Wall clock time and date at job start Tue Mar 31 2020 13:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36265 * 126.34500 * 2 1 4 4 N 1.30136 * 110.02357 * 180.02562 * 3 2 1 5 5 C 1.35568 * 109.58030 * 0.02562 * 4 3 2 6 6 C 1.37425 * 126.33814 * 180.02562 * 2 1 3 7 7 C 1.39301 * 135.20865 * 359.97438 * 6 2 1 8 8 C 1.36658 * 119.07589 * 180.02562 * 7 6 2 9 9 N 1.32357 * 121.50306 * 359.67727 * 8 7 6 10 10 C 1.32241 * 122.25961 * 0.64208 * 9 8 7 11 11 N 1.38869 * 120.01771 * 179.66597 * 10 9 8 12 12 C 1.46898 * 111.00094 * 59.48379 * 11 10 9 13 13 C 1.50705 * 109.46928 * 68.91798 * 12 11 10 14 14 H 1.08006 * 119.99974 * 4.62155 * 13 12 11 15 15 C 1.37878 * 120.00036 * 184.61966 * 13 12 11 16 16 N 1.31513 * 120.00153 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99838 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47139 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47245 * 119.99825 * 17 15 13 20 20 H 1.48506 * 109.46864 * 240.00016 * 17 15 13 21 21 C 1.46900 * 110.99824 * 295.53873 * 11 10 9 22 22 C 1.50699 * 109.47018 * 189.99828 * 21 11 10 23 23 C 1.38668 * 120.41845 * 270.25485 * 22 21 11 24 24 C 1.38632 * 118.42102 * 180.22453 * 23 22 21 25 25 C 1.38227 * 119.15995 * 359.47662 * 24 23 22 26 26 N 1.31854 * 120.76512 * 0.30463 * 25 24 23 27 27 C 1.31887 * 121.72505 * 359.97438 * 26 25 24 28 28 H 1.09006 * 109.46709 * 269.99798 * 1 2 3 29 29 H 1.09000 * 109.46955 * 29.98749 * 1 2 3 30 30 H 1.08994 * 109.47816 * 149.99811 * 1 2 3 31 31 H 1.08000 * 124.98942 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.46155 * 359.97338 * 7 6 2 33 33 H 1.08004 * 119.24434 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47354 * 188.91830 * 12 11 10 35 35 H 1.09001 * 109.47827 * 308.92350 * 12 11 10 36 36 H 0.96996 * 119.99907 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.47596 * 69.99635 * 21 11 10 38 38 H 1.09000 * 109.46764 * 309.99353 * 21 11 10 39 39 H 1.07997 * 120.79076 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.42265 * 179.75777 * 24 23 22 41 41 H 1.08000 * 119.61667 * 180.27803 * 25 24 23 42 42 H 1.07996 * 119.62103 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2726 1.0976 0.0000 4 7 3.5215 0.7318 -0.0005 5 6 3.5986 -0.6216 -0.0015 6 6 2.2793 -1.1070 -0.0005 7 6 2.0746 -2.4849 -0.0007 8 6 3.1583 -3.3174 -0.0007 9 7 4.3942 -2.8437 -0.0069 10 6 4.6532 -1.5470 -0.0009 11 7 5.9684 -1.1012 -0.0008 12 6 6.6886 -1.5858 -1.1859 13 6 6.1448 -0.9070 -2.4166 14 1 5.3969 -0.1338 -2.3209 15 6 6.6023 -1.2730 -3.6647 16 7 7.5134 -2.2141 -3.7813 17 14 5.9287 -0.4310 -5.1902 18 1 4.9220 0.5851 -4.7910 19 1 7.0388 0.2317 -5.9207 20 1 5.2894 -1.4409 -6.0715 21 6 6.6588 -1.4983 1.2336 22 6 7.9906 -0.7975 1.3119 23 6 9.1235 -1.3795 0.7636 24 6 10.3282 -0.7007 0.8634 25 6 10.3577 0.5300 1.4921 26 7 9.2593 1.0553 1.9982 27 6 8.0973 0.4356 1.9265 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8899 -0.5138 31 1 1.9269 2.1208 0.0004 32 1 1.0733 -2.8896 0.0000 33 1 3.0027 -4.3861 -0.0004 34 1 7.7498 -1.3584 -1.0844 35 1 6.5551 -2.6638 -1.2767 36 1 7.8349 -2.4718 -4.6594 37 1 6.8154 -2.5770 1.2314 38 1 6.0511 -1.2211 2.0949 39 1 9.0695 -2.3406 0.2740 40 1 11.2313 -1.1259 0.4512 41 1 11.2913 1.0672 1.5700 42 1 7.2189 0.8974 2.3523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164004307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:44 Heat of formation + Delta-G solvation = 148.049780 kcal Electronic energy + Delta-G solvation = -26987.621329 eV Core-core repulsion = 23355.415326 eV Total energy + Delta-G solvation = -3632.206003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00580 -39.80008 -38.60800 -36.17701 -34.00703 -32.69533 -32.12327 -31.26882 -30.45555 -28.83785 -27.34468 -27.10663 -24.99893 -23.44523 -22.98545 -22.57621 -21.99570 -21.04846 -19.62702 -17.40396 -17.23183 -16.62234 -16.31775 -15.85438 -15.71210 -15.52723 -15.07309 -14.85983 -14.58102 -14.30661 -13.78939 -13.48306 -13.32220 -13.04724 -12.93162 -12.76751 -12.57976 -12.51364 -12.10853 -12.06990 -11.87573 -11.30838 -10.94749 -10.64542 -10.61950 -10.15813 -9.97155 -9.74467 -9.35588 -9.23877 -9.17122 -8.96352 -8.59113 -8.56547 -8.38005 -7.75096 -7.50521 -5.97687 -3.95970 1.17649 1.57289 1.76970 1.84304 2.68491 3.10567 3.32972 3.39806 3.46783 4.14951 4.28934 4.47713 4.53416 4.57673 4.61220 4.80543 4.88173 4.96078 5.17304 5.20505 5.24533 5.31033 5.34914 5.39935 5.45245 5.52190 5.54223 5.66557 5.78200 6.02556 6.05411 6.16373 6.26533 6.40998 6.49244 6.59350 6.78560 6.88329 7.13466 7.19368 7.26265 7.46522 7.79848 8.01842 8.11173 8.29741 8.40567 8.48493 8.60309 9.12170 9.66377 11.13347 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.005496 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.453749 B = 5092.987977 C = 6718.581057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.498 5.498 3 C 0.233 3.767 4 N -0.443 5.443 5 C 0.023 3.977 6 C 0.078 3.922 7 C -0.190 4.190 8 C 0.117 3.883 9 N -0.519 5.519 10 C 0.421 3.579 11 N -0.480 5.480 12 C 0.192 3.808 13 C -0.500 4.500 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.286 1.286 21 C 0.106 3.894 22 C -0.113 4.113 23 C -0.054 4.054 24 C -0.175 4.175 25 C 0.088 3.912 26 N -0.493 5.493 27 C 0.117 3.883 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.212 0.788 32 H 0.124 0.876 33 H 0.153 0.847 34 H 0.041 0.959 35 H 0.017 0.983 36 H 0.259 0.741 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.148 0.852 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 1.338 11.102 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.190 5.190 3 C -0.052 4.052 4 N -0.160 5.160 5 C -0.099 4.099 6 C -0.038 4.038 7 C -0.214 4.214 8 C -0.034 4.034 9 N -0.234 5.234 10 C 0.183 3.817 11 N -0.203 5.203 12 C 0.069 3.931 13 C -0.539 4.539 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.212 1.212 21 C -0.021 4.021 22 C -0.115 4.115 23 C -0.080 4.080 24 C -0.195 4.195 25 C -0.069 4.069 26 N -0.202 5.202 27 C -0.040 4.040 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.228 0.772 32 H 0.142 0.858 33 H 0.171 0.829 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.752 2.463 11.345 14.539 hybrid contribution -1.943 -1.125 -1.743 2.842 sum -10.694 1.338 9.602 14.435 Atomic orbital electron populations 1.21902 0.76507 1.04450 1.03051 1.45207 1.07015 1.05451 1.61330 1.25534 0.85279 0.93141 1.01281 1.70413 1.17103 1.10919 1.17519 1.19482 0.91429 0.90796 1.08225 1.18892 0.91445 0.89699 1.03793 1.20469 1.00707 0.89164 1.11035 1.21872 0.86733 0.99548 0.95198 1.67911 1.23655 1.15424 1.16405 1.19099 0.90427 0.84838 0.87343 1.60394 0.98200 1.57919 1.03833 1.20019 0.93771 0.94970 0.84330 1.21192 1.22874 1.19806 0.89998 0.91882 1.24894 0.95319 0.95233 0.98846 1.69951 1.29968 1.30241 1.23575 0.86522 0.78962 0.79429 0.83073 1.19805 1.20911 1.21236 1.20835 0.91092 0.97296 0.92901 1.20686 0.95459 0.96631 0.98773 1.21589 0.91901 1.00193 0.94351 1.22048 0.98836 0.97071 1.01565 1.22610 0.96656 0.93070 0.94600 1.67647 0.99144 1.34875 1.18489 1.22534 0.95043 0.90907 0.95495 0.91012 0.89503 0.90061 0.77175 0.85794 0.82933 0.94102 0.96551 0.93111 0.93012 0.91096 0.84740 0.85209 0.83446 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.19 59.85 0.67 1.28 16 2 N -0.50 -6.55 3.20 -123.13 -0.39 -6.95 16 3 C 0.23 3.30 12.51 -89.55 -1.12 2.18 16 4 N -0.44 -8.67 11.27 -11.88 -0.13 -8.81 16 5 C 0.02 0.48 7.20 -84.56 -0.61 -0.13 16 6 C 0.08 1.32 6.92 -84.08 -0.58 0.74 16 7 C -0.19 -2.84 10.08 -39.76 -0.40 -3.24 16 8 C 0.12 1.95 11.10 -17.90 -0.20 1.75 16 9 N -0.52 -10.80 9.53 -12.46 -0.12 -10.92 16 10 C 0.42 9.30 4.71 -154.84 -0.73 8.57 16 11 N -0.48 -11.01 4.46 -175.63 -0.78 -11.79 16 12 C 0.19 5.12 4.49 -4.97 -0.02 5.10 16 13 C -0.50 -14.76 8.75 -34.44 -0.30 -15.06 16 14 H 0.06 1.95 7.79 -52.48 -0.41 1.54 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 22.83 29.54 -169.99 -5.02 17.81 16 18 H -0.27 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 C 0.11 2.03 4.95 -4.98 -0.02 2.00 16 22 C -0.11 -2.08 4.93 -104.48 -0.52 -2.60 16 23 C -0.05 -0.96 8.01 -39.28 -0.31 -1.27 16 24 C -0.18 -2.76 10.11 -39.44 -0.40 -3.16 16 25 C 0.09 1.38 11.18 -17.55 -0.20 1.18 16 26 N -0.49 -8.73 10.36 -13.25 -0.14 -8.86 16 27 C 0.12 2.09 10.86 -17.55 -0.19 1.90 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.21 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.15 1.98 8.06 -52.48 -0.42 1.56 16 34 H 0.04 1.12 5.31 -51.93 -0.28 0.85 16 35 H 0.02 0.48 7.59 -51.93 -0.39 0.08 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 39 H 0.13 2.40 7.82 -52.49 -0.41 1.99 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.15 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -37.27 361.08 -10.70 -47.97 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.26 Total: 1.62 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -5.03 Total: 0.85 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -0.83 Total: -73.69 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.27 -10.70 -47.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.020 kcal (2) G-P(sol) polarization free energy of solvation -37.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds