Wall clock time and date at job start Tue Mar 31 2020 13:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00128 * 2 1 4 4 H 1.08006 * 119.99662 * 37.87239 * 3 2 1 5 5 C 1.38806 * 120.00237 * 217.87787 * 3 2 1 6 6 N 1.31619 * 120.00301 * 25.82356 * 5 3 2 7 7 Si 1.86806 * 120.00052 * 205.82135 * 5 3 2 8 8 H 1.48495 * 109.47130 * 175.00095 * 7 5 3 9 9 H 1.48499 * 109.46891 * 295.00359 * 7 5 3 10 10 H 1.48498 * 109.46877 * 54.99882 * 7 5 3 11 11 C 1.46503 * 120.00317 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46966 * 266.38709 * 11 2 1 13 13 H 1.08997 * 109.58395 * 298.63927 * 12 11 2 14 14 C 1.53187 * 109.58875 * 59.06932 * 12 11 2 15 15 C 1.53043 * 109.31649 * 174.41934 * 14 12 11 16 16 C 1.53036 * 109.53613 * 298.63805 * 15 14 12 17 17 C 1.53190 * 109.31795 * 61.36321 * 16 15 14 18 18 N 1.46931 * 109.58374 * 178.35805 * 12 11 2 19 19 C 1.34775 * 120.63130 * 6.58288 * 18 12 11 20 20 O 1.21277 * 119.99889 * 4.66525 * 19 18 12 21 21 C 1.50695 * 119.99988 * 184.66570 * 19 18 12 22 22 C 1.50702 * 109.47258 * 182.99460 * 21 19 18 23 23 C 1.33634 * 122.74933 * 124.05156 * 22 21 19 24 24 S 1.76197 * 107.92382 * 179.97438 * 23 22 21 25 25 C 1.70974 * 90.28160 * 0.27237 * 24 23 22 26 26 N 1.29020 * 110.16877 * 359.84301 * 25 24 23 27 27 H 1.09008 * 109.46881 * 91.46781 * 1 2 3 28 28 H 1.09004 * 109.46923 * 211.45953 * 1 2 3 29 29 H 1.08995 * 109.47446 * 331.46404 * 1 2 3 30 30 H 0.97003 * 119.99660 * 5.57252 * 6 5 3 31 31 H 1.09001 * 109.46932 * 26.38813 * 11 2 1 32 32 H 1.08996 * 109.47272 * 146.38113 * 11 2 1 33 33 H 1.08999 * 109.50151 * 294.37561 * 14 12 11 34 34 H 1.09004 * 109.49915 * 54.47103 * 14 12 11 35 35 H 1.08995 * 109.46200 * 178.61215 * 15 14 12 36 36 H 1.09000 * 109.44579 * 58.64724 * 15 14 12 37 37 H 1.08996 * 109.49775 * 301.40886 * 16 15 14 38 38 H 1.09000 * 109.52456 * 181.33068 * 16 15 14 39 39 H 1.08996 * 109.58880 * 185.57728 * 17 16 15 40 40 H 1.09001 * 109.70458 * 65.21473 * 17 16 15 41 41 H 1.08999 * 109.47166 * 302.99660 * 21 19 18 42 42 H 1.09000 * 109.47442 * 62.99423 * 21 19 18 43 43 H 1.08000 * 126.04052 * 0.03959 * 23 22 21 44 44 H 1.08004 * 124.91363 * 179.83846 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7802 2.0227 0.5742 5 6 3.3184 1.3126 -0.7380 6 7 3.5150 0.5531 -1.7949 7 14 4.6124 2.5610 -0.2314 8 1 5.8070 2.4165 -1.1015 9 1 4.0596 3.9320 -0.3730 10 1 4.9989 2.3269 1.1831 11 6 2.1976 -1.2687 0.0006 12 6 2.5313 -1.6642 1.4404 13 1 3.1668 -0.9018 1.8907 14 6 1.2371 -1.8012 2.2484 15 6 1.5666 -2.3308 3.6460 16 6 2.2124 -3.7134 3.5302 17 6 3.5177 -3.5982 2.7367 18 7 3.2316 -2.9559 1.4465 19 6 3.6042 -3.5406 0.2908 20 8 3.4382 -2.9624 -0.7623 21 6 4.2268 -4.9128 0.3070 22 6 4.6161 -5.3044 -1.0952 23 6 5.8608 -5.6598 -1.4273 24 16 5.8763 -6.0360 -3.1486 25 6 4.2093 -5.6703 -3.2521 26 7 3.7584 -5.3184 -2.0956 27 1 -0.3633 -0.0263 -1.0274 28 1 -0.3633 -0.8766 0.5364 29 1 -0.3634 0.9028 0.4909 30 1 2.8108 -0.0372 -2.1056 31 1 1.5820 -2.0439 -0.4558 32 1 3.1203 -1.1557 -0.5684 33 1 0.7559 -0.8268 2.3328 34 1 0.5656 -2.4967 1.7449 35 1 0.6502 -2.4059 4.2313 36 1 2.2576 -1.6474 4.1394 37 1 1.5318 -4.3908 3.0146 38 1 2.4254 -4.1006 4.5266 39 1 3.9307 -4.5924 2.5663 40 1 4.2346 -2.9952 3.2940 41 1 5.1136 -4.9019 0.9407 42 1 3.5089 -5.6330 0.6993 43 1 6.7074 -5.7089 -0.7586 44 1 3.6192 -5.7257 -4.1550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158559218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:09 Heat of formation + Delta-G solvation = 26.924912 kcal Electronic energy + Delta-G solvation = -26613.035807 eV Core-core repulsion = 23078.728637 eV Total energy + Delta-G solvation = -3534.307171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66604 -40.48921 -38.32342 -37.46629 -34.16526 -33.47605 -33.04095 -31.93137 -29.32632 -28.14369 -27.28275 -26.00260 -25.42072 -23.91134 -22.52749 -21.80064 -20.59152 -19.96604 -19.34606 -18.80125 -17.65106 -17.15947 -16.54844 -16.35791 -15.99149 -15.76010 -15.50396 -15.40653 -15.07552 -14.99759 -14.74320 -14.52049 -14.21818 -14.10139 -14.00014 -13.79722 -13.21728 -13.15523 -12.92092 -12.80118 -12.62751 -12.37639 -12.24921 -11.96694 -11.87715 -11.84666 -11.61501 -11.42557 -11.30677 -10.52062 -10.45733 -10.37656 -10.13136 -9.69937 -9.40943 -8.81808 -8.08105 -5.52306 -0.17348 0.55584 0.80712 1.50795 1.60272 1.77426 1.78860 1.81702 2.24362 2.64835 3.23826 3.30467 3.65604 3.79703 3.91173 3.97806 4.02077 4.07501 4.19248 4.26984 4.37890 4.42333 4.45074 4.54137 4.60029 4.61996 4.69695 4.75534 4.80711 4.89143 4.91507 5.02389 5.07552 5.12558 5.17345 5.25646 5.27274 5.48075 5.60520 5.90183 5.95122 6.37242 6.62607 6.90300 7.13588 7.44609 7.82475 8.27333 8.96011 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.005108 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.471304 B = 5480.421325 C = 7006.071734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.619 5.619 3 C -0.366 4.366 4 H 0.042 0.958 5 C -0.070 4.070 6 N -0.919 5.919 7 Si 1.111 2.889 8 H -0.293 1.293 9 H -0.271 1.271 10 H -0.275 1.275 11 C 0.162 3.838 12 C 0.141 3.859 13 H 0.039 0.961 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.098 3.902 18 N -0.612 5.612 19 C 0.493 3.507 20 O -0.553 6.553 21 C -0.054 4.054 22 C 0.054 3.946 23 C -0.252 4.252 24 S 0.153 5.847 25 C 0.003 3.997 26 N -0.489 5.489 27 H -0.017 1.017 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.249 0.751 31 H 0.008 0.992 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.208 0.792 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -18.626 9.958 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.345 5.345 3 C -0.496 4.496 4 H 0.060 0.940 5 C -0.268 4.268 6 N -0.558 5.558 7 Si 0.934 3.066 8 H -0.219 1.219 9 H -0.197 1.197 10 H -0.201 1.201 11 C 0.036 3.964 12 C 0.035 3.965 13 H 0.057 0.943 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.163 4.163 17 C -0.024 4.024 18 N -0.347 5.347 19 C 0.281 3.719 20 O -0.429 6.429 21 C -0.096 4.096 22 C -0.078 4.078 23 C -0.391 4.391 24 S 0.406 5.594 25 C -0.295 4.295 26 N -0.203 5.203 27 H 0.001 0.999 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.225 0.775 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.511 -17.947 8.338 20.833 hybrid contribution -2.383 0.240 0.428 2.433 sum 4.128 -17.706 8.766 20.184 Atomic orbital electron populations 1.21176 0.85054 0.99412 0.96454 1.44349 1.00977 1.02726 1.86423 1.19974 1.10363 0.92605 1.26664 0.93987 1.27384 1.03292 1.03523 0.92643 1.70842 1.37273 1.26977 1.20758 0.82965 0.73842 0.74002 0.75741 1.21917 1.19668 1.20107 1.21368 0.97457 0.84097 0.93439 1.21648 0.92906 0.83323 0.98582 0.94264 1.21780 0.95866 1.00505 0.96669 1.21532 1.01499 0.97463 0.94808 1.21894 0.96259 0.96512 1.01678 1.22120 0.98174 0.99456 0.82615 1.48399 1.57969 1.21307 1.07047 1.21238 0.78706 0.88545 0.83399 1.90885 1.54817 1.64368 1.32855 1.20368 1.04135 0.93007 0.92106 1.19993 0.89601 1.02254 0.95972 1.27206 1.01772 1.10545 0.99621 1.83599 1.09823 1.61407 1.04577 1.28741 0.97955 1.02799 0.99999 1.66019 1.39199 1.14919 1.00168 0.99911 0.93219 0.94065 0.94082 0.97398 0.90440 0.92443 0.93522 0.90374 0.92006 0.91799 0.87353 0.86471 0.90717 0.83923 0.85324 0.77463 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 6.03 9.73 127.77 1.24 7.27 16 2 N -0.62 -34.91 2.24 -726.94 -1.63 -36.54 16 3 C -0.37 -22.23 9.36 84.03 0.79 -21.45 16 4 H 0.04 2.54 7.95 -2.91 -0.02 2.52 16 5 C -0.07 -4.30 4.87 84.86 0.41 -3.89 16 6 N -0.92 -61.97 12.26 21.65 0.27 -61.71 16 7 Si 1.11 54.37 29.99 68.60 2.06 56.42 16 8 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 C 0.16 8.77 2.86 86.38 0.25 9.02 16 12 C 0.14 6.03 3.20 44.97 0.14 6.18 16 13 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 14 C -0.11 -3.85 4.02 30.67 0.12 -3.72 16 15 C -0.12 -2.79 5.88 30.62 0.18 -2.61 16 16 C -0.13 -2.27 6.08 30.67 0.19 -2.09 16 17 C 0.10 2.00 6.33 86.36 0.55 2.55 16 18 N -0.61 -20.81 2.97 -795.04 -2.36 -23.17 16 19 C 0.49 18.53 7.52 87.66 0.66 19.18 16 20 O -0.55 -28.16 10.95 -3.02 -0.03 -28.20 16 21 C -0.05 -1.34 4.57 29.10 0.13 -1.21 16 22 C 0.05 1.58 5.65 41.52 0.23 1.82 16 23 C -0.25 -5.73 11.07 66.77 0.74 -4.99 16 24 S 0.15 3.27 23.22 -56.49 -1.31 1.95 16 25 C 0.00 0.08 12.23 130.66 1.60 1.68 16 26 N -0.49 -16.95 9.65 -191.55 -1.85 -18.80 16 27 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 28 H 0.05 2.12 6.38 -2.39 -0.02 2.10 16 29 H 0.04 1.89 8.03 -2.39 -0.02 1.87 16 30 H 0.25 17.83 7.20 -92.71 -0.67 17.16 16 31 H 0.01 0.44 7.13 -2.39 -0.02 0.42 16 32 H 0.08 4.90 3.60 -2.39 -0.01 4.89 16 33 H 0.06 2.23 6.76 -2.39 -0.02 2.21 16 34 H 0.05 1.67 7.87 -2.39 -0.02 1.65 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 1.50 5.92 -2.39 -0.01 1.49 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.14 2.26 7.48 -2.39 -0.02 2.25 16 42 H 0.13 2.50 8.00 -2.39 -0.02 2.48 16 43 H 0.21 3.08 8.06 -2.91 -0.02 3.06 16 44 H 0.21 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -88.37 355.38 3.47 -84.90 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.10 Total: 17.40 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 7.23 Total: 7.74 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -5.57 Total: -140.22 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.03 Total: -28.20 kcal Atomic # 14 Polarization: 54.37 SS G_CDS: 2.06 Total: 56.42 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.31 Total: 1.95 kcal Total: -88.37 3.47 -84.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158559218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.823 kcal (2) G-P(sol) polarization free energy of solvation -88.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds