Wall clock time and date at job start Tue Mar 31 2020 14:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 108.73997 * 2 1 4 4 N 1.46909 * 109.46896 * 61.69713 * 3 2 1 5 5 C 1.50462 * 108.77097 * 241.69701 * 2 1 3 6 6 C 1.54513 * 108.85187 * 331.35731 * 5 2 1 7 7 C 1.45864 * 111.59076 * 282.80484 * 6 5 2 8 8 N 1.47804 * 112.91615 * 61.32675 * 7 6 5 9 9 C 1.38411 * 110.99879 * 153.87169 * 8 7 6 10 10 N 1.32751 * 119.43176 * 236.06951 * 9 8 7 11 11 C 1.31469 * 121.73764 * 179.97438 * 10 9 8 12 12 C 1.40789 * 120.39304 * 0.02562 * 11 10 9 13 13 C 1.41200 * 120.57103 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99299 * 330.65142 * 13 12 11 15 15 C 1.39859 * 120.00135 * 150.65131 * 13 12 11 16 16 N 1.30902 * 119.99989 * 347.11498 * 15 13 12 17 17 Si 1.86800 * 119.99801 * 167.11515 * 15 13 12 18 18 H 1.48498 * 109.47163 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47065 * 119.99864 * 17 15 13 20 20 H 1.48496 * 109.47033 * 239.99738 * 17 15 13 21 21 C 1.41286 * 118.86588 * 359.97438 * 12 11 10 22 22 C 1.36662 * 118.40469 * 0.02562 * 21 12 11 23 23 Cl 1.73597 * 120.26731 * 180.27327 * 22 21 12 24 24 C 1.44270 * 109.46491 * 276.74196 * 8 7 6 25 25 C 1.54066 * 111.98664 * 96.43554 * 24 8 7 26 26 H 1.08999 * 109.47351 * 185.55985 * 1 2 3 27 27 H 1.08999 * 109.47295 * 305.56142 * 1 2 3 28 28 H 1.09000 * 109.47439 * 65.55742 * 1 2 3 29 29 H 1.09001 * 109.47296 * 181.69552 * 3 2 1 30 30 H 1.08995 * 109.47271 * 301.70096 * 3 2 1 31 31 H 1.00903 * 110.99784 * 179.97438 * 4 3 2 32 32 H 1.00904 * 110.99872 * 303.95298 * 4 3 2 33 33 H 1.08999 * 109.57666 * 211.54449 * 5 2 1 34 34 H 1.08998 * 109.57540 * 91.16546 * 5 2 1 35 35 H 1.08995 * 109.05845 * 162.26509 * 6 5 2 36 36 H 1.08997 * 108.99874 * 43.31003 * 6 5 2 37 37 H 1.09001 * 108.79346 * 300.44218 * 7 6 5 38 38 H 1.08995 * 108.70832 * 182.14916 * 7 6 5 39 39 H 1.07998 * 119.80729 * 179.97438 * 11 10 9 40 40 H 0.97011 * 119.99522 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.80186 * 179.97438 * 21 12 11 42 42 H 1.09002 * 108.98265 * 217.08453 * 24 8 7 43 43 H 1.09002 * 108.97879 * 335.78831 * 24 8 7 44 44 H 1.08992 * 108.92307 * 198.19274 * 25 24 8 45 45 H 1.09001 * 108.84498 * 79.58556 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0215 1.4488 0.0000 4 7 1.5569 2.1235 1.2195 5 6 2.0141 -0.6754 -1.2543 6 6 0.9597 -1.7125 -1.7017 7 6 1.0215 -2.9243 -0.8922 8 7 0.7486 -2.6749 0.5389 9 6 0.2460 -3.8089 1.1530 10 7 -0.9206 -3.7467 1.7834 11 6 -1.4403 -4.7959 2.3814 12 6 -0.7637 -6.0305 2.3694 13 6 -1.3186 -7.1598 3.0100 14 1 -1.9598 -7.0321 3.8697 15 6 -1.0381 -8.4436 2.5313 16 7 -0.4787 -8.5968 1.3577 17 14 -1.4616 -9.9397 3.5666 18 1 -2.0819 -9.4996 4.8420 19 1 -2.4162 -10.8014 2.8239 20 1 -0.2240 -10.7075 3.8564 21 6 0.4797 -6.1204 1.7045 22 6 0.9755 -5.0002 1.0988 23 17 2.4955 -5.0579 0.2621 24 6 1.9570 -2.2279 1.1880 25 6 2.0241 -0.6920 1.2875 26 1 -0.3634 -1.0228 0.0996 27 1 -0.3634 0.5977 0.8360 28 1 -0.3634 0.4252 -0.9355 29 1 3.1110 1.4629 -0.0304 30 1 1.6269 1.9664 -0.8743 31 1 1.8692 3.0827 1.2434 32 1 0.5529 2.0676 1.3036 33 1 2.9603 -1.1789 -1.0560 34 1 2.1514 0.0678 -2.0396 35 1 1.1367 -1.9724 -2.7453 36 1 -0.0330 -1.2722 -1.6082 37 1 2.0154 -3.3611 -0.9892 38 1 0.2874 -3.6355 -1.2708 39 1 -2.3915 -4.7100 2.8856 40 1 -0.2845 -9.4873 1.0256 41 1 1.0257 -7.0519 1.6762 42 1 1.9972 -2.6503 2.1920 43 1 2.8168 -2.5843 0.6206 44 1 3.0558 -0.3946 1.4748 45 1 1.4054 -0.3660 2.1236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164250533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:55 Heat of formation + Delta-G solvation = 27.368114 kcal Electronic energy + Delta-G solvation = -26363.251613 eV Core-core repulsion = 22826.919954 eV Total energy + Delta-G solvation = -3536.331658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63295 -40.02010 -37.66931 -37.11733 -35.81480 -34.25012 -32.68526 -32.53259 -31.25454 -29.03002 -27.80870 -26.47798 -25.92410 -23.80930 -23.57749 -22.93027 -21.34041 -19.44660 -19.00132 -18.20768 -17.43759 -17.26965 -16.80087 -16.47482 -16.04761 -15.86599 -15.23096 -15.04771 -14.96846 -14.64661 -14.56706 -14.05709 -13.90074 -13.81863 -13.67695 -13.44719 -13.30253 -12.95921 -12.71418 -12.58061 -12.49960 -12.24507 -12.11515 -11.94704 -11.81875 -11.70891 -11.44963 -11.28391 -11.25739 -11.00117 -10.85081 -10.39476 -10.09612 -9.42478 -9.40083 -8.98265 -8.71632 -6.53275 0.46015 0.85270 1.26385 1.39742 1.46572 1.55279 2.15895 2.59513 2.85099 3.46557 3.75871 3.82959 4.01952 4.06594 4.23195 4.26183 4.40441 4.44013 4.46785 4.57879 4.67220 4.69429 4.78981 4.85488 4.87134 4.90653 4.94668 5.00374 5.07544 5.13110 5.15124 5.19683 5.20236 5.35742 5.42563 5.52582 5.58299 5.65934 5.68794 5.77666 5.99500 6.26275 6.29075 6.39001 6.49139 6.65136 6.69247 6.72497 7.63690 8.18056 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.003558 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.208302 B = 7868.278960 C = 8357.220503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.041 4.041 3 C 0.075 3.925 4 N -0.858 5.858 5 C -0.099 4.099 6 C -0.123 4.123 7 C 0.057 3.943 8 N -0.454 5.454 9 C 0.164 3.836 10 N -0.441 5.441 11 C -0.021 4.021 12 C 0.050 3.950 13 C -0.468 4.468 14 H 0.096 0.904 15 C 0.034 3.966 16 N -0.818 5.818 17 Si 0.990 3.010 18 H -0.252 1.252 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.136 4.136 22 C -0.075 4.075 23 Cl -0.081 7.081 24 C 0.066 3.934 25 C -0.072 4.072 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.346 0.654 32 H 0.342 0.658 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.150 0.850 40 H 0.293 0.707 41 H 0.119 0.881 42 H 0.031 0.969 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 11.486 -4.364 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.042 4.042 3 C -0.056 4.056 4 N -0.390 5.390 5 C -0.137 4.137 6 C -0.160 4.160 7 C -0.070 4.070 8 N -0.174 5.174 9 C -0.067 4.067 10 N -0.149 5.149 11 C -0.184 4.184 12 C 0.045 3.955 13 C -0.496 4.496 14 H 0.114 0.886 15 C -0.183 4.183 16 N -0.443 5.443 17 Si 0.810 3.190 18 H -0.175 1.175 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.163 4.163 22 C -0.107 4.107 23 Cl -0.053 7.053 24 C -0.062 4.062 25 C -0.110 4.110 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.168 0.832 40 H 0.104 0.896 41 H 0.137 0.863 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.016 11.957 -4.180 13.623 hybrid contribution 0.372 -1.905 -0.363 1.975 sum 5.388 10.052 -4.542 12.276 Atomic orbital electron populations 1.22326 0.95187 1.04011 0.99316 1.20121 0.95925 0.94023 0.94128 1.21929 0.99770 0.93280 0.90575 1.58733 1.18399 1.21386 1.40492 1.21351 0.97831 0.97787 0.96750 1.20804 1.01553 0.95298 0.98374 1.21267 1.00352 0.98384 0.87011 1.57914 1.28965 1.28619 1.01949 1.18833 0.93788 0.88274 1.05770 1.66865 1.09842 1.31696 1.06489 1.22820 1.00741 0.89175 1.05624 1.18800 0.90648 0.94662 0.91363 1.19873 1.26373 0.90485 1.12918 0.88639 1.26879 0.92285 1.03791 0.95316 1.69850 1.30925 1.27013 1.16528 0.85014 0.78986 0.75955 0.79018 1.17501 1.19071 1.19089 1.21270 0.96364 0.96704 1.01965 1.22541 0.88957 0.97606 1.01608 1.98238 1.31762 1.98317 1.76955 1.21995 0.89957 0.97247 0.96975 1.21727 1.00318 0.91360 0.97623 0.89948 0.94242 0.93427 0.91173 0.94915 0.84139 0.84404 0.92432 0.90113 0.90565 0.90381 0.92936 0.94596 0.83225 0.89571 0.86292 0.95075 0.93449 0.91780 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 6.54 71.98 0.47 -3.53 16 2 C -0.04 -0.98 0.56 -52.57 -0.03 -1.01 16 3 C 0.08 1.43 5.36 86.30 0.46 1.89 16 4 N -0.86 -16.16 8.99 -186.71 -1.68 -17.84 16 5 C -0.10 -2.20 4.95 30.29 0.15 -2.05 16 6 C -0.12 -3.19 5.22 28.92 0.15 -3.04 16 7 C 0.06 1.90 3.75 83.94 0.32 2.21 16 8 N -0.45 -16.97 2.24 -716.24 -1.60 -18.58 16 9 C 0.16 7.43 5.21 133.32 0.69 8.13 16 10 N -0.44 -21.28 10.38 -191.08 -1.98 -23.27 16 11 C -0.02 -1.02 10.97 85.37 0.94 -0.08 16 12 C 0.05 2.57 5.54 -21.18 -0.12 2.45 16 13 C -0.47 -23.07 9.06 23.39 0.21 -22.85 16 14 H 0.10 4.42 7.88 -2.91 -0.02 4.40 16 15 C 0.03 1.57 5.23 85.22 0.45 2.02 16 16 N -0.82 -40.13 11.03 21.81 0.24 -39.89 16 17 Si 0.99 35.20 29.58 68.60 2.03 37.23 16 18 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 19 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 20 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 21 C -0.14 -6.92 8.48 22.65 0.19 -6.72 16 22 C -0.08 -3.48 5.88 22.28 0.13 -3.35 16 23 Cl -0.08 -3.14 23.34 -2.72 -0.06 -3.20 16 24 C 0.07 2.27 4.08 87.15 0.36 2.63 16 25 C -0.07 -2.05 4.51 31.39 0.14 -1.91 16 26 H 0.08 2.76 4.45 -2.39 -0.01 2.75 16 27 H 0.04 1.03 6.27 -2.39 -0.01 1.01 16 28 H 0.05 1.11 7.47 -2.39 -0.02 1.09 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.03 0.56 8.07 -2.39 -0.02 0.54 16 31 H 0.35 4.99 9.08 -89.69 -0.81 4.18 16 32 H 0.34 6.56 6.92 -89.69 -0.62 5.94 16 33 H 0.06 1.32 7.15 -2.39 -0.02 1.30 16 34 H 0.08 1.43 7.68 -2.39 -0.02 1.42 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.12 5.00 -2.39 -0.01 2.11 16 37 H 0.05 1.75 4.72 -2.39 -0.01 1.73 16 38 H 0.04 1.37 7.78 -2.39 -0.02 1.35 16 39 H 0.15 6.65 8.06 -2.91 -0.02 6.62 16 40 H 0.29 12.99 8.30 -92.70 -0.77 12.22 16 41 H 0.12 6.28 6.44 -2.91 -0.02 6.27 16 42 H 0.03 1.21 7.54 -2.39 -0.02 1.19 16 43 H 0.05 1.55 5.40 -2.39 -0.01 1.54 16 44 H 0.06 1.68 7.98 -2.39 -0.02 1.66 16 45 H 0.05 1.61 7.87 -2.39 -0.02 1.59 16 Total: -1.00 -54.86 342.59 1.06 -53.80 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.40 Total: 36.97 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 4.51 Total: -25.21 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -5.02 Total: -99.58 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 2.03 Total: 37.23 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.06 Total: -3.20 kcal Total: -54.86 1.06 -53.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164250533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.167 kcal (2) G-P(sol) polarization free energy of solvation -54.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds