Wall clock time and date at job start Tue Mar 31 2020 13:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00128 * 2 1 4 4 H 1.08006 * 119.99662 * 37.87239 * 3 2 1 5 5 C 1.38806 * 120.00237 * 217.87787 * 3 2 1 6 6 N 1.31619 * 120.00301 * 25.82356 * 5 3 2 7 7 Si 1.86806 * 120.00052 * 205.82135 * 5 3 2 8 8 H 1.48495 * 109.47130 * 175.00095 * 7 5 3 9 9 H 1.48499 * 109.46891 * 295.00359 * 7 5 3 10 10 H 1.48498 * 109.46877 * 54.99882 * 7 5 3 11 11 C 1.46503 * 120.00317 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46966 * 266.38709 * 11 2 1 13 13 H 1.08997 * 109.58395 * 298.63927 * 12 11 2 14 14 C 1.53187 * 109.58875 * 59.06932 * 12 11 2 15 15 C 1.53043 * 109.31649 * 174.41934 * 14 12 11 16 16 C 1.53036 * 109.53613 * 298.63805 * 15 14 12 17 17 C 1.53190 * 109.31795 * 61.36321 * 16 15 14 18 18 N 1.46931 * 109.58374 * 178.35805 * 12 11 2 19 19 C 1.34775 * 120.63130 * 6.58288 * 18 12 11 20 20 O 1.21277 * 119.99889 * 4.66525 * 19 18 12 21 21 C 1.50695 * 119.99988 * 184.66570 * 19 18 12 22 22 C 1.50702 * 109.47258 * 182.99460 * 21 19 18 23 23 C 1.33634 * 122.74933 * 124.05156 * 22 21 19 24 24 S 1.76197 * 107.92382 * 179.97438 * 23 22 21 25 25 C 1.70974 * 90.28160 * 0.27237 * 24 23 22 26 26 N 1.29020 * 110.16877 * 359.84301 * 25 24 23 27 27 H 1.09008 * 109.46881 * 91.46781 * 1 2 3 28 28 H 1.09004 * 109.46923 * 211.45953 * 1 2 3 29 29 H 1.08995 * 109.47446 * 331.46404 * 1 2 3 30 30 H 0.97003 * 119.99660 * 5.57252 * 6 5 3 31 31 H 1.09001 * 109.46932 * 26.38813 * 11 2 1 32 32 H 1.08996 * 109.47272 * 146.38113 * 11 2 1 33 33 H 1.08999 * 109.50151 * 294.37561 * 14 12 11 34 34 H 1.09004 * 109.49915 * 54.47103 * 14 12 11 35 35 H 1.08995 * 109.46200 * 178.61215 * 15 14 12 36 36 H 1.09000 * 109.44579 * 58.64724 * 15 14 12 37 37 H 1.08996 * 109.49775 * 301.40886 * 16 15 14 38 38 H 1.09000 * 109.52456 * 181.33068 * 16 15 14 39 39 H 1.08996 * 109.58880 * 185.57728 * 17 16 15 40 40 H 1.09001 * 109.70458 * 65.21473 * 17 16 15 41 41 H 1.08999 * 109.47166 * 302.99660 * 21 19 18 42 42 H 1.09000 * 109.47442 * 62.99423 * 21 19 18 43 43 H 1.08000 * 126.04052 * 0.03959 * 23 22 21 44 44 H 1.08004 * 124.91363 * 179.83846 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7802 2.0227 0.5742 5 6 3.3184 1.3126 -0.7380 6 7 3.5150 0.5531 -1.7949 7 14 4.6124 2.5610 -0.2314 8 1 5.8070 2.4165 -1.1015 9 1 4.0596 3.9320 -0.3730 10 1 4.9989 2.3269 1.1831 11 6 2.1976 -1.2687 0.0006 12 6 2.5313 -1.6642 1.4404 13 1 3.1668 -0.9018 1.8907 14 6 1.2371 -1.8012 2.2484 15 6 1.5666 -2.3308 3.6460 16 6 2.2124 -3.7134 3.5302 17 6 3.5177 -3.5982 2.7367 18 7 3.2316 -2.9559 1.4465 19 6 3.6042 -3.5406 0.2908 20 8 3.4382 -2.9624 -0.7623 21 6 4.2268 -4.9128 0.3070 22 6 4.6161 -5.3044 -1.0952 23 6 5.8608 -5.6598 -1.4273 24 16 5.8763 -6.0360 -3.1486 25 6 4.2093 -5.6703 -3.2521 26 7 3.7584 -5.3184 -2.0956 27 1 -0.3633 -0.0263 -1.0274 28 1 -0.3633 -0.8766 0.5364 29 1 -0.3634 0.9028 0.4909 30 1 2.8108 -0.0372 -2.1056 31 1 1.5820 -2.0439 -0.4558 32 1 3.1203 -1.1557 -0.5684 33 1 0.7559 -0.8268 2.3328 34 1 0.5656 -2.4967 1.7449 35 1 0.6502 -2.4059 4.2313 36 1 2.2576 -1.6474 4.1394 37 1 1.5318 -4.3908 3.0146 38 1 2.4254 -4.1006 4.5266 39 1 3.9307 -4.5924 2.5663 40 1 4.2346 -2.9952 3.2940 41 1 5.1136 -4.9019 0.9407 42 1 3.5089 -5.6330 0.6993 43 1 6.7074 -5.7089 -0.7586 44 1 3.6192 -5.7257 -4.1550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158559218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:09 Heat of formation + Delta-G solvation = 51.843230 kcal Electronic energy + Delta-G solvation = -26611.955268 eV Core-core repulsion = 23078.728637 eV Total energy + Delta-G solvation = -3533.226631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36756 -39.32841 -36.87700 -35.56907 -32.77964 -32.04310 -31.39018 -30.32256 -28.24408 -26.50182 -25.19573 -24.83265 -24.15839 -22.34006 -20.95164 -20.26043 -19.48377 -18.73426 -17.74025 -17.27768 -16.21818 -15.82792 -15.36358 -15.02643 -14.37955 -14.25793 -13.99790 -13.73555 -13.61287 -13.46398 -13.41199 -13.19245 -12.95963 -12.81899 -12.77285 -12.38201 -11.87280 -11.52323 -11.34448 -11.10586 -10.98993 -10.97295 -10.63181 -10.61003 -10.35193 -10.05613 -10.01944 -9.94446 -9.50112 -9.36476 -9.18192 -8.84290 -8.45612 -8.19996 -7.95077 -6.54450 -5.78945 -3.17943 0.80143 1.47109 1.78130 2.87397 3.17292 3.49250 3.55959 3.58798 3.77200 4.26294 4.72663 4.81551 4.88954 4.97994 5.01862 5.16528 5.21993 5.27554 5.39584 5.47218 5.52243 5.59063 5.61039 5.71510 5.79504 5.95222 6.01243 6.05118 6.14286 6.25340 6.28704 6.44481 6.51225 6.61488 6.68460 6.82082 6.92766 7.06882 7.24858 7.86110 7.88788 8.01000 8.27973 8.73681 8.87475 9.38581 10.03993 10.51981 11.36057 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.005108 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.471304 B = 5480.421325 C = 7006.071734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.601 5.601 3 C -0.363 4.363 4 H 0.045 0.955 5 C -0.017 4.017 6 N -0.893 5.893 7 Si 1.059 2.941 8 H -0.286 1.286 9 H -0.293 1.293 10 H -0.294 1.294 11 C 0.147 3.853 12 C 0.131 3.869 13 H 0.068 0.932 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.132 4.132 17 C 0.107 3.893 18 N -0.611 5.611 19 C 0.506 3.494 20 O -0.487 6.487 21 C -0.067 4.067 22 C 0.090 3.910 23 C -0.255 4.255 24 S 0.099 5.901 25 C 0.030 3.970 26 N -0.439 5.439 27 H -0.003 1.003 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.274 0.726 31 H 0.032 0.968 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.176 0.824 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -16.932 6.927 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.325 5.325 3 C -0.492 4.492 4 H 0.063 0.937 5 C -0.222 4.222 6 N -0.531 5.531 7 Si 0.889 3.111 8 H -0.212 1.212 9 H -0.220 1.220 10 H -0.222 1.222 11 C 0.021 3.979 12 C 0.026 3.974 13 H 0.086 0.914 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.170 4.170 17 C -0.017 4.017 18 N -0.348 5.348 19 C 0.292 3.708 20 O -0.359 6.359 21 C -0.110 4.110 22 C -0.043 4.043 23 C -0.394 4.394 24 S 0.351 5.649 25 C -0.269 4.269 26 N -0.151 5.151 27 H 0.015 0.985 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.193 0.807 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.000 -16.212 5.248 17.759 hybrid contribution -1.885 -0.245 1.433 2.380 sum 3.115 -16.457 6.681 18.033 Atomic orbital electron populations 1.21148 0.86648 0.97783 0.96891 1.44076 0.99647 1.02748 1.86074 1.19742 1.10030 0.91835 1.27615 0.93685 1.25864 1.00815 1.02202 0.93302 1.70688 1.38102 1.25524 1.18757 0.83643 0.76691 0.75353 0.75432 1.21175 1.22010 1.22161 1.21735 0.99939 0.85471 0.90779 1.22235 0.91375 0.81743 1.02004 0.91391 1.21940 0.98174 1.01486 0.94235 1.21546 1.00155 0.96062 0.98012 1.21892 0.97244 0.98206 0.99703 1.21671 0.97029 0.97757 0.85223 1.48310 1.58885 1.22663 1.04892 1.20197 0.79551 0.86875 0.84200 1.90898 1.52184 1.62327 1.30474 1.20324 1.02395 0.96615 0.91688 1.19678 0.88684 1.00469 0.95487 1.26731 1.01751 1.12465 0.98451 1.83864 1.12397 1.63106 1.05544 1.28389 0.95922 1.02631 0.99997 1.66017 1.36959 1.13392 0.98726 0.98472 0.95719 0.95002 0.91432 0.94939 0.86779 0.90301 0.92831 0.92449 0.92037 0.91792 0.91375 0.90458 0.91646 0.87964 0.87739 0.80705 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.83 9.73 59.85 0.58 3.42 16 2 N -0.60 -16.18 2.24 -181.12 -0.41 -16.59 16 3 C -0.36 -10.66 9.36 -15.06 -0.14 -10.80 16 4 H 0.05 1.34 7.95 -52.48 -0.42 0.92 16 5 C -0.02 -0.50 4.87 -17.43 -0.08 -0.58 16 6 N -0.89 -28.65 12.26 55.49 0.68 -27.97 16 7 Si 1.06 26.52 29.99 -169.99 -5.10 21.42 16 8 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.15 3.75 2.86 -4.04 -0.01 3.74 16 12 C 0.13 2.73 3.20 -67.60 -0.22 2.51 16 13 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 14 C -0.12 -2.12 4.02 -26.61 -0.11 -2.22 16 15 C -0.12 -1.62 5.88 -26.69 -0.16 -1.77 16 16 C -0.13 -1.48 6.08 -26.61 -0.16 -1.64 16 17 C 0.11 1.29 6.33 -3.71 -0.02 1.27 16 18 N -0.61 -10.59 2.97 -165.22 -0.49 -11.08 16 19 C 0.51 9.45 7.52 -10.99 -0.08 9.36 16 20 O -0.49 -11.70 10.95 5.56 0.06 -11.64 16 21 C -0.07 -0.90 4.57 -29.04 -0.13 -1.04 16 22 C 0.09 1.35 5.65 -84.23 -0.48 0.87 16 23 C -0.25 -3.16 11.07 29.12 0.32 -2.84 16 24 S 0.10 1.12 23.22 -107.50 -2.50 -1.38 16 25 C 0.03 0.40 12.23 51.58 0.63 1.04 16 26 N -0.44 -7.39 9.65 -11.90 -0.11 -7.51 16 27 H 0.00 -0.07 8.14 -51.92 -0.42 -0.49 16 28 H 0.02 0.51 6.38 -51.93 -0.33 0.18 16 29 H 0.03 0.71 8.03 -51.93 -0.42 0.30 16 30 H 0.27 9.16 7.20 -40.82 -0.29 8.86 16 31 H 0.03 0.86 7.13 -51.93 -0.37 0.49 16 32 H 0.11 3.37 3.60 -51.93 -0.19 3.18 16 33 H 0.08 1.52 6.76 -51.93 -0.35 1.17 16 34 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.70 5.92 -51.93 -0.31 0.39 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.03 7.48 -51.93 -0.39 0.64 16 42 H 0.10 1.18 8.00 -51.93 -0.42 0.76 16 43 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.20 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -36.69 355.38 -9.06 -45.74 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.49 Total: 2.33 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.06 Total: 1.31 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -0.33 Total: -63.14 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.06 Total: -11.64 kcal Atomic # 14 Polarization: 26.52 SS G_CDS: -5.10 Total: 21.42 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.69 -9.06 -45.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158559218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.585 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds