Wall clock time and date at job start Tue Mar 31 2020 14:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 108.73997 * 2 1 4 4 N 1.46909 * 109.46896 * 61.69713 * 3 2 1 5 5 C 1.50462 * 108.77097 * 241.69701 * 2 1 3 6 6 C 1.54513 * 108.85187 * 331.35731 * 5 2 1 7 7 C 1.45864 * 111.59076 * 282.80484 * 6 5 2 8 8 N 1.47804 * 112.91615 * 61.32675 * 7 6 5 9 9 C 1.38411 * 110.99879 * 153.87169 * 8 7 6 10 10 N 1.32751 * 119.43176 * 236.06951 * 9 8 7 11 11 C 1.31469 * 121.73764 * 179.97438 * 10 9 8 12 12 C 1.40789 * 120.39304 * 0.02562 * 11 10 9 13 13 C 1.41200 * 120.57103 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99299 * 330.65142 * 13 12 11 15 15 C 1.39859 * 120.00135 * 150.65131 * 13 12 11 16 16 N 1.30902 * 119.99989 * 347.11498 * 15 13 12 17 17 Si 1.86800 * 119.99801 * 167.11515 * 15 13 12 18 18 H 1.48498 * 109.47163 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47065 * 119.99864 * 17 15 13 20 20 H 1.48496 * 109.47033 * 239.99738 * 17 15 13 21 21 C 1.41286 * 118.86588 * 359.97438 * 12 11 10 22 22 C 1.36662 * 118.40469 * 0.02562 * 21 12 11 23 23 Cl 1.73597 * 120.26731 * 180.27327 * 22 21 12 24 24 C 1.44270 * 109.46491 * 276.74196 * 8 7 6 25 25 C 1.54066 * 111.98664 * 96.43554 * 24 8 7 26 26 H 1.08999 * 109.47351 * 185.55985 * 1 2 3 27 27 H 1.08999 * 109.47295 * 305.56142 * 1 2 3 28 28 H 1.09000 * 109.47439 * 65.55742 * 1 2 3 29 29 H 1.09001 * 109.47296 * 181.69552 * 3 2 1 30 30 H 1.08995 * 109.47271 * 301.70096 * 3 2 1 31 31 H 1.00903 * 110.99784 * 179.97438 * 4 3 2 32 32 H 1.00904 * 110.99872 * 303.95298 * 4 3 2 33 33 H 1.08999 * 109.57666 * 211.54449 * 5 2 1 34 34 H 1.08998 * 109.57540 * 91.16546 * 5 2 1 35 35 H 1.08995 * 109.05845 * 162.26509 * 6 5 2 36 36 H 1.08997 * 108.99874 * 43.31003 * 6 5 2 37 37 H 1.09001 * 108.79346 * 300.44218 * 7 6 5 38 38 H 1.08995 * 108.70832 * 182.14916 * 7 6 5 39 39 H 1.07998 * 119.80729 * 179.97438 * 11 10 9 40 40 H 0.97011 * 119.99522 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.80186 * 179.97438 * 21 12 11 42 42 H 1.09002 * 108.98265 * 217.08453 * 24 8 7 43 43 H 1.09002 * 108.97879 * 335.78831 * 24 8 7 44 44 H 1.08992 * 108.92307 * 198.19274 * 25 24 8 45 45 H 1.09001 * 108.84498 * 79.58556 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0215 1.4488 0.0000 4 7 1.5569 2.1235 1.2195 5 6 2.0141 -0.6754 -1.2543 6 6 0.9597 -1.7125 -1.7017 7 6 1.0215 -2.9243 -0.8922 8 7 0.7486 -2.6749 0.5389 9 6 0.2460 -3.8089 1.1530 10 7 -0.9206 -3.7467 1.7834 11 6 -1.4403 -4.7959 2.3814 12 6 -0.7637 -6.0305 2.3694 13 6 -1.3186 -7.1598 3.0100 14 1 -1.9598 -7.0321 3.8697 15 6 -1.0381 -8.4436 2.5313 16 7 -0.4787 -8.5968 1.3577 17 14 -1.4616 -9.9397 3.5666 18 1 -2.0819 -9.4996 4.8420 19 1 -2.4162 -10.8014 2.8239 20 1 -0.2240 -10.7075 3.8564 21 6 0.4797 -6.1204 1.7045 22 6 0.9755 -5.0002 1.0988 23 17 2.4955 -5.0579 0.2621 24 6 1.9570 -2.2279 1.1880 25 6 2.0241 -0.6920 1.2875 26 1 -0.3634 -1.0228 0.0996 27 1 -0.3634 0.5977 0.8360 28 1 -0.3634 0.4252 -0.9355 29 1 3.1110 1.4629 -0.0304 30 1 1.6269 1.9664 -0.8743 31 1 1.8692 3.0827 1.2434 32 1 0.5529 2.0676 1.3036 33 1 2.9603 -1.1789 -1.0560 34 1 2.1514 0.0678 -2.0396 35 1 1.1367 -1.9724 -2.7453 36 1 -0.0330 -1.2722 -1.6082 37 1 2.0154 -3.3611 -0.9892 38 1 0.2874 -3.6355 -1.2708 39 1 -2.3915 -4.7100 2.8856 40 1 -0.2845 -9.4873 1.0256 41 1 1.0257 -7.0519 1.6762 42 1 1.9972 -2.6503 2.1920 43 1 2.8168 -2.5843 0.6206 44 1 3.0558 -0.3946 1.4748 45 1 1.4054 -0.3660 2.1236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164250533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:56 Heat of formation + Delta-G solvation = 40.387563 kcal Electronic energy + Delta-G solvation = -26362.687047 eV Core-core repulsion = 22826.919954 eV Total energy + Delta-G solvation = -3535.767093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21322 -38.47491 -36.17018 -35.55545 -34.16112 -33.01750 -31.52744 -30.70649 -29.57657 -27.69004 -26.57862 -25.01754 -24.63059 -22.25356 -21.99308 -21.44562 -19.89404 -17.89527 -17.63691 -16.78290 -16.05890 -15.74906 -15.32981 -15.08892 -14.61703 -14.36993 -14.09170 -13.86362 -13.65058 -13.17188 -13.10727 -12.72582 -12.54081 -12.46234 -12.06884 -11.88671 -11.63695 -11.47326 -11.36159 -11.11330 -11.00381 -10.93268 -10.76177 -10.55680 -10.49637 -10.22909 -10.15736 -10.01042 -9.83000 -9.63755 -9.54699 -8.64504 -8.58725 -8.26665 -7.60629 -7.42205 -6.99036 -4.68500 2.25384 2.68465 2.94682 2.98451 3.00084 3.03472 3.73531 4.34202 4.37395 4.62442 4.91426 5.07203 5.23377 5.30930 5.37503 5.59944 5.62770 5.64367 5.79745 5.82542 5.90360 5.99239 6.05664 6.13339 6.19671 6.25386 6.28335 6.36627 6.44803 6.50089 6.55553 6.56816 6.65286 6.73406 6.81834 6.83213 6.90046 7.05978 7.11961 7.23882 7.45485 7.49818 7.63101 7.72078 8.07686 8.22661 8.45988 8.48045 9.45999 9.89858 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.003558 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.208302 B = 7868.278960 C = 8357.220503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.045 4.045 3 C 0.069 3.931 4 N -0.849 5.849 5 C -0.104 4.104 6 C -0.124 4.124 7 C 0.051 3.949 8 N -0.456 5.456 9 C 0.162 3.838 10 N -0.426 5.426 11 C -0.010 4.010 12 C 0.073 3.927 13 C -0.442 4.442 14 H 0.089 0.911 15 C 0.071 3.929 16 N -0.786 5.786 17 Si 0.917 3.083 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.119 4.119 22 C -0.069 4.069 23 Cl -0.108 7.108 24 C 0.063 3.937 25 C -0.081 4.081 26 H 0.113 0.887 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.333 0.667 32 H 0.342 0.658 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.137 0.863 40 H 0.286 0.714 41 H 0.133 0.867 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.052 0.948 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 10.378 -3.681 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.045 4.045 3 C -0.062 4.062 4 N -0.379 5.379 5 C -0.142 4.142 6 C -0.162 4.162 7 C -0.076 4.076 8 N -0.176 5.176 9 C -0.068 4.068 10 N -0.134 5.134 11 C -0.174 4.174 12 C 0.068 3.932 13 C -0.471 4.471 14 H 0.107 0.893 15 C -0.148 4.148 16 N -0.411 5.411 17 Si 0.741 3.259 18 H -0.181 1.181 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.145 4.145 22 C -0.100 4.100 23 Cl -0.080 7.080 24 C -0.066 4.066 25 C -0.119 4.119 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.155 0.845 40 H 0.097 0.903 41 H 0.151 0.849 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.269 10.818 -3.489 12.141 hybrid contribution 0.544 -1.626 -0.515 1.791 sum 4.812 9.191 -4.004 11.121 Atomic orbital electron populations 1.22452 0.94403 1.05971 0.98593 1.20151 0.96714 0.92640 0.94997 1.22030 0.99445 0.94835 0.89868 1.58756 1.18324 1.20277 1.40571 1.21371 0.98723 0.97767 0.96351 1.20829 1.01012 0.96364 0.98007 1.21246 1.01442 0.97105 0.87836 1.57682 1.28320 1.30434 1.01212 1.18434 0.94290 0.87318 1.06783 1.66806 1.09048 1.31603 1.05942 1.22580 1.00160 0.89279 1.05359 1.18522 0.90166 0.93853 0.90654 1.19589 1.25435 0.89740 1.12339 0.89276 1.26023 0.92924 1.01321 0.94543 1.69798 1.30244 1.25870 1.15147 0.86101 0.79190 0.79932 0.80713 1.18080 1.19690 1.19518 1.21312 0.96006 0.96646 1.00569 1.22415 0.87755 0.97926 1.01926 1.98246 1.33746 1.98323 1.77685 1.21991 0.90505 0.95467 0.98612 1.21814 0.99867 0.93387 0.96850 0.86863 0.94153 0.94822 0.91807 0.96253 0.85601 0.84352 0.92299 0.92708 0.92527 0.90040 0.92891 0.92006 0.84547 0.90288 0.84889 0.92441 0.93985 0.92941 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 6.54 37.16 0.24 -1.96 16 2 C -0.04 -0.58 0.56 -155.10 -0.09 -0.66 16 3 C 0.07 0.77 5.36 -3.82 -0.02 0.75 16 4 N -0.85 -9.02 8.99 -10.37 -0.09 -9.11 16 5 C -0.10 -1.31 4.95 -27.20 -0.13 -1.45 16 6 C -0.12 -1.74 5.22 -29.31 -0.15 -1.89 16 7 C 0.05 0.86 3.75 -6.70 -0.03 0.84 16 8 N -0.46 -8.48 2.24 -177.74 -0.40 -8.87 16 9 C 0.16 3.58 5.21 -155.05 -0.81 2.77 16 10 N -0.43 -10.00 10.38 -11.75 -0.12 -10.12 16 11 C -0.01 -0.25 10.97 -16.74 -0.18 -0.43 16 12 C 0.07 1.80 5.54 -106.65 -0.59 1.21 16 13 C -0.44 -10.64 9.06 -37.85 -0.34 -10.98 16 14 H 0.09 2.03 7.88 -52.48 -0.41 1.61 16 15 C 0.07 1.64 5.23 -17.34 -0.09 1.55 16 16 N -0.79 -18.91 11.03 55.54 0.61 -18.30 16 17 Si 0.92 17.24 29.58 -169.99 -5.03 12.21 16 18 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 21 C -0.12 -2.91 8.48 -38.99 -0.33 -3.24 16 22 C -0.07 -1.54 5.88 -39.57 -0.23 -1.77 16 23 Cl -0.11 -2.09 23.34 -51.86 -1.21 -3.30 16 24 C 0.06 1.08 4.08 -4.67 -0.02 1.06 16 25 C -0.08 -1.20 4.51 -25.50 -0.12 -1.31 16 26 H 0.11 1.93 4.45 -51.93 -0.23 1.70 16 27 H 0.04 0.55 6.27 -51.93 -0.33 0.23 16 28 H 0.03 0.43 7.47 -51.93 -0.39 0.04 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.20 8.07 -51.93 -0.42 -0.21 16 31 H 0.33 2.84 9.08 -39.29 -0.36 2.48 16 32 H 0.34 3.62 6.92 -39.29 -0.27 3.35 16 33 H 0.06 0.77 7.15 -51.93 -0.37 0.40 16 34 H 0.05 0.61 7.68 -51.93 -0.40 0.21 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.17 5.00 -51.93 -0.26 0.91 16 37 H 0.05 0.90 4.72 -51.93 -0.25 0.66 16 38 H 0.06 1.17 7.78 -51.93 -0.40 0.77 16 39 H 0.14 2.94 8.06 -52.49 -0.42 2.52 16 40 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 41 H 0.13 3.37 6.44 -52.48 -0.34 3.03 16 42 H 0.06 1.10 7.54 -51.93 -0.39 0.71 16 43 H 0.04 0.71 5.40 -51.93 -0.28 0.43 16 44 H 0.05 0.74 7.98 -51.93 -0.41 0.32 16 45 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -24.93 342.59 -10.29 -35.21 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.32 Total: 12.63 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.89 Total: -15.52 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.00 Total: -46.40 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -1.21 Total: -3.30 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -24.93 -10.29 -35.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164250533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.602 kcal (2) G-P(sol) polarization free energy of solvation -24.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds