Wall clock time and date at job start Tue Mar 31 2020 13:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37107 * 124.98801 * 2 1 4 4 C 1.34295 * 109.80774 * 179.97438 * 3 2 1 5 5 C 1.46165 * 106.81345 * 359.97438 * 4 3 2 6 6 C 1.36777 * 124.98914 * 179.97438 * 2 1 3 7 7 N 1.33198 * 134.29889 * 359.97438 * 6 2 1 8 8 C 1.31543 * 120.71304 * 180.02562 * 7 6 2 9 9 N 1.32081 * 122.71839 * 359.73736 * 8 7 6 10 10 C 1.33000 * 121.02388 * 0.54932 * 9 8 7 11 11 N 1.38330 * 120.83267 * 179.73599 * 10 9 8 12 12 C 1.46902 * 110.99892 * 235.76352 * 11 10 9 13 13 C 1.50694 * 109.46800 * 193.95499 * 12 11 10 14 14 H 1.07993 * 120.00672 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99566 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00033 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47137 * 90.00004 * 17 15 13 19 19 H 1.48503 * 109.46824 * 209.99822 * 17 15 13 20 20 H 1.48501 * 109.47090 * 329.99874 * 17 15 13 21 21 C 1.46904 * 111.00227 * 359.71984 * 11 10 9 22 22 C 1.50695 * 109.47190 * 170.00126 * 21 11 10 23 23 C 1.38678 * 120.41675 * 270.25239 * 22 21 11 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46654 * 89.97896 * 1 2 3 29 29 H 1.08990 * 109.47274 * 209.98071 * 1 2 3 30 30 H 1.08998 * 109.47039 * 329.98596 * 1 2 3 31 31 H 1.08004 * 125.09389 * 359.97438 * 3 2 1 32 32 H 1.08002 * 126.59582 * 180.02562 * 4 3 2 33 33 H 1.08002 * 118.64590 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46805 * 313.95416 * 12 11 10 35 35 H 1.08999 * 109.46850 * 73.95667 * 12 11 10 36 36 H 0.97000 * 120.00369 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.46737 * 49.99945 * 21 11 10 38 38 H 1.08996 * 109.46745 * 289.99864 * 21 11 10 39 39 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 40 40 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 41 41 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.1233 0.0000 4 6 3.5473 0.7716 0.0006 5 6 3.5889 -0.6894 0.0016 6 6 2.2493 -1.1206 0.0005 7 7 2.0017 -2.4293 0.0015 8 6 2.9881 -3.2997 0.0023 9 7 4.2586 -2.9388 -0.0030 10 6 4.6066 -1.6551 0.0015 11 7 5.9386 -1.2817 0.0014 12 6 6.2384 -0.4009 1.1382 13 6 7.5783 0.2551 0.9255 14 1 8.1498 0.0398 0.0349 15 6 8.0741 1.1312 1.8677 16 7 9.2433 1.7042 1.6820 17 14 7.0854 1.5043 3.4080 18 1 7.4497 0.5391 4.4760 19 1 7.3843 2.8851 3.8657 20 1 5.6361 1.3855 3.1067 21 6 6.8158 -2.4600 0.0026 22 6 8.2382 -2.0277 -0.2442 23 6 8.7329 -1.9463 -1.5372 24 6 10.0489 -1.5488 -1.7162 25 6 10.8171 -1.2440 -0.6082 26 7 10.3115 -1.3274 0.6068 27 6 9.0641 -1.7018 0.8146 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5140 31 1 1.8833 2.1387 -0.0004 32 1 4.3957 1.4399 0.0011 33 1 2.7492 -4.3529 0.0027 34 1 5.4672 0.3653 1.2174 35 1 6.2630 -0.9882 2.0561 36 1 9.5920 2.3208 2.3446 37 1 6.5030 -3.1466 -0.7841 38 1 6.7506 -2.9604 0.9687 39 1 8.1092 -2.1910 -2.3841 40 1 10.4687 -1.4786 -2.7087 41 1 11.8431 -0.9332 -0.7391 42 1 8.6852 -1.7587 1.8243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164004520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:46 Heat of formation + Delta-G solvation = 144.897890 kcal Electronic energy + Delta-G solvation = -27411.596055 eV Core-core repulsion = 23779.253377 eV Total energy + Delta-G solvation = -3632.342679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.88831 -41.13291 -39.95131 -38.36843 -34.85255 -34.23724 -33.33558 -32.98895 -32.14028 -30.52488 -29.59811 -27.83718 -26.47212 -24.96131 -24.11950 -23.80109 -23.32144 -22.06183 -21.12454 -19.24709 -18.99322 -18.02557 -17.64713 -17.29147 -17.04110 -16.78270 -16.48213 -16.21336 -15.51995 -15.36798 -15.07174 -14.90056 -14.76411 -14.55478 -14.29524 -14.04124 -13.93235 -13.80479 -13.59138 -13.26086 -13.12393 -12.89737 -12.77183 -12.51489 -12.17906 -12.07071 -11.80388 -11.67341 -11.38039 -10.75074 -10.37892 -10.17068 -10.09930 -9.92323 -9.66580 -9.27864 -8.71383 -8.15804 -6.12428 -0.09048 0.38729 0.55086 0.79790 1.32651 1.37201 1.42923 1.56548 1.67541 2.35580 2.57694 2.96363 3.13562 3.30538 3.33688 3.49370 3.82808 3.89857 3.95686 4.07775 4.11774 4.16616 4.29163 4.35846 4.45317 4.46023 4.62600 4.65517 4.71810 4.73355 4.76372 4.83297 4.88928 5.05215 5.18361 5.27749 5.36226 5.46776 5.48717 5.57623 5.72070 5.91001 6.01579 6.14127 6.20562 6.40102 6.53404 6.85215 7.31657 7.38273 7.53149 8.92913 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.005054 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.268468 B = 5538.702890 C = 6891.299595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.466 5.466 3 C 0.061 3.939 4 C -0.189 4.189 5 C -0.250 4.250 6 C 0.309 3.691 7 N -0.565 5.565 8 C 0.331 3.669 9 N -0.597 5.597 10 C 0.398 3.602 11 N -0.459 5.459 12 C 0.178 3.822 13 C -0.509 4.509 14 H 0.077 0.923 15 C 0.042 3.958 16 N -0.901 5.901 17 Si 0.909 3.091 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.130 3.870 22 C -0.137 4.137 23 C -0.072 4.072 24 C -0.197 4.197 25 C 0.086 3.914 26 N -0.516 5.516 27 C 0.183 3.817 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.224 0.776 32 H 0.144 0.856 33 H 0.232 0.768 34 H 0.048 0.952 35 H -0.012 1.012 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 -4.617 -4.888 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.152 5.152 3 C -0.062 4.062 4 C -0.215 4.215 5 C -0.263 4.263 6 C 0.070 3.930 7 N -0.289 5.289 8 C 0.040 3.960 9 N -0.322 5.322 10 C 0.153 3.847 11 N -0.173 5.173 12 C 0.053 3.947 13 C -0.547 4.547 14 H 0.095 0.905 15 C -0.161 4.161 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.178 1.178 21 C 0.004 3.996 22 C -0.140 4.140 23 C -0.098 4.098 24 C -0.217 4.217 25 C -0.070 4.070 26 N -0.225 5.225 27 C 0.025 3.975 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.240 0.760 32 H 0.162 0.838 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.006 0.994 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.390 -4.845 -4.519 15.842 hybrid contribution -0.348 0.882 0.796 1.238 sum -14.738 -3.963 -3.723 15.709 Atomic orbital electron populations 1.22270 0.73786 1.05767 1.04476 1.43944 1.07912 1.02210 1.61183 1.22507 0.88889 0.92009 1.02820 1.21803 0.97614 0.91723 1.10344 1.20279 0.93886 0.96540 1.15554 1.18510 0.87869 0.88220 0.98374 1.67386 1.38491 0.99224 1.23773 1.25097 0.81580 1.00140 0.89155 1.68511 1.22559 1.16438 1.24730 1.19989 0.89892 0.88137 0.86655 1.58563 0.99262 1.17772 1.41718 1.20290 0.98176 0.91400 0.84786 1.21321 1.01496 1.24404 1.07475 0.90476 1.25326 0.95338 0.95449 0.99963 1.69995 1.18569 1.29264 1.36002 0.86298 0.80859 0.77782 0.81589 1.20420 1.20932 1.17808 1.20647 0.87504 0.89557 1.01930 1.20449 0.95870 1.03014 0.94644 1.21421 0.95550 0.96611 0.96195 1.22106 0.95084 1.03810 1.00673 1.22877 1.00514 0.95466 0.88094 1.67553 1.15152 1.13777 1.26021 1.21913 0.88412 0.89009 0.98139 0.89856 0.89985 0.86640 0.75986 0.83805 0.75231 0.93405 0.99384 0.92835 0.88443 0.93348 0.84305 0.82950 0.82568 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.07 127.77 1.41 2.50 16 2 N -0.47 -11.43 3.16 -545.11 -1.72 -13.15 16 3 C 0.06 1.45 11.30 82.97 0.94 2.39 16 4 C -0.19 -6.25 9.62 23.43 0.23 -6.02 16 5 C -0.25 -9.27 5.82 -20.11 -0.12 -9.38 16 6 C 0.31 10.02 7.95 133.96 1.06 11.08 16 7 N -0.57 -17.53 10.47 -197.87 -2.07 -19.60 16 8 C 0.33 9.72 12.23 180.87 2.21 11.93 16 9 N -0.60 -20.82 8.78 -197.17 -1.73 -22.55 16 10 C 0.40 15.57 6.42 133.40 0.86 16.42 16 11 N -0.46 -19.20 4.59 -709.48 -3.25 -22.46 16 12 C 0.18 8.19 3.56 85.55 0.30 8.50 16 13 C -0.51 -26.42 5.93 25.60 0.15 -26.27 16 14 H 0.08 4.38 5.04 -2.91 -0.01 4.36 16 15 C 0.04 2.24 5.45 84.66 0.46 2.70 16 16 N -0.90 -52.11 13.96 21.45 0.30 -51.81 16 17 Si 0.91 42.06 27.47 68.60 1.88 43.95 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 21 C 0.13 5.00 4.42 85.55 0.38 5.38 16 22 C -0.14 -5.57 3.48 -19.77 -0.07 -5.64 16 23 C -0.07 -2.62 9.65 22.47 0.22 -2.40 16 24 C -0.20 -6.84 10.11 22.36 0.23 -6.61 16 25 C 0.09 3.42 11.18 84.69 0.95 4.36 16 26 N -0.52 -23.96 10.36 -195.83 -2.03 -25.99 16 27 C 0.18 8.32 7.00 84.67 0.59 8.91 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.12 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.22 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.14 5.13 7.24 -2.91 -0.02 5.10 16 33 H 0.23 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.05 2.23 4.05 -2.39 -0.01 2.22 16 35 H -0.01 -0.55 7.41 -2.39 -0.02 -0.57 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.10 3.43 7.50 -2.39 -0.02 3.41 16 38 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 39 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.16 5.30 8.06 -2.91 -0.02 5.28 16 42 H 0.12 5.71 7.67 -2.91 -0.02 5.69 16 Total: -1.00 -70.86 344.62 2.17 -68.69 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 1.00 Total: 25.08 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 9.80 Total: 17.85 kcal Atomic # 7 Polarization: -145.06 SS G_CDS: -10.51 Total: -155.57 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.95 kcal Total: -70.86 2.17 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.587 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds