Wall clock time and date at job start Tue Mar 31 2020 13:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36265 * 126.34500 * 2 1 4 4 N 1.30136 * 110.02357 * 180.02562 * 3 2 1 5 5 C 1.35568 * 109.58030 * 0.02562 * 4 3 2 6 6 C 1.37425 * 126.33814 * 180.02562 * 2 1 3 7 7 C 1.39301 * 135.20865 * 359.97438 * 6 2 1 8 8 C 1.36658 * 119.07589 * 180.02562 * 7 6 2 9 9 N 1.32357 * 121.50306 * 359.67727 * 8 7 6 10 10 C 1.32241 * 122.25961 * 0.64208 * 9 8 7 11 11 N 1.38869 * 120.01771 * 179.66597 * 10 9 8 12 12 C 1.46898 * 111.00094 * 59.48379 * 11 10 9 13 13 C 1.50705 * 109.46928 * 68.91798 * 12 11 10 14 14 H 1.08006 * 119.99974 * 4.62155 * 13 12 11 15 15 C 1.37878 * 120.00036 * 184.61966 * 13 12 11 16 16 N 1.31513 * 120.00153 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99838 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47139 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47245 * 119.99825 * 17 15 13 20 20 H 1.48506 * 109.46864 * 240.00016 * 17 15 13 21 21 C 1.46900 * 110.99824 * 295.53873 * 11 10 9 22 22 C 1.50699 * 109.47018 * 189.99828 * 21 11 10 23 23 C 1.38668 * 120.41845 * 270.25485 * 22 21 11 24 24 C 1.38632 * 118.42102 * 180.22453 * 23 22 21 25 25 C 1.38227 * 119.15995 * 359.47662 * 24 23 22 26 26 N 1.31854 * 120.76512 * 0.30463 * 25 24 23 27 27 C 1.31887 * 121.72505 * 359.97438 * 26 25 24 28 28 H 1.09006 * 109.46709 * 269.99798 * 1 2 3 29 29 H 1.09000 * 109.46955 * 29.98749 * 1 2 3 30 30 H 1.08994 * 109.47816 * 149.99811 * 1 2 3 31 31 H 1.08000 * 124.98942 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.46155 * 359.97338 * 7 6 2 33 33 H 1.08004 * 119.24434 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47354 * 188.91830 * 12 11 10 35 35 H 1.09001 * 109.47827 * 308.92350 * 12 11 10 36 36 H 0.96996 * 119.99907 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.47596 * 69.99635 * 21 11 10 38 38 H 1.09000 * 109.46764 * 309.99353 * 21 11 10 39 39 H 1.07997 * 120.79076 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.42265 * 179.75777 * 24 23 22 41 41 H 1.08000 * 119.61667 * 180.27803 * 25 24 23 42 42 H 1.07996 * 119.62103 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2726 1.0976 0.0000 4 7 3.5215 0.7318 -0.0005 5 6 3.5986 -0.6216 -0.0015 6 6 2.2793 -1.1070 -0.0005 7 6 2.0746 -2.4849 -0.0007 8 6 3.1583 -3.3174 -0.0007 9 7 4.3942 -2.8437 -0.0069 10 6 4.6532 -1.5470 -0.0009 11 7 5.9684 -1.1012 -0.0008 12 6 6.6886 -1.5858 -1.1859 13 6 6.1448 -0.9070 -2.4166 14 1 5.3969 -0.1338 -2.3209 15 6 6.6023 -1.2730 -3.6647 16 7 7.5134 -2.2141 -3.7813 17 14 5.9287 -0.4310 -5.1902 18 1 4.9220 0.5851 -4.7910 19 1 7.0388 0.2317 -5.9207 20 1 5.2894 -1.4409 -6.0715 21 6 6.6588 -1.4983 1.2336 22 6 7.9906 -0.7975 1.3119 23 6 9.1235 -1.3795 0.7636 24 6 10.3282 -0.7007 0.8634 25 6 10.3577 0.5300 1.4921 26 7 9.2593 1.0553 1.9982 27 6 8.0973 0.4356 1.9265 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8899 -0.5138 31 1 1.9269 2.1208 0.0004 32 1 1.0733 -2.8896 0.0000 33 1 3.0027 -4.3861 -0.0004 34 1 7.7498 -1.3584 -1.0844 35 1 6.5551 -2.6638 -1.2767 36 1 7.8349 -2.4718 -4.6594 37 1 6.8154 -2.5770 1.2314 38 1 6.0511 -1.2211 2.0949 39 1 9.0695 -2.3406 0.2740 40 1 11.2313 -1.1259 0.4512 41 1 11.2913 1.0672 1.5700 42 1 7.2189 0.8974 2.3523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164004307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:43 Heat of formation + Delta-G solvation = 123.307235 kcal Electronic energy + Delta-G solvation = -26988.694246 eV Core-core repulsion = 23355.415326 eV Total energy + Delta-G solvation = -3633.278920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.21602 -41.18426 -39.99010 -37.69853 -35.09673 -34.81472 -33.55459 -32.61248 -31.80138 -30.33050 -29.20291 -27.93799 -26.57027 -25.10455 -24.34235 -23.88636 -23.55131 -22.42623 -20.96762 -18.88043 -18.48845 -18.16825 -17.89431 -17.30751 -17.05491 -16.93812 -16.55132 -16.28619 -16.11638 -15.68033 -15.22578 -14.62727 -14.56724 -14.51781 -14.17765 -14.06036 -14.00923 -13.75113 -13.69539 -13.37602 -13.22216 -13.12586 -12.71336 -12.64428 -12.34856 -12.04923 -11.45124 -11.28101 -11.03192 -10.75926 -10.64631 -10.51595 -10.36923 -9.93045 -9.80872 -9.30422 -9.00100 -8.22332 -6.28725 -0.12527 0.23639 0.38644 0.52598 1.29189 1.30834 1.43916 1.71498 1.93099 2.34506 2.76631 2.91058 3.10126 3.19561 3.38605 3.58661 3.73261 3.79421 3.87563 3.95503 4.01432 4.11693 4.14897 4.16044 4.34792 4.47362 4.48577 4.53695 4.59037 4.74734 4.75417 4.85830 4.91389 5.11792 5.14357 5.24339 5.24807 5.39613 5.42575 5.61004 5.67052 5.83078 5.99778 6.22134 6.36274 6.55899 6.84032 6.96136 7.05892 7.22856 7.37808 8.88606 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.005496 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.453749 B = 5092.987977 C = 6718.581057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.489 5.489 3 C 0.257 3.743 4 N -0.510 5.510 5 C -0.008 4.008 6 C 0.068 3.932 7 C -0.165 4.165 8 C 0.092 3.908 9 N -0.549 5.549 10 C 0.375 3.625 11 N -0.485 5.485 12 C 0.218 3.782 13 C -0.513 4.513 14 H 0.043 0.957 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.271 1.271 20 H -0.275 1.275 21 C 0.114 3.886 22 C -0.129 4.129 23 C -0.072 4.072 24 C -0.171 4.171 25 C 0.090 3.910 26 N -0.506 5.506 27 C 0.110 3.890 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.026 0.974 35 H -0.019 1.019 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.188 0.812 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.546 2.591 10.905 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.180 5.180 3 C -0.029 4.029 4 N -0.228 5.228 5 C -0.130 4.130 6 C -0.050 4.050 7 C -0.188 4.188 8 C -0.058 4.058 9 N -0.264 5.264 10 C 0.137 3.863 11 N -0.208 5.208 12 C 0.093 3.907 13 C -0.552 4.552 14 H 0.061 0.939 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.197 1.197 20 H -0.201 1.201 21 C -0.013 4.013 22 C -0.131 4.131 23 C -0.099 4.099 24 C -0.191 4.191 25 C -0.067 4.067 26 N -0.215 5.215 27 C -0.047 4.047 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.109 0.891 31 H 0.277 0.723 32 H 0.189 0.811 33 H 0.202 0.798 34 H 0.043 0.957 35 H -0.001 1.001 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.178 0.822 41 H 0.205 0.795 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.213 3.713 11.168 16.256 hybrid contribution -1.342 -1.481 -1.613 2.568 sum -12.555 2.232 9.555 15.934 Atomic orbital electron populations 1.22379 0.72604 1.06475 1.05164 1.45550 1.09032 1.03778 1.59593 1.26487 0.84125 0.95113 0.97169 1.70332 1.20449 1.10893 1.21155 1.19668 0.92752 0.91551 1.09009 1.19159 0.90869 0.91257 1.03739 1.20897 1.02293 0.88214 1.07347 1.22473 0.86033 1.01438 0.95897 1.67775 1.26255 1.15384 1.16970 1.19155 0.90118 0.85900 0.91109 1.60221 0.99080 1.58122 1.03393 1.19480 0.93198 0.92385 0.85630 1.21319 1.22621 1.19599 0.91631 0.93898 1.25700 0.95565 0.95867 1.01769 1.70055 1.30831 1.31227 1.24506 0.85531 0.78500 0.78466 0.79347 1.20061 1.19663 1.20087 1.20782 0.91649 0.96763 0.92095 1.20686 0.95213 0.97285 0.99916 1.21681 0.93023 1.00290 0.94911 1.22386 0.98942 0.96951 1.00795 1.23265 0.97410 0.92990 0.93069 1.67704 0.99535 1.35153 1.19125 1.22632 0.95707 0.90676 0.95665 0.88788 0.86584 0.89074 0.72284 0.81054 0.79838 0.95660 1.00150 0.92710 0.94056 0.90020 0.85922 0.82237 0.79546 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 11.19 127.77 1.43 2.16 16 2 N -0.49 -11.39 3.20 -543.47 -1.74 -13.13 16 3 C 0.26 6.71 12.51 179.97 2.25 8.96 16 4 N -0.51 -20.19 11.27 -191.50 -2.16 -22.35 16 5 C -0.01 -0.32 7.20 39.64 0.29 -0.04 16 6 C 0.07 2.21 6.92 39.09 0.27 2.48 16 7 C -0.16 -4.60 10.08 22.16 0.22 -4.37 16 8 C 0.09 3.06 11.10 84.24 0.93 3.99 16 9 N -0.55 -24.03 9.53 -193.33 -1.84 -25.88 16 10 C 0.37 17.49 4.71 133.44 0.63 18.12 16 11 N -0.49 -23.86 4.46 -709.58 -3.16 -27.03 16 12 C 0.22 12.43 4.49 85.56 0.38 12.82 16 13 C -0.51 -31.74 8.75 25.60 0.22 -31.52 16 14 H 0.04 2.78 7.79 -2.91 -0.02 2.75 16 15 C 0.01 0.55 5.46 84.66 0.46 1.02 16 16 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 17 Si 0.96 47.60 29.54 68.60 2.03 49.62 16 18 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 C 0.11 4.74 4.95 85.56 0.42 5.16 16 22 C -0.13 -5.04 4.93 -19.77 -0.10 -5.14 16 23 C -0.07 -2.73 8.01 22.47 0.18 -2.55 16 24 C -0.17 -5.36 10.11 22.36 0.23 -5.13 16 25 C 0.09 2.71 11.18 84.69 0.95 3.66 16 26 N -0.51 -17.87 10.36 -195.84 -2.03 -19.90 16 27 C 0.11 4.05 10.86 84.67 0.92 4.97 16 28 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.26 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.18 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.03 1.50 5.31 -2.39 -0.01 1.49 16 35 H -0.02 -1.21 7.59 -2.39 -0.02 -1.23 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.08 3.10 8.01 -2.39 -0.02 3.08 16 39 H 0.12 4.80 7.82 -2.91 -0.02 4.78 16 40 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 41 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.16 5.40 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -87.51 361.08 2.11 -85.40 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.04 Total: 15.92 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 9.69 Total: 14.60 kcal Atomic # 7 Polarization: -154.89 SS G_CDS: -10.65 Total: -165.53 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -87.51 2.11 -85.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.703 kcal (2) G-P(sol) polarization free energy of solvation -87.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds