10 C 1.38972 * 119.99908 * 300.27376 * 9 8 7 11 11 H 1.08001 * 120.00017 * 152.26305 * 10 9 8 12 12 C 1.40841 * 120.00073 * 332.26197 * 10 9 8 13 13 N 1.30330 * 120.00252 * 2.89724 * 12 10 9 14 14 Si 1.86803 * 120.00062 * 182.90226 * 12 10 9 15 15 H 1.48496 * 109.47292 * 90.00060 * 14 12 10 16 16 H 1.48501 * 109.47336 * 210.00067 * 14 12 10 17 17 H 1.48504 * 109.47120 * 330.00018 * 14 12 10 18 18 C 1.41140 * 120.00230 * 120.27257 * 9 8 7 19 19 C 1.43200 * 120.00122 * 174.75574 * 18 9 8 20 20 N 9.92226 * 96.31383 * 291.99252 * 2 1 3 21 21 C 1.43207 * 119.99818 * 354.48389 * 18 9 8 22 22 N 8.04295 * 70.87941 * 286.13416 * 2 1 3 23 23 N 1.32393 * 120.58896 * 359.52088 * 7 6 5 24 24 C 1.31951 * 121.63184 * 0.25090 * 23 7 6 25 25 C 1.46905 * 110.99979 * 123.95884 * 2 1 3 26 26 C 1.52998 * 117.50015 * 124.67026 * 25 2 1 27 27 C 1.52993 * 117.50224 * 56.04134 * 25 2 1 28 28 H 1.08999 * 109.47470 * 59.99598 * 1 2 3 29 29 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47020 * 299.99594 * 1 2 3 31 31 H 1.09008 * 109.47210 * 173.95731 * 3 2 1 32 32 H 1.08997 * 109.47688 * 53.95729 * 3 2 1 33 33 H 1.08004 * 120.75128 * 359.97438 * 5 4 3 34 34 H 1.08004 * 120.45940 * 180.24900 * 6 5 4 35 35 H 0.96998 * 119.99821 * 173.95759 * 8 7 6 36 36 H 0.97001 * 120.00435 * 185.00152 * 13 12 10 37 37 H 1.07990 * 119.57635 * 180.02562 * 24 23 7 38 38 H 1.09001 * 115.54373 * 270.37328 * 25 2 1 39 39 H 1.08997 * 117.50106 * 359.97438 * 26 25 2 40 40 H 1.08992 * 117.50069 * 145.01937 * 26 25 2 41 41 H 1.08999 * 117.50058 * 214.98308 * 27 25 2 42 42 H 1.09000 * 117.49608 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 2.4923 1.9687 -2.3895 6 6 2.1230 2.5983 -3.5644 7 6 0.9186 3.2932 -3.6099 8 7 0.5367 3.9348 -4.7841 9 6 1.4070 3.9869 -5.8588 10 6 2.6482 4.5960 -5.7187 11 1 3.4778 4.2787 -6.3331 12 6 2.8243 5.6271 -4.7756 13 7 1.8390 5.9716 -3.9951 14 14 4.4699 6.5011 -4.6435 15 1 4.4833 7.6721 -5.5565 16 1 4.6758 6.9604 -3.2464 17 1 5.5591 5.5655 -5.0225 18 6 1.0341 3.4214 -7.0970 19 6 1.8851 3.5730 -8.2387 20 7 2.5602 3.6932 -9.1444 21 6 -0.1926 2.6911 -7.2102 22 7 -1.1656 2.1117 -7.2999 23 7 0.1301 3.3449 -2.5477 24 6 0.4545 2.7501 -1.4154 25 6 1.9954 -0.7661 1.1376 26 6 2.9693 -1.9057 0.8317 27 6 1.5409 -2.2199 1.2812 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0798 1.3443 0.1082 32 1 1.5612 1.9273 0.8309 33 1 3.4231 1.4249 -2.3235 34 1 2.7625 2.5542 -4.4336 35 1 -0.3396 4.3455 -4.8494 36 1 1.9363 6.7286 -3.3965 37 1 -0.2139 2.8133 -0.5696 38 1 2.1579 -0.1968 2.0528 39 1 3.2191 -2.0874 -0.2136 40 1 3.7728 -2.0864 1.5456 41 1 1.4047 -2.6072 2.2909 42 1 0.8509 -2.6078 0.5319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:07 Heat of formation + Delta-G solvation = 120.887856 kcal Electronic energy + Delta-G solvation = -26022.302184 eV Core-core repulsion = 22388.918352 eV Total energy + Delta-G solvation = -3633.383832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25433 -39.46058 -38.65370 -37.02276 -36.54566 -35.67982 -34.81712 -33.17982 -32.31933 -30.47774 -28.79585 -27.92041 -25.35464 -24.32462 -23.31230 -23.06068 -22.14328 -21.18869 -20.63243 -19.00801 -18.61239 -17.76336 -17.43109 -17.28364 -16.48723 -16.22478 -15.66343 -15.26320 -15.23606 -14.97970 -14.62191 -14.55494 -14.33463 -14.28805 -13.86991 -13.73492 -13.65935 -13.46987 -13.42288 -13.33203 -13.02065 -12.82129 -12.72076 -12.66677 -12.49627 -12.40478 -12.09626 -12.05338 -11.49705 -11.34351 -11.29755 -10.98948 -10.47363 -10.18942 -9.71591 -9.21295 -9.12182 -8.24427 -7.14797 0.33353 0.65394 0.90234 1.38508 1.53286 1.54216 2.03334 2.08681 2.22131 2.27344 2.58385 2.73921 2.87678 2.96411 3.32967 3.42790 3.81164 3.90434 3.99932 4.10287 4.15656 4.19932 4.27986 4.38761 4.40246 4.47969 4.62813 4.67284 4.71899 4.81363 4.86442 4.88841 4.92859 5.07867 5.09667 5.17428 5.29994 5.38259 5.42898 5.55180 5.67775 5.95446 6.06802 6.11785 6.21534 6.28402 6.66541 6.85204 7.15899 7.32075 7.52520 7.77120 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003694 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.215708 B = 7578.307086 C = 8629.979421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.525 5.525 3 C 0.123 3.877 4 C -0.197 4.197 5 C -0.023 4.023 6 C -0.235 4.235 7 C 0.429 3.571 8 N -0.643 5.643 9 C 0.384 3.616 10 C -0.378 4.378 11 H 0.110 0.890 12 C 0.046 3.954 13 N -0.727 5.727 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.260 1.260 17 H -0.248 1.248 18 C -0.318 4.318 19 C 0.331 3.669 20 N -0.551 5.551 21 C 0.316 3.684 22 N -0.557 5.557 23 N -0.564 5.564 24 C 0.141 3.859 25 C -0.004 4.004 26 C -0.164 4.164 27 C -0.171 4.171 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.398 0.602 36 H 0.308 0.692 37 H 0.161 0.839 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 -4.482 19.297 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.249 5.249 3 C -0.004 4.004 4 C -0.202 4.202 5 C -0.049 4.049 6 C -0.260 4.260 7 C 0.195 3.805 8 N -0.265 5.265 9 C 0.278 3.722 10 C -0.405 4.405 11 H 0.128 0.872 12 C -0.184 4.184 13 N -0.346 5.346 14 Si 0.801 3.199 15 H -0.185 1.185 16 H -0.184 1.184 17 H -0.171 1.171 18 C -0.337 4.337 19 C 0.025 3.975 20 N -0.234 5.234 21 C 0.010 3.990 22 N -0.240 5.240 23 N -0.280 5.280 24 C -0.017 4.017 25 C -0.112 4.112 26 C -0.201 4.201 27 C -0.208 4.208 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.234 0.766 36 H 0.121 0.879 37 H 0.178 0.822 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.222 -4.872 17.432 18.586 hybrid contribution 0.385 0.917 0.709 1.221 sum 4.607 -3.956 18.141 19.130 Atomic orbital electron populations 1.22352 0.87150 1.02074 1.00448 1.61744 1.08054 1.13705 1.41441 1.20699 1.00583 0.86763 0.92391 1.20411 0.97318 1.04802 0.97703 1.21338 0.98992 0.93827 0.90771 1.21675 0.98478 1.04701 1.01137 1.18060 0.89351 0.87887 0.85222 1.41277 1.17574 1.57547 1.10122 1.16719 0.87550 0.85345 0.82574 1.20486 0.97132 1.09905 1.13022 0.87200 1.27083 1.02414 0.97384 0.91554 1.69567 1.33163 1.20048 1.11801 0.85105 0.76453 0.79089 0.79278 1.18500 1.18441 1.17103 1.13056 0.96981 1.32343 0.91314 1.24755 0.91304 0.90366 0.91124 1.81049 1.13279 1.17071 1.12010 1.25361 0.91662 0.90401 0.91625 1.81049 1.14941 1.18240 1.09787 1.67036 1.35577 1.25312 1.00104 1.22460 0.94306 0.91316 0.93603 1.22501 1.05203 0.89955 0.93560 1.23093 0.93204 1.01377 1.02466 1.23088 0.98223 0.96399 1.03115 0.92748 0.91237 0.94529 0.89333 0.93068 0.83657 0.85101 0.76596 0.87926 0.82191 0.88278 0.89506 0.87279 0.87136 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.00 127.69 1.15 1.71 16 2 N -0.53 -10.89 4.90 -901.64 -4.42 -15.31 16 3 C 0.12 2.52 5.10 85.56 0.44 2.96 16 4 C -0.20 -5.31 4.90 -19.76 -0.10 -5.40 16 5 C -0.02 -0.69 9.85 22.44 0.22 -0.47 16 6 C -0.24 -8.42 8.78 22.50 0.20 -8.23 16 7 C 0.43 16.55 6.23 133.01 0.83 17.37 16 8 N -0.64 -25.98 3.31 -184.71 -0.61 -26.59 16 9 C 0.38 15.88 4.96 39.00 0.19 16.07 16 10 C -0.38 -14.85 6.52 23.08 0.15 -14.70 16 11 H 0.11 4.31 7.28 -2.91 -0.02 4.29 16 12 C 0.05 1.65 5.21 85.55 0.45 2.10 16 13 N -0.73 -27.19 10.92 21.98 0.24 -26.95 16 14 Si 0.98 28.55 29.57 68.60 2.03 30.58 16 15 H -0.26 -7.72 7.11 99.48 0.71 -7.01 16 16 H -0.26 -7.24 7.11 99.48 0.71 -6.53 16 17 H -0.25 -7.18 7.11 99.48 0.71 -6.47 16 18 C -0.32 -13.99 5.88 -20.07 -0.12 -14.10 16 19 C 0.33 15.07 14.05 88.33 1.24 16.31 16 20 N -0.55 -25.88 18.54 19.00 0.35 -25.53 16 21 C 0.32 14.66 14.82 88.33 1.31 15.97 16 22 N -0.56 -27.07 18.54 19.01 0.35 -26.72 16 23 N -0.56 -20.78 10.39 -193.16 -2.01 -22.78 16 24 C 0.14 4.22 9.13 84.63 0.77 5.00 16 25 C 0.00 -0.06 5.27 44.91 0.24 0.17 16 26 C -0.16 -2.48 10.46 30.60 0.32 -2.16 16 27 C -0.17 -2.46 9.72 30.59 0.30 -2.16 16 28 H 0.05 1.33 6.17 -2.39 -0.01 1.32 16 29 H 0.07 1.33 6.76 -2.39 -0.02 1.31 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.66 8.03 -2.38 -0.02 1.64 16 32 H 0.05 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 34 H 0.13 4.85 6.14 -2.91 -0.02 4.84 16 35 H 0.40 16.43 8.94 -92.71 -0.83 15.60 16 36 H 0.31 10.52 8.29 -92.71 -0.77 9.75 16 37 H 0.16 3.91 8.03 -2.92 -0.02 3.89 16 38 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.46 7.25 -2.39 -0.02 1.44 16 Total: -1.00 -52.14 371.05 3.77 -48.36 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.25 Total: 34.49 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 7.58 Total: 30.45 kcal Atomic # 7 Polarization: -137.79 SS G_CDS: -6.09 Total: -143.88 kcal Atomic # 14 Polarization: 28.55 SS G_CDS: 2.03 Total: 30.58 kcal Total: -52.14 3.77 -48.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.250 kcal (2) G-P(sol) polarization free energy of solvation -52.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds